Wall clock time and date at job start Tue Mar 31 2020 22:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 S 1.76200 * 119.75192 * 180.23254 * 12 11 10 14 14 O 1.42098 * 106.40777 * 203.54731 * 13 12 11 15 15 O 1.42111 * 106.39751 * 336.46312 * 13 12 11 16 16 N 1.65596 * 107.21871 * 89.99881 * 13 12 11 17 17 C 1.47425 * 125.64674 * 90.02881 * 16 13 12 18 18 C 1.54905 * 104.83309 * 204.09136 * 17 16 13 19 19 C 1.55161 * 101.58239 * 322.99249 * 18 17 16 20 20 H 1.09000 * 110.71468 * 276.95821 * 19 18 17 21 21 C 1.52999 * 110.71979 * 153.86698 * 19 18 17 22 22 C 1.50702 * 109.47462 * 66.44990 * 21 19 18 23 23 O 1.20823 * 119.99659 * 0.02562 * 22 21 19 24 24 O 1.34225 * 119.99763 * 179.97438 * 22 21 19 25 25 C 1.47016 * 125.65171 * 269.71956 * 16 13 12 26 26 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 27 27 C 1.37612 * 120.24660 * 359.97438 * 26 12 11 28 28 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 30 30 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 31 31 H 1.09004 * 110.36722 * 322.93434 * 17 16 13 32 32 H 1.09007 * 110.36915 * 85.14052 * 17 16 13 33 33 H 1.09007 * 111.00171 * 81.06417 * 18 17 16 34 34 H 1.08999 * 111.00751 * 204.91472 * 18 17 16 35 35 H 1.08997 * 109.46776 * 186.45560 * 21 19 18 36 36 H 1.09004 * 109.46671 * 306.44992 * 21 19 18 37 37 H 0.96702 * 116.99039 * 180.02562 * 24 22 21 38 38 H 1.08995 * 109.88680 * 298.39581 * 25 16 13 39 39 H 1.09007 * 109.88473 * 59.56199 * 25 16 13 40 40 H 1.08003 * 119.87153 * 179.97438 * 26 12 11 41 41 H 1.08001 * 120.12580 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 16 -0.7507 -6.2385 1.5849 14 8 0.2069 -7.2801 1.4543 15 8 -1.4316 -5.9566 2.8000 16 7 -1.9208 -6.5340 0.4510 17 6 -1.7428 -7.3221 -0.7821 18 6 -2.8389 -6.8034 -1.7460 19 6 -4.0184 -6.5516 -0.7698 20 1 -4.5634 -7.4756 -0.5771 21 6 -4.9571 -5.4766 -1.3211 22 6 -5.6328 -5.9902 -2.5664 23 8 -5.3889 -7.1022 -2.9711 24 8 -6.5063 -5.2126 -3.2252 25 6 -3.3110 -6.0593 0.5104 26 6 1.1746 -4.8057 0.2845 27 6 1.8205 -3.6493 -0.0886 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1469 -1.4129 1.5758 30 1 -1.2682 -3.4991 2.2269 31 1 -0.7530 -7.1478 -1.2041 32 1 -1.8858 -8.3833 -0.5781 33 1 -2.5275 -5.8775 -2.2297 34 1 -3.0988 -7.5606 -2.4857 35 1 -5.7111 -5.2340 -0.5723 36 1 -4.3831 -4.5817 -1.5619 37 1 -6.9146 -5.5858 -4.0184 38 1 -3.8056 -6.4697 1.3907 39 1 -3.3296 -4.9700 0.5464 40 1 1.5323 -5.7606 -0.0713 41 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:33 Heat of formation + Delta-G solvation = -179.132916 kcal Electronic energy + Delta-G solvation = -27245.344730 eV Core-core repulsion = 23215.294183 eV Total energy + Delta-G solvation = -4030.050546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30625 -39.41378 -39.37155 -38.17325 -37.00355 -36.80503 -35.80179 -33.71350 -32.06392 -31.29839 -30.54684 -28.29873 -27.61019 -23.60060 -23.23420 -22.95290 -22.89093 -20.98524 -19.96580 -19.42687 -18.95762 -18.74017 -18.22258 -17.82501 -17.19433 -16.85674 -16.63075 -16.14064 -15.82177 -15.28040 -14.99707 -14.84856 -14.54230 -14.45578 -14.12119 -13.97224 -13.95671 -13.75150 -13.58949 -13.16000 -13.05644 -13.04294 -12.91332 -12.87909 -12.59741 -12.54501 -12.38176 -12.18369 -12.01116 -11.88019 -11.59767 -11.54714 -11.41744 -11.34137 -11.21524 -9.92221 -9.75284 -9.55314 -8.87421 -6.64594 -0.39207 0.48575 1.05521 1.30814 1.36336 1.42256 1.52754 2.11498 2.14489 2.25742 2.53588 2.94125 3.32553 3.49116 3.58954 3.76580 3.83234 4.24483 4.29923 4.30784 4.36776 4.46210 4.54573 4.63095 4.68344 4.77490 4.86251 4.93150 4.94752 5.04942 5.06578 5.12146 5.19322 5.23854 5.35944 5.50127 5.55530 5.60186 5.71833 5.77886 5.93376 6.15374 6.48858 6.68306 6.80815 7.08424 8.07889 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010564 B = 0.003637 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.774206 B = 7696.204722 C = 9493.389565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.090 0.910 9 C 0.112 3.888 10 C -0.205 4.205 11 C -0.019 4.019 12 C -0.796 4.796 13 S 2.736 3.264 14 O -0.997 6.997 15 O -0.997 6.997 16 N -1.015 6.015 17 C 0.115 3.885 18 C -0.120 4.120 19 C -0.076 4.076 20 H 0.102 0.898 21 C -0.108 4.108 22 C 0.487 3.513 23 O -0.544 6.544 24 O -0.517 6.517 25 C 0.117 3.883 26 C -0.003 4.003 27 C -0.257 4.257 28 H 0.299 0.701 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.426 0.574 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 -5.116 -5.586 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.108 0.892 9 C 0.108 3.892 10 C -0.226 4.226 11 C -0.039 4.039 12 C -0.889 4.889 13 S 2.834 3.166 14 O -0.988 6.988 15 O -0.988 6.988 16 N -0.854 5.854 17 C -0.010 4.010 18 C -0.159 4.159 19 C -0.096 4.096 20 H 0.120 0.880 21 C -0.146 4.146 22 C 0.331 3.669 23 O -0.434 6.434 24 O -0.331 6.331 25 C -0.008 4.008 26 C -0.022 4.022 27 C -0.277 4.277 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.154 0.846 36 H 0.134 0.866 37 H 0.288 0.712 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.140 0.860 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.320 -5.647 -4.554 13.445 hybrid contribution 0.374 1.089 -0.974 1.508 sum -10.945 -4.558 -5.529 13.082 Atomic orbital electron populations 1.69832 1.09248 1.31862 1.30660 1.26951 0.95589 1.04989 0.90721 0.85078 0.79207 0.75102 0.79813 1.18202 1.18616 1.18107 1.20226 0.98924 0.92185 1.38025 0.89191 1.18187 0.90663 0.93187 0.87128 1.21342 1.00982 0.97078 1.03153 1.20440 0.96927 0.91656 0.94856 1.29712 1.16665 1.17035 1.25536 0.99981 0.71596 0.73065 0.71985 1.93450 1.61866 1.56568 1.86941 1.93447 1.75110 1.86560 1.43652 1.58546 1.22593 1.66175 1.38071 1.22155 1.00233 0.95459 0.83149 1.22873 0.93606 1.02364 0.97072 1.21987 0.95268 0.98946 0.93421 0.87975 1.21441 0.99917 1.00104 0.93146 1.23568 0.75891 0.82495 0.84985 1.90708 1.62262 1.22327 1.68103 1.84520 1.55266 1.49524 1.43809 1.21905 0.79995 0.99869 0.98997 1.20430 0.92093 0.97701 0.92018 1.21268 1.05281 0.92874 1.08281 0.88971 0.87007 0.86597 0.91065 0.90190 0.91056 0.88635 0.84617 0.86611 0.71237 0.89916 0.90964 0.85978 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.22 10.97 21.82 0.24 -36.98 16 2 C 0.04 1.69 5.14 85.26 0.44 2.13 16 3 Si 0.99 33.97 29.60 68.60 2.03 36.00 16 4 H -0.26 -8.45 7.11 99.48 0.71 -7.75 16 5 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 6 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 7 C -0.47 -23.15 9.05 23.46 0.21 -22.94 16 8 H 0.09 4.24 7.91 -2.91 -0.02 4.21 16 9 C 0.11 5.76 5.57 -21.29 -0.12 5.64 16 10 C -0.21 -10.40 8.70 22.73 0.20 -10.20 16 11 C -0.02 -0.87 9.49 22.22 0.21 -0.66 16 12 C -0.80 -34.93 6.00 22.46 0.13 -34.79 16 13 S 2.74 104.86 5.93 -56.49 -0.34 104.52 16 14 O -1.00 -41.76 16.84 -128.00 -2.16 -43.92 16 15 O -1.00 -41.71 16.84 -128.00 -2.16 -43.86 16 16 N -1.02 -30.38 3.70 -506.42 -1.87 -32.25 16 17 C 0.11 2.93 6.98 86.85 0.61 3.53 16 18 C -0.12 -2.59 5.77 31.99 0.18 -2.41 16 19 C -0.08 -1.44 2.54 -9.60 -0.02 -1.46 16 20 H 0.10 1.78 8.04 -2.39 -0.02 1.76 16 21 C -0.11 -1.63 5.18 29.85 0.15 -1.47 16 22 C 0.49 8.27 8.12 71.24 0.58 8.85 16 23 O -0.54 -12.25 15.37 21.97 0.34 -11.91 16 24 O -0.52 -6.74 13.42 -51.37 -0.69 -7.43 16 25 C 0.12 2.78 6.59 86.73 0.57 3.35 16 26 C 0.00 -0.12 9.49 22.22 0.21 0.09 16 27 C -0.26 -12.28 9.80 22.73 0.22 -12.06 16 28 H 0.30 12.39 8.30 -92.71 -0.77 11.62 16 29 H 0.11 5.77 6.17 -2.91 -0.02 5.75 16 30 H 0.12 4.91 7.60 -2.91 -0.02 4.89 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.07 1.61 8.02 -2.38 -0.02 1.59 16 34 H 0.10 1.98 7.23 -2.39 -0.02 1.96 16 35 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 1.76 8.10 -2.38 -0.02 1.74 16 37 H 0.43 2.14 9.10 -74.06 -0.67 1.46 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 1.70 7.82 -2.38 -0.02 1.68 16 40 H 0.12 4.86 7.60 -2.91 -0.02 4.84 16 41 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -68.17 358.91 -0.62 -68.79 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.40 Total: 29.42 kcal Atomic # 6 Polarization: -65.97 SS G_CDS: 3.58 Total: -62.39 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -1.63 Total: -69.23 kcal Atomic # 8 Polarization: -102.46 SS G_CDS: -4.66 Total: -107.12 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Atomic # 16 Polarization: 104.86 SS G_CDS: -0.34 Total: 104.52 kcal Total: -68.17 -0.62 -68.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.340 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds