Wall clock time and date at job start Tue Mar 31 2020 22:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34233 * 116.99819 * 2 1 4 4 O 1.20814 * 120.00136 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99552 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46831 * 180.02562 * 5 3 2 7 7 C 1.37108 * 119.99624 * 269.99962 * 6 5 3 8 8 H 1.08006 * 119.99708 * 202.99544 * 7 6 5 9 9 C 1.38941 * 119.99965 * 22.99652 * 7 6 5 10 10 N 1.31411 * 120.00445 * 351.25311 * 9 7 6 11 11 Si 1.86804 * 119.99776 * 171.25889 * 9 7 6 12 12 H 1.48503 * 109.47369 * 89.99616 * 11 9 7 13 13 H 1.48502 * 109.46997 * 209.99882 * 11 9 7 14 14 H 1.48494 * 109.47191 * 329.99521 * 11 9 7 15 15 C 1.34772 * 120.00619 * 89.99862 * 6 5 3 16 16 O 1.21299 * 119.99815 * 5.01335 * 15 6 5 17 17 C 1.50699 * 120.00655 * 185.01940 * 15 6 5 18 18 C 1.52996 * 109.47527 * 174.79830 * 17 15 6 19 19 C 1.50703 * 109.47184 * 180.02562 * 18 17 15 20 20 O 1.21449 * 120.00261 * 359.97438 * 19 18 17 21 21 C 1.41233 * 119.99922 * 179.97438 * 19 18 17 22 22 C 1.37188 * 125.48089 * 179.97438 * 21 19 18 23 23 C 1.37202 * 113.24413 * 180.02562 * 22 21 19 24 24 C 1.34023 * 115.14591 * 0.02562 * 23 22 21 25 25 C 1.50696 * 124.49851 * 179.97438 * 24 23 22 26 26 S 1.70608 * 111.00149 * 0.02562 * 24 23 22 27 27 H 1.09000 * 109.47488 * 59.99792 * 1 2 3 28 28 H 1.09004 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47526 * 299.99436 * 1 2 3 30 30 H 1.08995 * 109.47426 * 60.00386 * 5 3 2 31 31 H 1.09006 * 109.47459 * 299.99916 * 5 3 2 32 32 H 0.96996 * 120.00519 * 185.01254 * 10 9 7 33 33 H 1.09001 * 109.47218 * 54.79510 * 17 15 6 34 34 H 1.08998 * 109.46928 * 294.79867 * 17 15 6 35 35 H 1.08998 * 109.47570 * 59.99894 * 18 17 15 36 36 H 1.09007 * 109.46809 * 299.99780 * 18 17 15 37 37 H 1.08002 * 123.37560 * 0.02562 * 22 21 19 38 38 H 1.07996 * 122.42646 * 180.02562 * 23 22 21 39 39 H 1.08998 * 109.47356 * 180.02562 * 25 24 23 40 40 H 1.09009 * 109.46893 * 300.02630 * 25 24 23 41 41 H 1.08997 * 109.47359 * 60.02296 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.1754 3.3378 -1.1869 8 1 4.8138 4.2082 -1.2238 9 6 3.5507 2.8850 -2.3424 10 7 2.9157 1.7345 -2.3383 11 14 3.6134 3.9116 -3.9017 12 1 4.8088 3.5317 -4.6968 13 1 2.3876 3.6686 -4.7040 14 1 3.6937 5.3506 -3.5441 15 6 4.1732 3.3253 1.1676 16 8 4.0907 2.7204 2.2157 17 6 4.4897 4.7986 1.1709 18 6 4.5306 5.3083 2.6129 19 6 4.8466 6.7819 2.6161 20 8 5.0225 7.3675 1.5668 21 6 4.9381 7.4818 3.8394 22 6 5.2189 8.8179 3.9732 23 6 5.2467 9.2372 5.2793 24 6 4.9992 8.2843 6.1887 25 6 4.9776 8.5111 7.6784 26 16 4.7131 6.7802 5.4360 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 3.9556 0.7810 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 2.5421 1.3838 -3.1619 33 1 3.7205 5.3368 0.6170 34 1 5.4588 4.9631 0.6998 35 1 5.2999 4.7702 3.1668 36 1 3.5615 5.1439 3.0840 37 1 5.3998 9.4739 3.1346 38 1 5.4531 10.2609 5.5547 39 1 4.7526 7.5729 8.1855 40 1 5.9516 8.8760 8.0045 41 1 4.2130 9.2485 7.9226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120492933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:47 Heat of formation + Delta-G solvation = -117.726423 kcal Electronic energy + Delta-G solvation = -26759.753183 eV Core-core repulsion = 22732.365422 eV Total energy + Delta-G solvation = -4027.387761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.76339 -39.34366 -38.27758 -37.62370 -35.47373 -34.54976 -32.57036 -32.08679 -31.52386 -28.87488 -27.97151 -26.35650 -25.22139 -24.21010 -23.28659 -20.95118 -19.99372 -19.16137 -18.86003 -17.42148 -16.86007 -16.52572 -16.11070 -15.90361 -15.57078 -15.29834 -15.18983 -14.61499 -14.34089 -14.29365 -13.98268 -13.94675 -13.72007 -13.36249 -12.73993 -12.69186 -12.50325 -12.30872 -12.19878 -11.91717 -11.87808 -11.58074 -11.31608 -11.25023 -11.17487 -10.95318 -10.75555 -10.53055 -10.50955 -10.39034 -9.80060 -9.62876 -9.49706 -8.98293 -8.78485 -8.73415 -8.60013 -7.94361 -6.43090 -4.05694 0.21464 1.36848 1.78049 2.10645 2.98090 3.10723 3.21769 3.25857 3.50644 3.75470 4.01905 4.12677 4.23342 4.49871 4.83217 4.88723 5.04219 5.15121 5.15573 5.25924 5.35192 5.57231 5.61303 5.62368 5.71911 5.79196 5.84917 5.97190 5.99297 6.15351 6.21723 6.23680 6.32996 6.50211 6.57400 6.67447 6.92964 7.35517 7.50825 7.65427 7.69530 8.26876 8.99153 9.15416 9.36351 9.75771 10.58433 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.002940 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.137808 B = 9522.983523 C =10922.157545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.491 3.509 4 O -0.515 6.515 5 C 0.153 3.847 6 N -0.432 5.432 7 C -0.325 4.325 8 H 0.105 0.895 9 C 0.042 3.958 10 N -0.886 5.886 11 Si 0.932 3.068 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.471 3.529 16 O -0.607 6.607 17 C -0.106 4.106 18 C -0.151 4.151 19 C 0.419 3.581 20 O -0.449 6.449 21 C -0.300 4.300 22 C -0.048 4.048 23 C -0.165 4.165 24 C -0.201 4.201 25 C -0.086 4.086 26 S 0.239 5.761 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.273 0.727 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 7.513 13.340 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.333 3.667 4 O -0.401 6.401 5 C 0.028 3.972 6 N -0.151 5.151 7 C -0.452 4.452 8 H 0.122 0.878 9 C -0.161 4.161 10 N -0.526 5.526 11 Si 0.758 3.242 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.191 1.191 15 C 0.261 3.739 16 O -0.493 6.493 17 C -0.146 4.146 18 C -0.189 4.189 19 C 0.298 3.702 20 O -0.327 6.327 21 C -0.419 4.419 22 C -0.081 4.081 23 C -0.196 4.196 24 C -0.321 4.321 25 C -0.144 4.144 26 S 0.508 5.492 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.169 0.831 38 H 0.159 0.841 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.044 6.268 13.689 15.194 hybrid contribution -0.090 2.030 -1.538 2.548 sum 1.953 8.298 12.151 14.843 Atomic orbital electron populations 1.22912 0.79006 1.01732 1.01459 1.86465 1.21393 1.35543 1.85641 1.23986 0.92369 0.80387 0.69959 1.90496 1.66732 1.36481 1.46392 1.20651 0.86879 0.85687 1.04008 1.43337 1.57874 1.08428 1.05430 1.19728 1.27534 1.12914 0.85019 0.87785 1.25291 0.94198 0.96296 1.00272 1.69598 1.36527 1.17941 1.28545 0.85839 0.77678 0.80286 0.80395 1.20287 1.20820 1.19138 1.20216 0.81481 0.88915 0.83309 1.90521 1.58389 1.68844 1.31590 1.21116 1.04235 0.94128 0.95102 1.21814 1.04775 0.92157 1.00116 1.20319 0.72805 0.90812 0.86292 1.90589 1.37688 1.70790 1.33588 1.24259 1.18789 0.99313 0.99507 1.20965 0.95506 0.93821 0.97803 1.19915 1.06952 1.00943 0.91785 1.24518 1.06718 0.99419 1.01453 1.20396 1.03263 1.02950 0.87800 1.83309 1.63335 1.07414 0.95145 0.92821 0.89644 0.93263 0.84427 0.90521 0.91610 0.88835 0.89555 0.88001 0.88174 0.83120 0.84124 0.91156 0.90271 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.55 101.05 1.07 1.84 16 2 O -0.37 -8.21 10.57 -39.27 -0.41 -8.63 16 3 C 0.49 12.36 5.92 36.01 0.21 12.57 16 4 O -0.51 -14.41 15.94 -18.74 -0.30 -14.71 16 5 C 0.15 3.75 5.29 -5.19 -0.03 3.72 16 6 N -0.43 -10.98 2.11 -116.09 -0.25 -11.22 16 7 C -0.32 -8.26 9.00 -14.93 -0.13 -8.40 16 8 H 0.10 2.51 6.72 -52.48 -0.35 2.16 16 9 C 0.04 1.07 5.41 -17.47 -0.09 0.98 16 10 N -0.89 -22.90 8.21 55.50 0.46 -22.45 16 11 Si 0.93 20.17 29.57 -169.99 -5.03 15.14 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 15 C 0.47 11.39 7.62 -10.99 -0.08 11.31 16 16 O -0.61 -15.42 15.54 5.54 0.09 -15.34 16 17 C -0.11 -2.18 3.54 -27.89 -0.10 -2.28 16 18 C -0.15 -2.60 4.30 -27.88 -0.12 -2.72 16 19 C 0.42 6.84 6.93 -33.17 -0.23 6.61 16 20 O -0.45 -8.48 16.36 5.41 0.09 -8.39 16 21 C -0.30 -4.09 6.23 -38.83 -0.24 -4.34 16 22 C -0.05 -0.58 9.95 -40.34 -0.40 -0.98 16 23 C -0.17 -1.63 9.99 -41.44 -0.41 -2.04 16 24 C -0.20 -1.89 6.28 -35.79 -0.22 -2.12 16 25 C -0.09 -0.54 10.33 36.00 0.37 -0.16 16 26 S 0.24 2.63 22.35 -107.50 -2.40 0.23 16 27 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.14 3.38 6.28 -51.93 -0.33 3.06 16 31 H 0.08 1.77 7.36 -51.93 -0.38 1.39 16 32 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 33 H 0.09 2.03 7.99 -51.93 -0.41 1.62 16 34 H 0.09 1.71 7.70 -51.93 -0.40 1.31 16 35 H 0.10 1.66 8.04 -51.93 -0.42 1.24 16 36 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.15 1.72 8.02 -52.49 -0.42 1.30 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 40 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -32.45 368.74 -7.85 -40.30 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.23 Total: 5.51 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -0.42 Total: 13.99 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.21 Total: -33.67 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -0.54 Total: -47.07 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.40 Total: 0.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.45 -7.85 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120492933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.423 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds