Wall clock time and date at job start Tue Mar 31 2020 22:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00430 * 2 1 4 4 H 1.48497 * 109.47139 * 240.00028 * 3 2 1 5 5 H 1.48501 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47361 * 119.99784 * 3 2 1 7 7 C 1.37883 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99639 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00286 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47327 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47161 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54434 * 68.37143 * 11 10 9 13 13 O 1.42104 * 110.53989 * 291.61782 * 11 10 9 14 14 O 1.52201 * 104.44926 * 179.97438 * 11 10 9 15 15 C 1.35969 * 113.99984 * 74.99520 * 14 11 10 16 16 C 1.38726 * 119.98381 * 89.99953 * 15 14 11 17 17 C 1.38089 * 120.01757 * 180.02562 * 16 15 14 18 18 C 1.38847 * 119.98184 * 0.26009 * 17 16 15 19 19 N 1.40113 * 120.01443 * 179.71781 * 18 17 16 20 20 C 1.34781 * 119.99639 * 33.29898 * 19 18 17 21 21 O 1.21294 * 120.00084 * 5.27353 * 20 19 18 22 22 C 1.50699 * 119.99579 * 185.27593 * 20 19 18 23 23 C 1.53001 * 117.49764 * 248.62147 * 22 20 19 24 24 C 1.52999 * 117.49639 * 180.02562 * 22 20 19 25 25 C 1.38848 * 119.97127 * 359.44114 * 18 17 16 26 26 C 1.38089 * 119.98296 * 0.58160 * 25 18 17 27 27 H 0.97005 * 119.99794 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47325 * 59.99700 * 9 7 2 29 29 H 1.09005 * 109.47131 * 299.99935 * 9 7 2 30 30 H 1.08998 * 109.47337 * 59.99495 * 10 9 7 31 31 H 1.09006 * 109.46648 * 299.99400 * 10 9 7 32 32 H 1.08003 * 119.99036 * 0.02746 * 16 15 14 33 33 H 1.07998 * 120.00979 * 179.97438 * 17 16 15 34 34 H 0.96997 * 120.00217 * 213.29743 * 19 18 17 35 35 H 1.08998 * 115.55302 * 34.32512 * 22 20 19 36 36 H 1.09007 * 117.49616 * 359.97438 * 23 22 20 37 37 H 1.08996 * 117.50010 * 145.02176 * 23 22 20 38 38 H 1.09003 * 117.49607 * 214.97891 * 24 22 20 39 39 H 1.09000 * 117.49763 * 359.97120 * 24 22 20 40 40 H 1.07995 * 120.00847 * 180.27836 * 25 18 17 41 41 H 1.08006 * 119.99115 * 179.71922 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3381 -5.2331 0.0011 12 8 0.6654 -5.4199 -1.2366 13 8 0.6628 -5.4195 1.2374 14 8 2.4245 -6.2990 0.0018 15 6 3.0436 -6.4568 1.2020 16 6 2.5463 -7.3658 2.1244 17 6 3.1742 -7.5262 3.3438 18 6 4.3004 -6.7736 3.6486 19 7 4.9346 -6.9316 4.8880 20 6 4.9539 -8.1394 5.4859 21 8 4.5074 -9.1087 4.9095 22 6 5.5303 -8.2853 6.8707 23 6 6.8382 -9.0664 7.0128 24 6 5.5238 -9.6822 7.4949 25 6 4.8014 -5.8685 2.7225 26 6 4.1722 -5.7087 1.5037 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8712 -3.6040 0.8922 31 1 2.8724 -3.6048 -0.8878 32 1 1.6677 -7.9481 1.8888 33 1 2.7866 -8.2336 4.0620 34 1 5.3597 -6.1718 5.3156 35 1 5.3762 -7.4358 7.5360 36 1 7.2816 -9.4749 6.1046 37 1 7.5450 -8.7307 7.7716 38 1 5.3654 -9.7518 8.5711 39 1 5.1023 -10.4955 6.9041 40 1 5.6800 -5.2860 2.9572 41 1 4.5591 -5.0014 0.7850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111329966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:14 Heat of formation + Delta-G solvation = -115.866812 kcal Electronic energy + Delta-G solvation = -26534.164329 eV Core-core repulsion = 22506.857207 eV Total energy + Delta-G solvation = -4027.307122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27320 -41.41098 -39.19163 -38.33056 -37.24375 -37.07616 -35.93563 -35.66701 -33.22831 -32.25667 -30.45068 -27.67903 -26.15722 -24.50208 -24.05467 -23.39594 -23.25218 -21.54195 -21.20229 -19.59956 -19.18528 -18.77088 -18.59597 -18.40857 -17.88366 -16.67968 -16.56928 -16.52089 -16.33193 -15.90375 -15.60209 -15.23099 -15.08184 -14.66090 -14.48194 -14.36274 -14.16524 -13.97184 -13.73054 -13.61685 -13.50118 -13.36420 -13.25307 -12.89398 -12.81266 -12.43367 -12.29841 -12.22643 -12.17631 -11.74793 -11.60623 -11.53094 -11.43541 -11.11920 -11.00634 -10.61629 -10.20009 -9.31446 -8.23538 -6.37593 -1.03736 -0.05570 0.14353 1.14063 1.32423 1.43568 1.47144 1.55151 1.84640 2.39684 2.44121 2.59108 2.90042 2.95626 3.10301 3.51102 3.62329 3.70373 3.78927 3.83408 3.96962 3.97668 4.04561 4.18108 4.20934 4.23728 4.45146 4.71244 4.77163 4.81931 4.91546 5.01241 5.04105 5.08568 5.10590 5.19740 5.24504 5.25997 5.28142 5.69912 5.74269 6.06813 6.30714 6.75640 7.00758 7.32457 8.88654 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.002702 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.884773 B =10358.319760 C =11767.108536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.536 4.536 8 H 0.081 0.919 9 C 0.024 3.976 10 C -0.603 4.603 11 S 2.593 3.407 12 O -0.977 6.977 13 O -0.982 6.982 14 O -0.662 6.662 15 C 0.021 3.979 16 C -0.089 4.089 17 C -0.121 4.121 18 C 0.162 3.838 19 N -0.654 5.654 20 C 0.537 3.463 21 O -0.560 6.560 22 C -0.197 4.197 23 C -0.138 4.138 24 C -0.156 4.156 25 C -0.114 4.114 26 C -0.106 4.106 27 H 0.267 0.733 28 H 0.006 0.994 29 H 0.011 0.989 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.435 0.565 35 H 0.160 0.840 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.187 0.813 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.783 -14.394 16.425 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.575 4.575 8 H 0.099 0.901 9 C -0.015 4.015 10 C -0.734 4.734 11 S 2.695 3.305 12 O -0.975 6.975 13 O -0.980 6.980 14 O -0.622 6.622 15 C -0.021 4.021 16 C -0.110 4.110 17 C -0.141 4.141 18 C 0.066 3.934 19 N -0.301 5.301 20 C 0.327 3.673 21 O -0.438 6.438 22 C -0.217 4.217 23 C -0.175 4.175 24 C -0.193 4.193 25 C -0.134 4.134 26 C -0.127 4.127 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.029 0.971 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.276 0.724 35 H 0.178 0.822 36 H 0.107 0.893 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.103 0.897 40 H 0.204 0.796 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 17.809 -15.611 15.883 28.515 hybrid contribution -0.210 1.486 -0.472 1.573 sum 17.599 -14.125 15.411 27.326 Atomic orbital electron populations 1.70106 1.08160 1.28369 1.50860 1.26138 0.95832 1.03943 0.94428 0.85346 0.78081 0.77161 0.79551 1.18890 1.21351 1.18340 1.21477 0.94148 0.90394 1.51514 0.90077 1.18805 0.93403 0.92692 0.96610 1.30550 1.13372 1.16263 1.13198 1.05435 0.75106 0.76819 0.73180 1.93524 1.72106 1.85247 1.46672 1.93543 1.73688 1.84271 1.46541 1.85741 1.64474 1.70519 1.41438 1.18439 0.97758 1.03926 0.81993 1.21284 0.99812 0.96869 0.93022 1.21032 0.94842 1.01502 0.96723 1.18024 0.91572 0.96643 0.87202 1.43480 1.55255 1.12875 1.18454 1.20592 0.77263 0.81688 0.87718 1.90736 1.47324 1.39498 1.66240 1.22271 1.05629 1.00448 0.93399 1.23075 0.89914 1.00542 1.03999 1.23050 1.00803 0.93309 1.02167 1.21166 1.01533 1.00112 0.90620 1.21622 0.93103 0.99011 0.98914 0.92454 0.97556 0.97095 0.82935 0.83069 0.84625 0.84159 0.72402 0.82228 0.89291 0.84722 0.85491 0.89692 0.79585 0.80878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.24 13.29 21.45 0.28 -55.96 16 2 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.98 42.01 29.54 68.60 2.03 44.04 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.54 -28.76 9.11 25.60 0.23 -28.52 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.02 1.21 4.98 29.85 0.15 1.36 16 10 C -0.60 -22.58 5.40 71.98 0.39 -22.20 16 11 S 2.59 101.31 5.17 -56.49 -0.29 101.02 16 12 O -0.98 -45.11 18.09 -118.57 -2.15 -47.25 16 13 O -0.98 -42.06 16.26 -118.57 -1.93 -43.99 16 14 O -0.66 -22.10 10.05 -62.29 -0.63 -22.73 16 15 C 0.02 0.62 4.80 22.50 0.11 0.73 16 16 C -0.09 -2.64 9.04 22.35 0.20 -2.43 16 17 C -0.12 -3.13 8.65 22.38 0.19 -2.94 16 18 C 0.16 3.22 6.28 38.11 0.24 3.46 16 19 N -0.65 -8.67 5.35 -303.38 -1.62 -10.29 16 20 C 0.54 8.91 7.35 87.66 0.64 9.55 16 21 O -0.56 -14.37 13.94 -3.07 -0.04 -14.41 16 22 C -0.20 -1.70 6.19 -11.54 -0.07 -1.77 16 23 C -0.14 -0.91 10.23 30.58 0.31 -0.60 16 24 C -0.16 -1.46 10.04 30.58 0.31 -1.15 16 25 C -0.11 -1.91 9.96 22.38 0.22 -1.69 16 26 C -0.11 -2.32 8.45 22.35 0.19 -2.13 16 27 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 28 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.15 4.73 6.60 -2.39 -0.02 4.71 16 31 H 0.15 4.86 8.14 -2.39 -0.02 4.84 16 32 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 33 H 0.14 3.73 6.41 -2.91 -0.02 3.71 16 34 H 0.44 2.16 8.82 -92.71 -0.82 1.34 16 35 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 1.24 7.67 -2.39 -0.02 1.22 16 40 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.17 2.85 7.49 -2.91 -0.02 2.83 16 Total: -1.00 -83.63 365.10 -0.51 -84.14 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.25 Total: 13.58 kcal Atomic # 6 Polarization: -51.74 SS G_CDS: 3.58 Total: -48.16 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -1.34 Total: -66.25 kcal Atomic # 8 Polarization: -123.64 SS G_CDS: -4.74 Total: -128.38 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 101.31 SS G_CDS: -0.29 Total: 101.02 kcal Total: -83.63 -0.51 -84.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.723 kcal (2) G-P(sol) polarization free energy of solvation -83.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds