Wall clock time and date at job start Tue Mar 31 2020 22:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47232 * 240.00489 * 3 2 1 5 5 H 1.48509 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47352 * 120.00181 * 3 2 1 7 7 C 1.37872 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47532 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54365 * 68.37838 * 11 10 9 13 13 O 1.42095 * 110.54164 * 291.62353 * 11 10 9 14 14 O 1.52205 * 104.44778 * 180.02562 * 11 10 9 15 15 C 1.35965 * 114.00152 * 74.99639 * 14 11 10 16 16 C 1.38726 * 119.98334 * 90.00329 * 15 14 11 17 17 C 1.38086 * 120.01365 * 180.02562 * 16 15 14 18 18 C 1.38844 * 119.98585 * 359.97438 * 17 16 15 19 19 N 1.40115 * 120.01379 * 180.02562 * 18 17 16 20 20 C 1.46763 * 124.34925 * 354.19505 * 19 18 17 21 21 C 1.54474 * 105.47359 * 197.01610 * 20 19 18 22 22 C 1.54627 * 101.76694 * 334.58429 * 21 20 19 23 23 C 1.34413 * 124.34862 * 173.89307 * 19 18 17 24 24 O 1.21297 * 124.94653 * 359.58049 * 23 19 18 25 25 C 1.38844 * 119.97411 * 0.27374 * 18 17 16 26 26 C 1.38093 * 119.97932 * 359.47314 * 25 18 17 27 27 H 0.97003 * 120.00289 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46852 * 59.99801 * 9 7 2 29 29 H 1.08999 * 109.47061 * 300.00331 * 9 7 2 30 30 H 1.09008 * 109.46563 * 59.99704 * 10 9 7 31 31 H 1.08994 * 109.46924 * 300.00465 * 10 9 7 32 32 H 1.07999 * 119.99305 * 0.02562 * 16 15 14 33 33 H 1.08002 * 120.00766 * 179.97438 * 17 16 15 34 34 H 1.08996 * 110.24896 * 316.01822 * 20 19 18 35 35 H 1.09008 * 110.24564 * 77.92562 * 20 19 18 36 36 H 1.09005 * 110.97191 * 92.70371 * 21 20 19 37 37 H 1.09007 * 110.96913 * 216.46671 * 21 20 19 38 38 H 1.09000 * 110.48590 * 143.47269 * 22 21 20 39 39 H 1.08998 * 110.48595 * 265.98574 * 22 21 20 40 40 H 1.07992 * 120.00938 * 179.72193 * 25 18 17 41 41 H 1.08001 * 119.99137 * 180.22707 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 16 1.3383 -5.2330 -0.0026 12 8 0.6639 -5.4188 -1.2394 13 8 0.6649 -5.4205 1.2345 14 8 2.4249 -6.2988 -0.0032 15 6 3.0449 -6.4572 1.1964 16 6 2.5484 -7.3667 2.1188 17 6 3.1773 -7.5276 3.3375 18 6 4.3072 -6.7793 3.6395 19 7 4.9461 -6.9426 4.8758 20 6 4.4375 -7.7829 5.9663 21 6 5.1972 -7.3225 7.2300 22 6 6.4951 -6.7409 6.6234 23 6 6.1065 -6.3542 5.2133 24 8 6.7475 -5.6181 4.4932 25 6 4.8006 -5.8655 2.7181 26 6 4.1738 -5.7093 1.4975 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5566 -0.8902 29 1 0.6247 -2.5571 0.8896 30 1 2.8727 -3.6046 0.8878 31 1 2.8713 -3.6039 -0.8922 32 1 1.6698 -7.9490 1.8836 33 1 2.7904 -8.2355 4.0557 34 1 3.3660 -7.6286 6.0931 35 1 4.6450 -8.8332 5.7613 36 1 4.6375 -6.5541 7.7635 37 1 5.4163 -8.1675 7.8830 38 1 6.8204 -5.8658 7.1860 39 1 7.2805 -7.4965 6.6071 40 1 5.6768 -5.2799 2.9541 41 1 4.5597 -5.0011 0.7792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111326043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:48 Heat of formation + Delta-G solvation = -135.324411 kcal Electronic energy + Delta-G solvation = -27087.159708 eV Core-core repulsion = 23059.008841 eV Total energy + Delta-G solvation = -4028.150867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.41259 -41.67563 -39.00467 -38.34013 -37.64679 -37.25252 -35.96332 -33.87223 -33.25880 -32.30092 -29.78676 -28.65397 -27.71592 -24.94455 -24.62277 -23.67989 -22.28767 -21.85468 -20.90790 -19.62031 -19.05221 -18.72306 -18.52963 -18.09290 -17.67968 -16.87367 -16.64888 -16.53570 -16.20253 -15.59732 -15.29341 -15.06673 -14.80417 -14.77887 -14.64510 -14.48581 -14.31060 -14.07826 -13.97368 -13.79974 -13.43125 -13.38065 -13.25759 -13.22836 -12.94647 -12.86165 -12.38216 -12.30403 -12.28543 -12.20516 -11.95418 -11.78334 -11.27044 -11.06785 -10.82020 -10.65927 -10.26244 -9.11318 -8.28004 -6.42067 -1.05255 -0.07777 0.10816 1.11579 1.39058 1.40128 1.42585 1.50750 1.68131 2.35683 2.46382 2.54805 2.93088 3.05286 3.22518 3.53189 3.60525 3.71994 3.75104 3.92341 3.96162 4.00395 4.10548 4.16444 4.18488 4.43421 4.63436 4.65673 4.68988 4.78017 4.87799 4.97223 5.05462 5.08000 5.11289 5.20734 5.21633 5.22983 5.28666 5.65474 5.78013 5.94247 6.03328 6.70221 6.87640 7.27818 8.84133 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003361 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.985733 B = 8329.147746 C =10079.430710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.026 3.974 10 C -0.613 4.613 11 S 2.602 3.398 12 O -0.973 6.973 13 O -0.976 6.976 14 O -0.660 6.660 15 C 0.009 3.991 16 C -0.070 4.070 17 C -0.130 4.130 18 C 0.179 3.821 19 N -0.561 5.561 20 C 0.079 3.921 21 C -0.119 4.119 22 C -0.145 4.145 23 C 0.498 3.502 24 O -0.555 6.555 25 C -0.157 4.157 26 C -0.101 4.101 27 H 0.268 0.732 28 H 0.010 0.990 29 H 0.012 0.988 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.182 0.818 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.130 0.870 40 H 0.157 0.843 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.988 -20.764 18.041 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.092 0.908 9 C -0.012 4.012 10 C -0.742 4.742 11 S 2.702 3.298 12 O -0.971 6.971 13 O -0.975 6.975 14 O -0.619 6.619 15 C -0.033 4.033 16 C -0.090 4.090 17 C -0.151 4.151 18 C 0.083 3.917 19 N -0.284 5.284 20 C -0.041 4.041 21 C -0.156 4.156 22 C -0.184 4.184 23 C 0.290 3.710 24 O -0.433 6.433 25 C -0.178 4.178 26 C -0.122 4.122 27 H 0.077 0.923 28 H 0.028 0.972 29 H 0.031 0.969 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.199 0.801 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.148 0.852 40 H 0.174 0.826 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.662 -20.895 17.498 30.051 hybrid contribution 0.225 1.718 -0.873 1.940 sum 12.887 -19.176 16.625 28.464 Atomic orbital electron populations 1.70082 1.07958 1.28467 1.50602 1.26081 0.95883 1.03741 0.94257 0.85379 0.78187 0.77388 0.79392 1.18875 1.20638 1.18917 1.21471 0.93945 0.90821 1.51953 0.90821 1.18780 0.93269 0.92433 0.96756 1.30616 1.13549 1.17573 1.12491 1.05218 0.74919 0.76374 0.73320 1.93529 1.71893 1.85050 1.46642 1.93529 1.73571 1.84028 1.46343 1.85736 1.64350 1.70164 1.41632 1.18399 0.97411 1.04909 0.82621 1.21399 0.99559 0.95795 0.92293 1.20973 0.94926 1.01939 0.97225 1.18114 0.93152 0.94822 0.85653 1.46252 1.22720 1.46118 1.13302 1.22798 1.01328 0.95515 0.84415 1.22695 0.93433 1.03624 0.95860 1.22428 1.01268 1.05128 0.89609 1.22236 0.79359 0.78022 0.91363 1.90639 1.56651 1.37342 1.58680 1.21500 1.03118 1.00351 0.92804 1.21478 0.93635 0.98992 0.98080 0.92270 0.97157 0.96923 0.84083 0.83579 0.82596 0.80074 0.87903 0.87356 0.89163 0.85164 0.86727 0.85183 0.82558 0.82709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.29 21.44 0.28 -56.98 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 8 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.03 1.41 4.98 29.85 0.15 1.56 16 10 C -0.61 -25.11 5.40 71.98 0.39 -24.72 16 11 S 2.60 103.37 5.17 -56.49 -0.29 103.08 16 12 O -0.97 -44.84 18.09 -118.57 -2.15 -46.99 16 13 O -0.98 -41.10 16.26 -118.57 -1.93 -43.03 16 14 O -0.66 -22.27 10.05 -62.25 -0.63 -22.90 16 15 C 0.01 0.27 4.80 22.50 0.11 0.38 16 16 C -0.07 -1.74 9.04 22.35 0.20 -1.54 16 17 C -0.13 -2.46 9.40 22.38 0.21 -2.25 16 18 C 0.18 3.93 6.60 38.11 0.25 4.19 16 19 N -0.56 -8.99 3.14 -627.55 -1.97 -10.97 16 20 C 0.08 0.40 6.26 86.83 0.54 0.94 16 21 C -0.12 -0.15 7.18 31.65 0.23 0.08 16 22 C -0.14 -0.98 6.86 30.59 0.21 -0.77 16 23 C 0.50 9.22 7.92 87.90 0.70 9.92 16 24 O -0.55 -15.57 14.83 -3.08 -0.05 -15.61 16 25 C -0.16 -4.26 9.28 22.38 0.21 -4.06 16 26 C -0.10 -2.87 8.45 22.35 0.19 -2.68 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.14 5.19 6.60 -2.39 -0.02 5.17 16 31 H 0.15 5.30 8.14 -2.39 -0.02 5.29 16 32 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 33 H 0.18 1.75 7.01 -2.91 -0.02 1.73 16 34 H 0.10 0.34 7.70 -2.39 -0.02 0.32 16 35 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 36 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 37 H 0.13 -0.61 8.14 -2.38 -0.02 -0.62 16 38 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.16 4.59 5.27 -2.91 -0.02 4.58 16 41 H 0.16 3.94 7.49 -2.91 -0.02 3.92 16 Total: -1.00 -85.37 355.73 0.44 -84.94 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.06 Total: 11.47 kcal Atomic # 6 Polarization: -53.32 SS G_CDS: 4.08 Total: -49.24 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -1.69 Total: -67.95 kcal Atomic # 8 Polarization: -123.78 SS G_CDS: -4.74 Total: -128.53 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 103.37 SS G_CDS: -0.29 Total: 103.08 kcal Total: -85.37 0.44 -84.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111326043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.389 kcal (2) G-P(sol) polarization free energy of solvation -85.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds