Wall clock time and date at job start Tue Mar 31 2020 22:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47205 * 239.99742 * 3 2 1 5 5 H 1.48502 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47218 * 119.99744 * 3 2 1 7 7 C 1.39947 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00053 * 196.85901 * 7 2 1 9 9 C 1.41394 * 119.99431 * 16.86311 * 7 2 1 10 10 C 1.40719 * 120.24841 * 25.53427 * 9 7 2 11 11 C 1.37622 * 119.74531 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24454 * 0.02562 * 11 10 9 13 13 S 1.76206 * 119.74404 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40075 * 331.08739 * 13 12 11 15 15 O 1.42100 * 106.39943 * 198.17245 * 13 12 11 16 16 N 1.65597 * 107.21928 * 84.63083 * 13 12 11 17 17 C 1.46498 * 119.99811 * 62.20423 * 16 13 12 18 18 C 1.52999 * 112.85039 * 54.79348 * 17 16 13 19 19 C 1.50701 * 109.47475 * 56.17254 * 18 17 16 20 20 O 1.20830 * 119.99497 * 357.98539 * 19 18 17 21 21 O 1.34227 * 120.00581 * 177.99171 * 19 18 17 22 22 C 1.53784 * 113.61277 * 185.98483 * 17 16 13 23 23 C 1.53955 * 87.01705 * 89.23545 * 22 17 16 24 24 C 1.53770 * 87.11345 * 25.36101 * 23 22 17 25 25 C 1.38631 * 120.50702 * 0.25398 * 12 11 10 26 26 C 1.37622 * 120.24648 * 359.44159 * 25 12 11 27 27 H 0.97004 * 120.00067 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.12239 * 0.02562 * 10 9 7 29 29 H 1.07992 * 119.87609 * 179.97438 * 11 10 9 30 30 H 0.96995 * 120.00115 * 242.20440 * 16 13 12 31 31 H 1.09001 * 109.47283 * 296.17074 * 18 17 16 32 32 H 1.09001 * 109.47714 * 176.17139 * 18 17 16 33 33 H 0.96696 * 117.00380 * 185.01650 * 21 19 18 34 34 H 1.09002 * 113.61420 * 203.75278 * 22 17 16 35 35 H 1.08998 * 113.61450 * 334.65409 * 22 17 16 36 36 H 1.09006 * 113.53348 * 270.80701 * 23 22 17 37 37 H 1.08997 * 113.67087 * 139.93950 * 23 22 17 38 38 H 1.09003 * 113.61684 * 220.09009 * 24 23 22 39 39 H 1.09000 * 113.61778 * 89.18958 * 24 23 22 40 40 H 1.08001 * 119.87978 * 179.70292 * 25 12 11 41 41 H 1.08000 * 120.12588 * 180.27501 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0958 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0531 -1.2318 0.2718 9 6 1.3466 -2.4102 -0.3542 10 6 0.2172 -2.3751 -1.1928 11 6 -0.4189 -3.5476 -1.5310 12 6 0.0488 -4.7601 -1.0483 13 16 -0.7762 -6.2534 -1.4892 14 8 -2.1370 -5.9096 -1.7109 15 8 -0.3659 -7.2324 -0.5445 16 7 -0.1707 -6.7340 -2.9537 17 6 1.2494 -7.0689 -3.0849 18 6 1.7028 -8.1364 -2.0870 19 6 0.8474 -9.3671 -2.2447 20 8 -0.0577 -9.3751 -3.0451 21 8 1.0909 -10.4541 -1.4959 22 6 1.6838 -7.3544 -4.5322 23 6 1.9751 -5.8478 -4.6570 24 6 2.1708 -5.8385 -3.1318 25 6 1.1571 -4.8063 -0.2168 26 6 1.8127 -3.6468 0.1295 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1490 -1.4315 -1.5695 29 1 -1.2861 -3.5231 -2.1741 30 1 -0.7563 -6.7938 -3.7246 31 1 1.6020 -7.7514 -1.0723 32 1 2.7453 -8.3919 -2.2768 33 1 0.5651 -11.2436 -1.6840 34 1 2.5743 -7.9788 -4.6057 35 1 0.8711 -7.6975 -5.1724 36 1 1.1166 -5.2648 -4.9907 37 1 2.8837 -5.6225 -5.2152 38 1 1.7506 -4.9595 -2.6430 39 1 3.1946 -6.0476 -2.8216 40 1 1.5099 -5.7560 0.1573 41 1 2.6785 -3.6854 0.7738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094291132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:43 Heat of formation + Delta-G solvation = -131.465102 kcal Electronic energy + Delta-G solvation = -28479.142380 eV Core-core repulsion = 24451.158865 eV Total energy + Delta-G solvation = -4027.983515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.47950 -38.93986 -37.61149 -36.48428 -35.87804 -35.13000 -34.06496 -32.39535 -30.30179 -30.25014 -29.50831 -25.96800 -25.49818 -23.96278 -21.52294 -21.17366 -21.15242 -19.68499 -18.51794 -17.91396 -17.64291 -17.14249 -16.61102 -16.41130 -15.64461 -15.56698 -15.28922 -15.05912 -14.51923 -14.16815 -13.74557 -13.44293 -13.22641 -13.02938 -12.81041 -12.44669 -12.28524 -12.20288 -11.96439 -11.79649 -11.56526 -11.45672 -11.37315 -11.31231 -11.27056 -11.16999 -10.93494 -10.72113 -10.58388 -10.46733 -10.39605 -9.98001 -9.77027 -9.63714 -9.47685 -9.01105 -7.95831 -7.72357 -7.14895 -4.82377 1.24720 2.23256 2.44220 2.86710 2.87739 2.89703 2.92538 3.17306 3.63695 3.67241 4.22072 4.40288 4.57738 4.69604 4.71718 4.95841 5.05294 5.28705 5.31456 5.36829 5.59944 5.71501 5.72600 5.86097 5.99279 6.05789 6.07055 6.16318 6.24795 6.42837 6.59824 6.64600 6.65975 6.69252 6.89727 7.01259 7.30817 7.36220 7.41592 7.60933 7.74134 7.94617 8.06882 8.29679 8.49058 8.61973 9.76663 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.003618 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.307331 B = 7738.162031 C = 8098.016032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.437 4.437 8 H 0.087 0.913 9 C 0.141 3.859 10 C -0.181 4.181 11 C -0.013 4.013 12 C -0.785 4.785 13 S 2.692 3.308 14 O -0.984 6.984 15 O -0.989 6.989 16 N -1.093 6.093 17 C 0.175 3.825 18 C -0.132 4.132 19 C 0.493 3.507 20 O -0.513 6.513 21 O -0.519 6.519 22 C -0.130 4.130 23 C -0.135 4.135 24 C -0.160 4.160 25 C 0.003 3.997 26 C -0.236 4.236 27 H 0.290 0.710 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.415 0.585 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.404 0.596 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 -9.634 -6.940 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.138 3.862 10 C -0.202 4.202 11 C -0.034 4.034 12 C -0.881 4.881 13 S 2.791 3.209 14 O -0.975 6.975 15 O -0.979 6.979 16 N -0.848 5.848 17 C 0.084 3.916 18 C -0.171 4.171 19 C 0.336 3.664 20 O -0.401 6.401 21 O -0.331 6.331 22 C -0.169 4.169 23 C -0.172 4.172 24 C -0.198 4.198 25 C -0.018 4.018 26 C -0.257 4.257 27 H 0.101 0.899 28 H 0.139 0.861 29 H 0.118 0.882 30 H 0.249 0.751 31 H 0.150 0.850 32 H 0.131 0.869 33 H 0.262 0.738 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.075 -9.599 -6.434 12.621 hybrid contribution 0.065 0.786 -0.372 0.872 sum 5.140 -8.813 -6.806 12.264 Atomic orbital electron populations 1.69809 1.07895 1.30517 1.30550 1.26127 0.94883 1.02088 0.91907 0.86203 0.80160 0.79236 0.80391 1.18378 1.19928 1.18572 1.19907 0.98179 0.91131 1.37165 0.89488 1.17830 0.90035 0.92119 0.86240 1.21314 0.99818 0.96768 1.02267 1.20206 0.95782 0.91810 0.95553 1.29075 1.18596 1.15422 1.25017 1.01245 0.73084 0.74497 0.72085 1.93500 1.33368 1.85292 1.85310 1.93440 1.83402 1.60158 1.60888 1.55292 1.15367 1.84191 1.29950 1.20680 0.81521 0.93777 0.95607 1.22093 0.99582 0.90587 1.04872 1.23226 0.82956 0.83943 0.76313 1.90663 1.30704 1.82935 1.35796 1.84545 1.64377 1.23524 1.60629 1.23232 1.01468 0.97409 0.94785 1.22780 1.01988 0.95785 0.96656 1.23667 0.99717 0.99136 0.97324 1.20134 0.91817 0.97350 0.92455 1.21015 1.04207 0.92849 1.07608 0.89877 0.86132 0.88175 0.75088 0.84967 0.86872 0.73814 0.89428 0.90560 0.89852 0.91310 0.87772 0.89010 0.87801 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.06 10.97 55.55 0.61 -17.45 16 2 C 0.07 1.63 5.15 -17.34 -0.09 1.54 16 3 Si 0.92 16.64 29.59 -169.99 -5.03 11.61 16 4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 7 C -0.44 -10.32 9.05 -37.74 -0.34 -10.66 16 8 H 0.09 1.93 7.90 -52.49 -0.41 1.51 16 9 C 0.14 3.41 5.56 -106.82 -0.59 2.82 16 10 C -0.18 -4.36 8.69 -38.87 -0.34 -4.69 16 11 C -0.01 -0.29 9.48 -39.66 -0.38 -0.67 16 12 C -0.78 -16.40 3.95 -39.29 -0.16 -16.56 16 13 S 2.69 52.32 5.69 -107.50 -0.61 51.71 16 14 O -0.98 -22.16 17.41 -57.17 -1.00 -23.16 16 15 O -0.99 -20.15 13.57 -57.17 -0.78 -20.93 16 16 N -1.09 -16.94 4.33 1.19 0.01 -16.94 16 17 C 0.17 2.31 0.54 -131.01 -0.07 2.24 16 18 C -0.13 -1.71 4.58 -27.88 -0.13 -1.84 16 19 C 0.49 6.97 7.44 36.01 0.27 7.23 16 20 O -0.51 -8.22 15.61 -18.75 -0.29 -8.51 16 21 O -0.52 -6.13 13.42 -39.25 -0.53 -6.66 16 22 C -0.13 -1.40 6.94 -25.83 -0.18 -1.58 16 23 C -0.13 -1.51 8.00 -25.83 -0.21 -1.72 16 24 C -0.16 -2.07 6.96 -25.93 -0.18 -2.25 16 25 C 0.00 0.05 8.40 -39.66 -0.33 -0.28 16 26 C -0.24 -5.21 9.80 -38.87 -0.38 -5.59 16 27 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 28 H 0.12 2.97 6.21 -52.49 -0.33 2.64 16 29 H 0.10 2.12 7.73 -52.49 -0.41 1.71 16 30 H 0.41 5.88 8.75 -34.47 -0.30 5.58 16 31 H 0.13 1.91 5.96 -51.93 -0.31 1.60 16 32 H 0.11 1.05 8.10 -51.93 -0.42 0.63 16 33 H 0.40 2.98 9.10 45.56 0.41 3.39 16 34 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.66 5.13 -51.93 -0.27 1.39 16 39 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.10 1.91 7.27 -52.49 -0.38 1.53 16 41 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -30.98 349.52 -9.53 -40.51 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -4.07 Total: 16.57 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -3.10 Total: -32.02 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.61 Total: -34.39 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -2.59 Total: -59.26 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.61 kcal Atomic # 16 Polarization: 52.32 SS G_CDS: -0.61 Total: 51.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.98 -9.53 -40.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094291132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.957 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds