Wall clock time and date at job start Tue Mar 31 2020 22:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47205 * 239.99742 * 3 2 1 5 5 H 1.48502 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47218 * 119.99744 * 3 2 1 7 7 C 1.39947 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00053 * 196.85901 * 7 2 1 9 9 C 1.41394 * 119.99431 * 16.86311 * 7 2 1 10 10 C 1.40719 * 120.24841 * 25.53427 * 9 7 2 11 11 C 1.37622 * 119.74531 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24454 * 0.02562 * 11 10 9 13 13 S 1.76206 * 119.74404 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40075 * 331.08739 * 13 12 11 15 15 O 1.42100 * 106.39943 * 198.17245 * 13 12 11 16 16 N 1.65597 * 107.21928 * 84.63083 * 13 12 11 17 17 C 1.46498 * 119.99811 * 62.20423 * 16 13 12 18 18 C 1.52999 * 112.85039 * 54.79348 * 17 16 13 19 19 C 1.50701 * 109.47475 * 56.17254 * 18 17 16 20 20 O 1.20830 * 119.99497 * 357.98539 * 19 18 17 21 21 O 1.34227 * 120.00581 * 177.99171 * 19 18 17 22 22 C 1.53784 * 113.61277 * 185.98483 * 17 16 13 23 23 C 1.53955 * 87.01705 * 89.23545 * 22 17 16 24 24 C 1.53770 * 87.11345 * 25.36101 * 23 22 17 25 25 C 1.38631 * 120.50702 * 0.25398 * 12 11 10 26 26 C 1.37622 * 120.24648 * 359.44159 * 25 12 11 27 27 H 0.97004 * 120.00067 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.12239 * 0.02562 * 10 9 7 29 29 H 1.07992 * 119.87609 * 179.97438 * 11 10 9 30 30 H 0.96995 * 120.00115 * 242.20440 * 16 13 12 31 31 H 1.09001 * 109.47283 * 296.17074 * 18 17 16 32 32 H 1.09001 * 109.47714 * 176.17139 * 18 17 16 33 33 H 0.96696 * 117.00380 * 185.01650 * 21 19 18 34 34 H 1.09002 * 113.61420 * 203.75278 * 22 17 16 35 35 H 1.08998 * 113.61450 * 334.65409 * 22 17 16 36 36 H 1.09006 * 113.53348 * 270.80701 * 23 22 17 37 37 H 1.08997 * 113.67087 * 139.93950 * 23 22 17 38 38 H 1.09003 * 113.61684 * 220.09009 * 24 23 22 39 39 H 1.09000 * 113.61778 * 89.18958 * 24 23 22 40 40 H 1.08001 * 119.87978 * 179.70292 * 25 12 11 41 41 H 1.08000 * 120.12588 * 180.27501 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0958 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0531 -1.2318 0.2718 9 6 1.3466 -2.4102 -0.3542 10 6 0.2172 -2.3751 -1.1928 11 6 -0.4189 -3.5476 -1.5310 12 6 0.0488 -4.7601 -1.0483 13 16 -0.7762 -6.2534 -1.4892 14 8 -2.1370 -5.9096 -1.7109 15 8 -0.3659 -7.2324 -0.5445 16 7 -0.1707 -6.7340 -2.9537 17 6 1.2494 -7.0689 -3.0849 18 6 1.7028 -8.1364 -2.0870 19 6 0.8474 -9.3671 -2.2447 20 8 -0.0577 -9.3751 -3.0451 21 8 1.0909 -10.4541 -1.4959 22 6 1.6838 -7.3544 -4.5322 23 6 1.9751 -5.8478 -4.6570 24 6 2.1708 -5.8385 -3.1318 25 6 1.1571 -4.8063 -0.2168 26 6 1.8127 -3.6468 0.1295 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1490 -1.4315 -1.5695 29 1 -1.2861 -3.5231 -2.1741 30 1 -0.7563 -6.7938 -3.7246 31 1 1.6020 -7.7514 -1.0723 32 1 2.7453 -8.3919 -2.2768 33 1 0.5651 -11.2436 -1.6840 34 1 2.5743 -7.9788 -4.6057 35 1 0.8711 -7.6975 -5.1724 36 1 1.1166 -5.2648 -4.9907 37 1 2.8837 -5.6225 -5.2152 38 1 1.7506 -4.9595 -2.6430 39 1 3.1946 -6.0476 -2.8216 40 1 1.5099 -5.7560 0.1573 41 1 2.6785 -3.6854 0.7738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094291132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:42 Heat of formation + Delta-G solvation = -152.820658 kcal Electronic energy + Delta-G solvation = -28480.068426 eV Core-core repulsion = 24451.158865 eV Total energy + Delta-G solvation = -4028.909561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50906 -39.96876 -39.32049 -38.13839 -36.89835 -36.78919 -35.77449 -33.57642 -32.04584 -31.35194 -31.20713 -27.62447 -26.51943 -24.95622 -23.25010 -22.92064 -22.13646 -20.87064 -19.90560 -19.38290 -18.94418 -18.59553 -18.20071 -17.47432 -17.15754 -16.75075 -16.58921 -16.12547 -15.83271 -15.77567 -15.17234 -15.01047 -14.71259 -14.11604 -14.08885 -13.95303 -13.81381 -13.52473 -13.25016 -13.16939 -13.06441 -12.96044 -12.88325 -12.84388 -12.54976 -12.51100 -12.32992 -12.01933 -11.69780 -11.64030 -11.52228 -11.47756 -11.26678 -11.15085 -10.97142 -10.25676 -9.70662 -9.48190 -8.83349 -6.61090 -0.31176 0.52056 1.11179 1.37677 1.39777 1.45934 1.51485 2.12747 2.21882 2.27831 2.56408 2.92166 3.51582 3.53275 3.62937 3.71430 3.75613 4.03077 4.17810 4.33254 4.36518 4.47091 4.66740 4.75824 4.90814 4.92279 4.96108 4.98626 5.08798 5.14594 5.20192 5.27274 5.29227 5.37412 5.56705 5.63054 5.64370 5.74841 5.80863 5.97285 6.19777 6.20380 6.53443 6.72692 6.85216 7.13627 8.11403 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.003618 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.307331 B = 7738.162031 C = 8098.016032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.034 3.966 3 Si 0.989 3.011 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.467 4.467 8 H 0.095 0.905 9 C 0.117 3.883 10 C -0.203 4.203 11 C -0.020 4.020 12 C -0.784 4.784 13 S 2.714 3.286 14 O -1.018 7.018 15 O -0.996 6.996 16 N -1.083 6.083 17 C 0.160 3.840 18 C -0.139 4.139 19 C 0.489 3.511 20 O -0.539 6.539 21 O -0.518 6.518 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.164 4.164 25 C 0.009 3.991 26 C -0.247 4.247 27 H 0.296 0.704 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.421 0.579 31 H 0.117 0.883 32 H 0.154 0.846 33 H 0.422 0.578 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.902 -10.724 -7.544 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.494 4.494 8 H 0.113 0.887 9 C 0.113 3.887 10 C -0.223 4.223 11 C -0.040 4.040 12 C -0.878 4.878 13 S 2.811 3.189 14 O -1.009 7.009 15 O -0.986 6.986 16 N -0.841 5.841 17 C 0.071 3.929 18 C -0.177 4.177 19 C 0.333 3.667 20 O -0.429 6.429 21 O -0.331 6.331 22 C -0.153 4.153 23 C -0.170 4.170 24 C -0.203 4.203 25 C -0.011 4.011 26 C -0.268 4.268 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.257 0.743 31 H 0.135 0.865 32 H 0.172 0.828 33 H 0.283 0.717 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.077 -10.703 -7.021 14.627 hybrid contribution -0.582 0.932 -0.207 1.118 sum 6.496 -9.772 -7.228 13.781 Atomic orbital electron populations 1.69865 1.09476 1.31757 1.31509 1.26999 0.95468 1.05242 0.90745 0.85121 0.78737 0.74696 0.80543 1.17889 1.19364 1.17882 1.20215 0.98746 0.91933 1.38500 0.88738 1.18152 0.90401 0.93391 0.86714 1.21281 1.00879 0.96690 1.03493 1.20329 0.95849 0.92142 0.95657 1.29370 1.18233 1.15764 1.24407 1.00514 0.72024 0.73680 0.72650 1.93452 1.35647 1.85694 1.86066 1.93431 1.83335 1.59790 1.62018 1.54931 1.16996 1.83524 1.28689 1.21031 0.79793 0.94326 0.97775 1.22223 1.01822 0.89928 1.03731 1.23478 0.82624 0.84620 0.75967 1.90655 1.31727 1.83535 1.36999 1.84503 1.64668 1.23980 1.59963 1.23226 1.02365 0.97342 0.92385 1.22770 1.02451 0.96158 0.95598 1.23716 1.00668 0.97517 0.98371 1.20379 0.91201 0.97965 0.91581 1.21230 1.04953 0.92670 1.07924 0.89257 0.87658 0.87827 0.74257 0.86475 0.82812 0.71694 0.86529 0.90784 0.91100 0.89362 0.91074 0.86635 0.85328 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.04 10.97 21.83 0.24 -38.80 16 2 C 0.03 1.57 5.15 85.26 0.44 2.01 16 3 Si 0.99 34.02 29.59 68.60 2.03 36.05 16 4 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 5 H -0.27 -8.91 7.11 99.48 0.71 -8.21 16 6 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 7 C -0.47 -22.51 9.05 23.46 0.21 -22.29 16 8 H 0.09 4.23 7.90 -2.91 -0.02 4.21 16 9 C 0.12 5.79 5.56 -21.29 -0.12 5.67 16 10 C -0.20 -10.17 8.69 22.73 0.20 -9.97 16 11 C -0.02 -0.91 9.48 22.22 0.21 -0.70 16 12 C -0.78 -32.92 3.95 22.46 0.09 -32.83 16 13 S 2.71 104.61 5.69 -56.49 -0.32 104.29 16 14 O -1.02 -46.23 17.41 -128.00 -2.23 -48.46 16 15 O -1.00 -39.57 13.57 -128.00 -1.74 -41.30 16 16 N -1.08 -32.54 4.33 -150.14 -0.65 -33.19 16 17 C 0.16 3.88 0.54 4.13 0.00 3.89 16 18 C -0.14 -3.18 4.58 29.85 0.14 -3.04 16 19 C 0.49 12.63 7.44 71.24 0.53 13.16 16 20 O -0.54 -16.27 15.61 21.95 0.34 -15.92 16 21 O -0.52 -10.88 13.42 -51.39 -0.69 -11.57 16 22 C -0.11 -2.11 6.94 31.18 0.22 -1.89 16 23 C -0.13 -2.66 8.00 31.18 0.25 -2.41 16 24 C -0.16 -3.92 6.96 31.12 0.22 -3.70 16 25 C 0.01 0.35 8.40 22.22 0.19 0.53 16 26 C -0.25 -10.96 9.80 22.73 0.22 -10.74 16 27 H 0.30 12.98 8.30 -92.71 -0.77 12.21 16 28 H 0.11 5.49 6.21 -2.91 -0.02 5.47 16 29 H 0.10 4.57 7.73 -2.91 -0.02 4.55 16 30 H 0.42 11.66 8.75 -96.75 -0.85 10.81 16 31 H 0.12 3.11 5.96 -2.39 -0.01 3.09 16 32 H 0.15 2.18 8.10 -2.39 -0.02 2.16 16 33 H 0.42 5.21 9.10 -74.06 -0.67 4.54 16 34 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 35 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 36 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 2.22 5.13 -2.39 -0.01 2.21 16 39 H 0.12 2.17 8.10 -2.39 -0.02 2.15 16 40 H 0.13 4.53 7.27 -2.91 -0.02 4.51 16 41 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -67.89 349.52 -0.64 -68.54 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -0.42 Total: 42.69 kcal Atomic # 6 Polarization: -65.11 SS G_CDS: 2.79 Total: -62.32 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -0.41 Total: -71.99 kcal Atomic # 8 Polarization: -112.95 SS G_CDS: -4.31 Total: -117.26 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 2.03 Total: 36.05 kcal Atomic # 16 Polarization: 104.61 SS G_CDS: -0.32 Total: 104.29 kcal Total: -67.89 -0.64 -68.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094291132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.282 kcal (2) G-P(sol) polarization free energy of solvation -67.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds