Wall clock time and date at job start Tue Mar 31 2020 22:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86805 * 119.99640 * 2 1 4 4 H 1.48501 * 109.46844 * 272.58234 * 3 2 1 5 5 H 1.48501 * 109.47181 * 32.58321 * 3 2 1 6 6 H 1.48498 * 109.47296 * 152.58215 * 3 2 1 7 7 C 1.39941 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00018 * 341.23036 * 7 2 1 9 9 C 1.41395 * 119.99925 * 161.22365 * 7 2 1 10 10 C 1.40710 * 120.24591 * 333.01125 * 9 7 2 11 11 C 1.37616 * 119.74642 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.24972 * 359.97438 * 11 10 9 13 13 S 1.76194 * 119.75208 * 180.02562 * 12 11 10 14 14 O 1.42099 * 106.40537 * 23.56237 * 13 12 11 15 15 O 1.42101 * 106.40358 * 156.48087 * 13 12 11 16 16 N 1.65601 * 107.22078 * 270.02040 * 13 12 11 17 17 C 1.46500 * 119.99776 * 64.99890 * 16 13 12 18 18 H 1.09002 * 110.01844 * 336.34875 * 17 16 13 19 19 C 1.54269 * 110.03074 * 97.73698 * 17 16 13 20 20 C 1.54889 * 104.19477 * 142.89481 * 19 17 16 21 21 C 1.54896 * 102.74682 * 322.05724 * 20 19 17 22 22 C 1.53874 * 110.03201 * 214.90564 * 17 16 13 23 23 H 1.08998 * 110.03408 * 121.43022 * 22 17 16 24 24 C 1.50701 * 110.03049 * 359.97438 * 22 17 16 25 25 O 1.20831 * 120.00083 * 271.21692 * 24 22 17 26 26 O 1.34226 * 119.99948 * 91.22017 * 24 22 17 27 27 C 1.38639 * 120.49637 * 0.03699 * 12 11 10 28 28 C 1.37615 * 120.24918 * 359.96094 * 27 12 11 29 29 H 0.96994 * 120.00254 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.12836 * 359.70538 * 10 9 7 31 31 H 1.08003 * 119.88080 * 179.97438 * 11 10 9 32 32 H 0.96999 * 119.99899 * 245.00344 * 16 13 12 33 33 H 1.08998 * 110.48627 * 261.57437 * 19 17 16 34 34 H 1.09002 * 110.48890 * 24.08693 * 19 17 16 35 35 H 1.08995 * 110.75681 * 80.37082 * 20 19 17 36 36 H 1.08998 * 110.75543 * 203.74491 * 20 19 17 37 37 H 1.09002 * 110.48343 * 156.62499 * 21 20 19 38 38 H 1.08998 * 110.48908 * 279.12832 * 21 20 19 39 39 H 0.96702 * 117.00358 * 179.97438 * 26 24 22 40 40 H 1.08005 * 119.87118 * 179.97438 * 27 12 11 41 41 H 1.08007 * 120.12249 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4350 2.0780 -1.3987 5 1 1.4680 2.6363 0.7540 6 1 3.5660 1.4252 0.6447 7 6 2.0081 -1.2119 0.0005 8 1 1.5112 -2.1222 0.3019 9 6 3.3656 -1.2446 -0.3936 10 6 3.8673 -0.2813 -1.2882 11 6 5.1904 -0.3224 -1.6645 12 6 6.0281 -1.3077 -1.1652 13 16 7.7201 -1.3477 -1.6553 14 8 8.0508 -0.0276 -2.0641 15 8 8.4184 -2.0418 -0.6306 16 7 7.8158 -2.2946 -3.0104 17 6 7.1595 -1.8691 -4.2491 18 1 6.3450 -1.1811 -4.0226 19 6 8.1822 -1.1883 -5.1820 20 6 7.7640 -1.6448 -6.6018 21 6 7.3341 -3.1155 -6.3751 22 6 6.6202 -3.0945 -5.0077 23 1 5.5435 -3.0015 -5.1499 24 6 6.9340 -4.3544 -4.2427 25 8 7.9789 -4.9312 -4.4312 26 8 6.0528 -4.8358 -3.3520 27 6 5.5446 -2.2620 -0.2834 28 6 4.2250 -2.2401 0.1066 29 1 -0.4850 0.8400 -0.0004 30 1 3.2155 0.4849 -1.6814 31 1 5.5776 0.4156 -2.3513 32 1 8.3063 -3.1311 -2.9840 33 1 8.1153 -0.1038 -5.0948 34 1 9.1926 -1.5268 -4.9525 35 1 6.9274 -1.0499 -6.9681 36 1 8.6082 -1.5907 -7.2892 37 1 6.6482 -3.4375 -7.1587 38 1 8.2070 -3.7674 -6.3421 39 1 6.2981 -5.6468 -2.8860 40 1 6.2061 -3.0254 0.0990 41 1 3.8506 -2.9843 0.7940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:22 Heat of formation + Delta-G solvation = -184.185971 kcal Electronic energy + Delta-G solvation = -28244.124033 eV Core-core repulsion = 24213.854370 eV Total energy + Delta-G solvation = -4030.269663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75220 -39.61077 -39.02991 -38.15354 -37.03095 -36.84976 -35.80155 -34.52708 -32.64589 -31.64505 -30.57002 -28.21887 -27.53053 -24.28123 -23.67315 -22.87029 -21.76150 -20.85868 -20.77267 -19.56167 -19.24908 -18.85487 -18.49936 -18.05199 -17.25631 -16.85674 -16.46668 -16.06429 -15.92123 -15.76475 -15.54578 -15.07132 -14.92177 -14.58733 -14.23626 -14.07742 -13.92291 -13.86994 -13.34827 -13.16435 -13.11232 -13.05541 -12.79006 -12.76244 -12.51633 -12.49147 -12.25978 -12.19213 -12.03734 -11.92768 -11.64843 -11.60225 -11.49912 -11.42614 -11.10298 -10.50832 -9.93603 -9.67934 -9.13953 -6.78457 -0.42837 0.29280 0.82677 1.13396 1.21329 1.35470 1.43752 2.00332 2.05845 2.18421 2.40584 2.82916 3.33019 3.42944 3.48424 3.49356 3.97878 4.12749 4.20277 4.22486 4.35189 4.38284 4.46408 4.48956 4.57762 4.58927 4.75678 4.80205 4.86449 5.05278 5.13541 5.21750 5.25280 5.26441 5.39513 5.46332 5.47804 5.54579 5.60872 5.75241 5.88473 6.03431 6.21079 6.52928 6.62141 6.98541 7.90898 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.004101 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.964938 B = 6825.856817 C = 7009.236952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.056 3.944 3 Si 0.959 3.041 4 H -0.246 1.246 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.449 4.449 8 H 0.073 0.927 9 C 0.106 3.894 10 C -0.272 4.272 11 C 0.012 3.988 12 C -0.791 4.791 13 S 2.719 3.281 14 O -0.988 6.988 15 O -1.003 7.003 16 N -1.113 6.113 17 C 0.155 3.845 18 H 0.107 0.893 19 C -0.143 4.143 20 C -0.112 4.112 21 C -0.112 4.112 22 C -0.098 4.098 23 H 0.130 0.870 24 C 0.494 3.506 25 O -0.542 6.542 26 O -0.511 6.511 27 C 0.010 3.990 28 C -0.236 4.236 29 H 0.304 0.696 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.415 0.585 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.423 0.577 40 H 0.127 0.873 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.644 -2.882 -12.819 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.165 4.165 3 Si 0.782 3.218 4 H -0.171 1.171 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.476 4.476 8 H 0.091 0.909 9 C 0.103 3.897 10 C -0.292 4.292 11 C -0.008 4.008 12 C -0.884 4.884 13 S 2.814 3.186 14 O -0.978 6.978 15 O -0.993 6.993 16 N -0.874 5.874 17 C 0.048 3.952 18 H 0.125 0.875 19 C -0.182 4.182 20 C -0.150 4.150 21 C -0.150 4.150 22 C -0.118 4.118 23 H 0.148 0.852 24 C 0.338 3.662 25 O -0.433 6.433 26 O -0.324 6.324 27 C -0.009 4.009 28 C -0.256 4.256 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.153 0.847 32 H 0.251 0.749 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.285 0.715 40 H 0.145 0.855 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.124 -2.027 -12.642 16.323 hybrid contribution -0.679 -0.831 0.901 1.401 sum 9.445 -2.858 -11.741 15.337 Atomic orbital electron populations 1.69672 1.09152 1.32653 1.31787 1.26903 0.95340 1.04345 0.89897 0.85612 0.79411 0.76391 0.80416 1.17092 1.19736 1.18267 1.19833 0.94327 0.96294 1.37114 0.90888 1.18063 0.92340 0.91202 0.88121 1.21246 0.96783 1.04859 1.06273 1.20525 0.92405 0.93578 0.94269 1.29680 1.24195 1.11972 1.22564 1.00565 0.73639 0.72546 0.71814 1.93488 1.83641 1.38012 1.82708 1.93477 1.73484 1.75157 1.57213 1.55799 1.67772 1.38440 1.25357 1.21641 0.95724 0.94469 0.83347 0.87459 1.22960 0.98787 1.01357 0.95093 1.22473 1.02621 0.94409 0.95512 1.22484 1.00828 0.98937 0.92752 1.22205 1.05226 0.88444 0.95975 0.85232 1.23424 0.80595 0.85470 0.76745 1.90694 1.26748 1.60324 1.65490 1.84629 1.49192 1.46438 1.52141 1.20446 0.94979 0.94110 0.91404 1.21185 0.93818 1.03978 1.06659 0.88476 0.87076 0.84716 0.74889 0.89719 0.90875 0.89120 0.89247 0.88549 0.90620 0.71548 0.85520 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.54 13.93 21.83 0.30 -39.23 16 2 C 0.06 2.69 5.41 85.25 0.46 3.16 16 3 Si 0.96 39.04 24.48 68.60 1.68 40.72 16 4 H -0.25 -9.26 6.54 99.48 0.65 -8.61 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 6 H -0.26 -11.21 6.93 99.48 0.69 -10.52 16 7 C -0.45 -22.82 9.58 23.46 0.22 -22.59 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C 0.11 5.05 5.17 -21.29 -0.11 4.94 16 10 C -0.27 -11.95 7.23 22.73 0.16 -11.79 16 11 C 0.01 0.47 8.89 22.22 0.20 0.66 16 12 C -0.79 -30.33 5.88 22.46 0.13 -30.20 16 13 S 2.72 92.53 5.65 -56.49 -0.32 92.21 16 14 O -0.99 -36.43 17.02 -128.00 -2.18 -38.61 16 15 O -1.00 -39.03 17.26 -128.00 -2.21 -41.24 16 16 N -1.11 -29.62 4.87 -166.37 -0.81 -30.43 16 17 C 0.16 3.44 3.42 45.72 0.16 3.60 16 18 H 0.11 2.37 7.30 -2.39 -0.02 2.35 16 19 C -0.14 -2.68 6.53 31.67 0.21 -2.47 16 20 C -0.11 -1.46 6.91 31.89 0.22 -1.24 16 21 C -0.11 -1.68 6.30 31.67 0.20 -1.48 16 22 C -0.10 -1.87 3.41 -10.82 -0.04 -1.90 16 23 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 24 C 0.49 11.26 5.45 71.24 0.39 11.65 16 25 O -0.54 -14.35 15.84 21.95 0.35 -14.00 16 26 O -0.51 -11.10 13.42 -51.38 -0.69 -11.79 16 27 C 0.01 0.41 9.49 22.22 0.21 0.62 16 28 C -0.24 -10.37 9.80 22.73 0.22 -10.14 16 29 H 0.30 13.14 8.30 -92.71 -0.77 12.37 16 30 H 0.11 4.73 4.33 -2.91 -0.01 4.72 16 31 H 0.14 4.53 7.60 -2.91 -0.02 4.51 16 32 H 0.41 10.62 6.71 -96.75 -0.65 9.97 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.36 6.86 -2.39 -0.02 1.34 16 39 H 0.42 5.92 9.10 -74.06 -0.67 5.24 16 40 H 0.13 4.50 7.60 -2.91 -0.02 4.48 16 41 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -65.15 349.18 -1.54 -66.69 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.30 Total: 32.86 kcal Atomic # 6 Polarization: -59.82 SS G_CDS: 2.64 Total: -57.18 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -0.51 Total: -69.67 kcal Atomic # 8 Polarization: -100.91 SS G_CDS: -4.73 Total: -105.64 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.68 Total: 40.72 kcal Atomic # 16 Polarization: 92.53 SS G_CDS: -0.32 Total: 92.21 kcal Total: -65.15 -1.54 -66.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.498 kcal (2) G-P(sol) polarization free energy of solvation -65.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds