Wall clock time and date at job start Tue Mar 31 2020 22:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 S 1.76200 * 119.75192 * 180.23254 * 12 11 10 14 14 O 1.42098 * 106.40777 * 203.54731 * 13 12 11 15 15 O 1.42111 * 106.39751 * 336.46312 * 13 12 11 16 16 N 1.65596 * 107.21871 * 89.99881 * 13 12 11 17 17 C 1.47425 * 125.64674 * 90.02881 * 16 13 12 18 18 C 1.54905 * 104.83309 * 204.09136 * 17 16 13 19 19 C 1.55161 * 101.58239 * 322.99249 * 18 17 16 20 20 H 1.09000 * 110.71468 * 276.95821 * 19 18 17 21 21 C 1.52999 * 110.71979 * 153.86698 * 19 18 17 22 22 C 1.50702 * 109.47462 * 66.44990 * 21 19 18 23 23 O 1.20823 * 119.99659 * 0.02562 * 22 21 19 24 24 O 1.34225 * 119.99763 * 179.97438 * 22 21 19 25 25 C 1.47016 * 125.65171 * 269.71956 * 16 13 12 26 26 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 27 27 C 1.37612 * 120.24660 * 359.97438 * 26 12 11 28 28 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 30 30 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 31 31 H 1.09004 * 110.36722 * 322.93434 * 17 16 13 32 32 H 1.09007 * 110.36915 * 85.14052 * 17 16 13 33 33 H 1.09007 * 111.00171 * 81.06417 * 18 17 16 34 34 H 1.08999 * 111.00751 * 204.91472 * 18 17 16 35 35 H 1.08997 * 109.46776 * 186.45560 * 21 19 18 36 36 H 1.09004 * 109.46671 * 306.44992 * 21 19 18 37 37 H 0.96702 * 116.99039 * 180.02562 * 24 22 21 38 38 H 1.08995 * 109.88680 * 298.39581 * 25 16 13 39 39 H 1.09007 * 109.88473 * 59.56199 * 25 16 13 40 40 H 1.08003 * 119.87153 * 179.97438 * 26 12 11 41 41 H 1.08001 * 120.12580 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 16 -0.7507 -6.2385 1.5849 14 8 0.2069 -7.2801 1.4543 15 8 -1.4316 -5.9566 2.8000 16 7 -1.9208 -6.5340 0.4510 17 6 -1.7428 -7.3221 -0.7821 18 6 -2.8389 -6.8034 -1.7460 19 6 -4.0184 -6.5516 -0.7698 20 1 -4.5634 -7.4756 -0.5771 21 6 -4.9571 -5.4766 -1.3211 22 6 -5.6328 -5.9902 -2.5664 23 8 -5.3889 -7.1022 -2.9711 24 8 -6.5063 -5.2126 -3.2252 25 6 -3.3110 -6.0593 0.5104 26 6 1.1746 -4.8057 0.2845 27 6 1.8205 -3.6493 -0.0886 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1469 -1.4129 1.5758 30 1 -1.2682 -3.4991 2.2269 31 1 -0.7530 -7.1478 -1.2041 32 1 -1.8858 -8.3833 -0.5781 33 1 -2.5275 -5.8775 -2.2297 34 1 -3.0988 -7.5606 -2.4857 35 1 -5.7111 -5.2340 -0.5723 36 1 -4.3831 -4.5817 -1.5619 37 1 -6.9146 -5.5858 -4.0184 38 1 -3.8056 -6.4697 1.3907 39 1 -3.3296 -4.9700 0.5464 40 1 1.5323 -5.7606 -0.0713 41 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:34 Heat of formation + Delta-G solvation = -157.922707 kcal Electronic energy + Delta-G solvation = -27244.424986 eV Core-core repulsion = 23215.294183 eV Total energy + Delta-G solvation = -4029.130803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55571 -38.42107 -37.58927 -36.51443 -36.28754 -35.13897 -34.06014 -32.76464 -30.27468 -29.54329 -29.46332 -27.37899 -25.83126 -22.52024 -22.08778 -21.45056 -21.14877 -20.14243 -18.54273 -18.23220 -17.64636 -17.26830 -17.05734 -16.52486 -16.11694 -15.62257 -15.32129 -14.87461 -14.16485 -13.85591 -13.62103 -13.43469 -13.36389 -13.25353 -13.18411 -12.74206 -12.42940 -12.21485 -12.12587 -11.81609 -11.72805 -11.52679 -11.43605 -11.31555 -11.24631 -11.21778 -11.13443 -11.00370 -10.91727 -10.68820 -10.61695 -10.44585 -9.77997 -9.63599 -9.51807 -8.63819 -7.97176 -7.72382 -7.17163 -4.82102 1.15865 2.02300 2.23786 2.82702 2.85627 2.87658 2.90611 2.94630 3.64187 3.65844 4.22368 4.39082 4.42493 4.60712 4.66834 4.95524 5.09770 5.28428 5.33246 5.35572 5.37300 5.46167 5.58885 5.69362 5.89402 5.99015 6.01955 6.04466 6.09061 6.23249 6.31084 6.39233 6.58455 6.65993 6.74207 6.95716 7.03186 7.31993 7.40547 7.61257 7.69146 7.74877 7.94735 8.29660 8.49144 8.62902 9.74388 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010564 B = 0.003637 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.774206 B = 7696.204722 C = 9493.389565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.435 4.435 8 H 0.088 0.912 9 C 0.140 3.860 10 C -0.182 4.182 11 C -0.015 4.015 12 C -0.786 4.786 13 S 2.706 3.294 14 O -0.980 6.980 15 O -0.979 6.979 16 N -1.016 6.016 17 C 0.125 3.875 18 C -0.126 4.126 19 C -0.087 4.087 20 H 0.093 0.907 21 C -0.109 4.109 22 C 0.481 3.519 23 O -0.514 6.514 24 O -0.519 6.519 25 C 0.128 3.872 26 C 0.001 3.999 27 C -0.238 4.238 28 H 0.289 0.711 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.408 0.592 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.411 -5.271 -5.038 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.463 4.463 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.203 4.203 11 C -0.036 4.036 12 C -0.882 4.882 13 S 2.807 3.193 14 O -0.971 6.971 15 O -0.970 6.970 16 N -0.852 5.852 17 C -0.001 4.001 18 C -0.165 4.165 19 C -0.106 4.106 20 H 0.111 0.889 21 C -0.146 4.146 22 C 0.323 3.677 23 O -0.402 6.402 24 O -0.331 6.331 25 C 0.002 3.998 26 C -0.019 4.019 27 C -0.259 4.259 28 H 0.100 0.900 29 H 0.140 0.860 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.267 0.733 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.173 -5.828 -3.990 12.385 hybrid contribution 0.141 1.246 -1.103 1.670 sum -10.032 -4.582 -5.093 12.148 Atomic orbital electron populations 1.69813 1.07930 1.30338 1.30782 1.26123 0.94886 1.02110 0.91777 0.86155 0.80857 0.79619 0.79482 1.19112 1.19557 1.17979 1.19946 0.98506 0.91208 1.36608 0.89441 1.17847 0.90007 0.92120 0.86431 1.21325 1.00115 0.96814 1.02028 1.20244 0.96726 0.91663 0.94948 1.29241 1.16401 1.16023 1.26552 1.00935 0.71826 0.74382 0.72168 1.93479 1.60523 1.56556 1.86525 1.93476 1.74892 1.86527 1.42142 1.58898 1.22242 1.66183 1.37892 1.21886 0.99594 0.94862 0.83716 1.22924 0.93831 1.02519 0.97243 1.22060 0.95530 0.97995 0.95061 0.88899 1.21431 0.99598 1.00933 0.92683 1.23526 0.76121 0.82994 0.85020 1.90713 1.61121 1.21070 1.67248 1.84562 1.55772 1.49801 1.42961 1.21606 0.81470 0.99525 0.97152 1.20164 0.92224 0.97232 0.92256 1.21049 1.04519 0.92726 1.07582 0.90007 0.86003 0.87949 0.90609 0.91644 0.90547 0.89289 0.87119 0.86754 0.73296 0.91044 0.91121 0.87874 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.80 10.97 55.55 0.61 -17.19 16 2 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 3 Si 0.92 16.76 29.60 -169.99 -5.03 11.73 16 4 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 6 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 7 C -0.44 -10.56 9.05 -37.74 -0.34 -10.90 16 8 H 0.09 2.01 7.91 -52.48 -0.42 1.60 16 9 C 0.14 3.50 5.57 -106.83 -0.60 2.90 16 10 C -0.18 -4.50 8.70 -38.87 -0.34 -4.83 16 11 C -0.02 -0.35 9.49 -39.66 -0.38 -0.73 16 12 C -0.79 -17.24 6.00 -39.29 -0.24 -17.47 16 13 S 2.71 52.98 5.93 -107.50 -0.64 52.35 16 14 O -0.98 -20.96 16.84 -57.17 -0.96 -21.93 16 15 O -0.98 -20.95 16.84 -57.17 -0.96 -21.91 16 16 N -1.02 -15.91 3.70 -111.42 -0.41 -16.33 16 17 C 0.12 1.69 6.98 -2.53 -0.02 1.67 16 18 C -0.13 -1.47 5.77 -24.58 -0.14 -1.61 16 19 C -0.09 -0.91 2.54 -88.78 -0.23 -1.14 16 20 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 21 C -0.11 -0.95 5.18 -27.88 -0.14 -1.09 16 22 C 0.48 4.61 8.12 36.01 0.29 4.90 16 23 O -0.51 -6.26 15.37 -18.75 -0.29 -6.55 16 24 O -0.52 -3.99 13.42 -39.24 -0.53 -4.52 16 25 C 0.13 1.65 6.59 -3.06 -0.02 1.63 16 26 C 0.00 0.03 9.49 -39.66 -0.38 -0.35 16 27 C -0.24 -5.59 9.80 -38.88 -0.38 -5.97 16 28 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 29 H 0.12 3.03 6.17 -52.49 -0.32 2.71 16 30 H 0.10 2.16 7.60 -52.49 -0.40 1.76 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.91 8.02 -51.93 -0.42 0.49 16 34 H 0.09 1.00 7.23 -51.93 -0.38 0.63 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.41 1.48 9.10 45.56 0.41 1.90 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.89 7.82 -51.93 -0.41 0.48 16 40 H 0.10 2.07 7.60 -52.48 -0.40 1.68 16 41 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -31.84 358.91 -10.20 -42.04 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.41 Total: 8.32 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: -2.99 Total: -31.42 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.20 Total: -33.52 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -2.74 Total: -54.90 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Atomic # 16 Polarization: 52.98 SS G_CDS: -0.64 Total: 52.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.84 -10.20 -42.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.885 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds