Wall clock time and date at job start Tue Mar 31 2020 22:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86805 * 119.99640 * 2 1 4 4 H 1.48501 * 109.46844 * 272.58234 * 3 2 1 5 5 H 1.48501 * 109.47181 * 32.58321 * 3 2 1 6 6 H 1.48498 * 109.47296 * 152.58215 * 3 2 1 7 7 C 1.39941 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00018 * 341.23036 * 7 2 1 9 9 C 1.41395 * 119.99925 * 161.22365 * 7 2 1 10 10 C 1.40710 * 120.24591 * 333.01125 * 9 7 2 11 11 C 1.37616 * 119.74642 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.24972 * 359.97438 * 11 10 9 13 13 S 1.76194 * 119.75208 * 180.02562 * 12 11 10 14 14 O 1.42099 * 106.40537 * 23.56237 * 13 12 11 15 15 O 1.42101 * 106.40358 * 156.48087 * 13 12 11 16 16 N 1.65601 * 107.22078 * 270.02040 * 13 12 11 17 17 C 1.46500 * 119.99776 * 64.99890 * 16 13 12 18 18 H 1.09002 * 110.01844 * 336.34875 * 17 16 13 19 19 C 1.54269 * 110.03074 * 97.73698 * 17 16 13 20 20 C 1.54889 * 104.19477 * 142.89481 * 19 17 16 21 21 C 1.54896 * 102.74682 * 322.05724 * 20 19 17 22 22 C 1.53874 * 110.03201 * 214.90564 * 17 16 13 23 23 H 1.08998 * 110.03408 * 121.43022 * 22 17 16 24 24 C 1.50701 * 110.03049 * 359.97438 * 22 17 16 25 25 O 1.20831 * 120.00083 * 271.21692 * 24 22 17 26 26 O 1.34226 * 119.99948 * 91.22017 * 24 22 17 27 27 C 1.38639 * 120.49637 * 0.03699 * 12 11 10 28 28 C 1.37615 * 120.24918 * 359.96094 * 27 12 11 29 29 H 0.96994 * 120.00254 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.12836 * 359.70538 * 10 9 7 31 31 H 1.08003 * 119.88080 * 179.97438 * 11 10 9 32 32 H 0.96999 * 119.99899 * 245.00344 * 16 13 12 33 33 H 1.08998 * 110.48627 * 261.57437 * 19 17 16 34 34 H 1.09002 * 110.48890 * 24.08693 * 19 17 16 35 35 H 1.08995 * 110.75681 * 80.37082 * 20 19 17 36 36 H 1.08998 * 110.75543 * 203.74491 * 20 19 17 37 37 H 1.09002 * 110.48343 * 156.62499 * 21 20 19 38 38 H 1.08998 * 110.48908 * 279.12832 * 21 20 19 39 39 H 0.96702 * 117.00358 * 179.97438 * 26 24 22 40 40 H 1.08005 * 119.87118 * 179.97438 * 27 12 11 41 41 H 1.08007 * 120.12249 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4350 2.0780 -1.3987 5 1 1.4680 2.6363 0.7540 6 1 3.5660 1.4252 0.6447 7 6 2.0081 -1.2119 0.0005 8 1 1.5112 -2.1222 0.3019 9 6 3.3656 -1.2446 -0.3936 10 6 3.8673 -0.2813 -1.2882 11 6 5.1904 -0.3224 -1.6645 12 6 6.0281 -1.3077 -1.1652 13 16 7.7201 -1.3477 -1.6553 14 8 8.0508 -0.0276 -2.0641 15 8 8.4184 -2.0418 -0.6306 16 7 7.8158 -2.2946 -3.0104 17 6 7.1595 -1.8691 -4.2491 18 1 6.3450 -1.1811 -4.0226 19 6 8.1822 -1.1883 -5.1820 20 6 7.7640 -1.6448 -6.6018 21 6 7.3341 -3.1155 -6.3751 22 6 6.6202 -3.0945 -5.0077 23 1 5.5435 -3.0015 -5.1499 24 6 6.9340 -4.3544 -4.2427 25 8 7.9789 -4.9312 -4.4312 26 8 6.0528 -4.8358 -3.3520 27 6 5.5446 -2.2620 -0.2834 28 6 4.2250 -2.2401 0.1066 29 1 -0.4850 0.8400 -0.0004 30 1 3.2155 0.4849 -1.6814 31 1 5.5776 0.4156 -2.3513 32 1 8.3063 -3.1311 -2.9840 33 1 8.1153 -0.1038 -5.0948 34 1 9.1926 -1.5268 -4.9525 35 1 6.9274 -1.0499 -6.9681 36 1 8.6082 -1.5907 -7.2892 37 1 6.6482 -3.4375 -7.1587 38 1 8.2070 -3.7674 -6.3421 39 1 6.2981 -5.6468 -2.8860 40 1 6.2061 -3.0254 0.0990 41 1 3.8506 -2.9843 0.7940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:23 Heat of formation + Delta-G solvation = -162.263417 kcal Electronic energy + Delta-G solvation = -28243.173400 eV Core-core repulsion = 24213.854370 eV Total energy + Delta-G solvation = -4029.319030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.81570 -38.13104 -37.87173 -36.61115 -36.06068 -35.27882 -34.05651 -33.47762 -30.90719 -29.94166 -29.75388 -27.31489 -25.77956 -23.37224 -21.98080 -21.16646 -20.97235 -19.94323 -19.43684 -18.15490 -17.78183 -17.53857 -17.25617 -16.77621 -15.79957 -15.55339 -15.20449 -15.14655 -14.74061 -14.27402 -14.06091 -13.78729 -13.36130 -13.20596 -12.91171 -12.80269 -12.56862 -12.32248 -12.13710 -11.96268 -11.60109 -11.52963 -11.49973 -11.38567 -11.26868 -11.20831 -11.09387 -11.05780 -10.84208 -10.78537 -10.54912 -10.53389 -9.94596 -9.88439 -9.48564 -9.24008 -8.19063 -7.98054 -7.38719 -4.96211 1.05934 1.99399 2.09167 2.55224 2.88684 2.96664 3.02570 3.11063 3.50315 3.70590 4.06047 4.21613 4.26301 4.44110 4.75270 4.96019 5.10256 5.13071 5.17387 5.20853 5.24601 5.31755 5.45177 5.52623 5.71541 5.80435 5.82653 5.83496 6.04415 6.09056 6.24355 6.28977 6.44348 6.49001 6.54069 6.86544 7.00202 7.12558 7.20653 7.27355 7.54689 7.79975 7.84675 7.96895 8.31005 8.39579 9.59717 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.004101 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.964938 B = 6825.856817 C = 7009.236952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.081 3.919 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.411 4.411 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.257 4.257 11 C 0.013 3.987 12 C -0.793 4.793 13 S 2.690 3.310 14 O -0.978 6.978 15 O -0.981 6.981 16 N -1.125 6.125 17 C 0.169 3.831 18 H 0.107 0.893 19 C -0.140 4.140 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.096 4.096 23 H 0.116 0.884 24 C 0.495 3.505 25 O -0.522 6.522 26 O -0.503 6.503 27 C 0.011 3.989 28 C -0.221 4.221 29 H 0.294 0.706 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.409 0.591 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.409 0.591 40 H 0.107 0.893 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -3.571 -10.929 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.143 4.143 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.437 4.437 8 H 0.117 0.883 9 C 0.113 3.887 10 C -0.277 4.277 11 C -0.007 4.007 12 C -0.888 4.888 13 S 2.789 3.211 14 O -0.968 6.968 15 O -0.972 6.972 16 N -0.882 5.882 17 C 0.061 3.939 18 H 0.124 0.876 19 C -0.179 4.179 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.117 4.117 23 H 0.134 0.866 24 C 0.338 3.662 25 O -0.411 6.411 26 O -0.313 6.313 27 C -0.009 4.009 28 C -0.242 4.242 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.244 0.756 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.267 0.733 40 H 0.125 0.875 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.611 -2.707 -10.767 14.050 hybrid contribution -0.411 -0.476 0.361 0.725 sum 8.200 -3.183 -10.406 13.625 Atomic orbital electron populations 1.69673 1.08389 1.31465 1.30174 1.26414 0.94882 1.02628 0.90415 0.86221 0.81220 0.78597 0.79583 1.18890 1.21338 1.16322 1.19887 0.93344 0.96449 1.34035 0.88319 1.17887 0.92512 0.90406 0.87937 1.21093 0.95753 1.04718 1.06153 1.20198 0.93015 0.93182 0.94351 1.29164 1.22961 1.12989 1.23735 1.01382 0.75081 0.72832 0.71824 1.93501 1.83978 1.36870 1.82455 1.93505 1.73466 1.74771 1.55479 1.56160 1.67755 1.38560 1.25745 1.21289 0.95169 0.93477 0.83961 0.87556 1.22936 0.99586 1.01524 0.93864 1.22467 1.01508 0.95030 0.96920 1.22477 1.01050 0.98568 0.93366 1.22078 1.04209 0.89943 0.95492 0.86554 1.23113 0.80963 0.85200 0.76909 1.90699 1.25945 1.59578 1.64881 1.84647 1.49108 1.45431 1.52127 1.20170 0.95281 0.93652 0.91767 1.20975 0.93167 1.03808 1.06204 0.89502 0.87513 0.87369 0.75564 0.89733 0.90322 0.90698 0.90682 0.90607 0.89385 0.73259 0.87490 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.53 13.93 55.55 0.77 -17.76 16 2 C 0.08 1.91 5.41 -17.34 -0.09 1.82 16 3 Si 0.92 19.24 24.48 -169.99 -4.16 15.08 16 4 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 5 H -0.29 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.24 -5.30 6.93 56.52 0.39 -4.90 16 7 C -0.41 -10.07 9.58 -37.74 -0.36 -10.43 16 8 H 0.10 2.49 8.06 -52.48 -0.42 2.07 16 9 C 0.12 2.74 5.17 -106.83 -0.55 2.19 16 10 C -0.26 -5.78 7.23 -38.88 -0.28 -6.06 16 11 C 0.01 0.26 8.89 -39.66 -0.35 -0.09 16 12 C -0.79 -15.97 5.88 -39.29 -0.23 -16.20 16 13 S 2.69 48.79 5.65 -107.50 -0.61 48.18 16 14 O -0.98 -19.28 17.02 -57.17 -0.97 -20.26 16 15 O -0.98 -20.08 17.26 -57.17 -0.99 -21.07 16 16 N -1.13 -16.21 4.87 -3.94 -0.02 -16.23 16 17 C 0.17 2.09 3.42 -66.81 -0.23 1.87 16 18 H 0.11 1.32 7.30 -51.93 -0.38 0.94 16 19 C -0.14 -1.50 6.53 -25.07 -0.16 -1.67 16 20 C -0.12 -1.00 6.91 -24.73 -0.17 -1.17 16 21 C -0.12 -1.05 6.30 -25.07 -0.16 -1.21 16 22 C -0.10 -1.04 3.41 -90.65 -0.31 -1.35 16 23 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 24 C 0.50 6.11 5.45 36.01 0.20 6.31 16 25 O -0.52 -7.31 15.84 -18.75 -0.30 -7.61 16 26 O -0.50 -5.86 13.42 -39.25 -0.53 -6.39 16 27 C 0.01 0.23 9.49 -39.66 -0.38 -0.14 16 28 C -0.22 -4.85 9.80 -38.87 -0.38 -5.23 16 29 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 30 H 0.11 2.34 4.33 -52.48 -0.23 2.11 16 31 H 0.11 1.99 7.60 -52.48 -0.40 1.59 16 32 H 0.41 5.65 6.71 -34.47 -0.23 5.42 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.89 6.86 -51.93 -0.36 0.54 16 39 H 0.41 3.13 9.10 45.56 0.41 3.54 16 40 H 0.11 2.00 7.60 -52.48 -0.40 1.60 16 41 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -30.68 349.18 -9.13 -39.81 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -4.13 Total: 12.34 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -3.46 Total: -31.37 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.75 Total: -33.99 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -2.78 Total: -55.32 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.16 Total: 15.08 kcal Atomic # 16 Polarization: 48.79 SS G_CDS: -0.61 Total: 48.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.68 -9.13 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.450 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds