Wall clock time and date at job start Tue Mar 31 2020 22:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34233 * 116.99819 * 2 1 4 4 O 1.20814 * 120.00136 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99552 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46831 * 180.02562 * 5 3 2 7 7 C 1.37108 * 119.99624 * 269.99962 * 6 5 3 8 8 H 1.08006 * 119.99708 * 202.99544 * 7 6 5 9 9 C 1.38941 * 119.99965 * 22.99652 * 7 6 5 10 10 N 1.31411 * 120.00445 * 351.25311 * 9 7 6 11 11 Si 1.86804 * 119.99776 * 171.25889 * 9 7 6 12 12 H 1.48503 * 109.47369 * 89.99616 * 11 9 7 13 13 H 1.48502 * 109.46997 * 209.99882 * 11 9 7 14 14 H 1.48494 * 109.47191 * 329.99521 * 11 9 7 15 15 C 1.34772 * 120.00619 * 89.99862 * 6 5 3 16 16 O 1.21299 * 119.99815 * 5.01335 * 15 6 5 17 17 C 1.50699 * 120.00655 * 185.01940 * 15 6 5 18 18 C 1.52996 * 109.47527 * 174.79830 * 17 15 6 19 19 C 1.50703 * 109.47184 * 180.02562 * 18 17 15 20 20 O 1.21449 * 120.00261 * 359.97438 * 19 18 17 21 21 C 1.41233 * 119.99922 * 179.97438 * 19 18 17 22 22 C 1.37188 * 125.48089 * 179.97438 * 21 19 18 23 23 C 1.37202 * 113.24413 * 180.02562 * 22 21 19 24 24 C 1.34023 * 115.14591 * 0.02562 * 23 22 21 25 25 C 1.50696 * 124.49851 * 179.97438 * 24 23 22 26 26 S 1.70608 * 111.00149 * 0.02562 * 24 23 22 27 27 H 1.09000 * 109.47488 * 59.99792 * 1 2 3 28 28 H 1.09004 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47526 * 299.99436 * 1 2 3 30 30 H 1.08995 * 109.47426 * 60.00386 * 5 3 2 31 31 H 1.09006 * 109.47459 * 299.99916 * 5 3 2 32 32 H 0.96996 * 120.00519 * 185.01254 * 10 9 7 33 33 H 1.09001 * 109.47218 * 54.79510 * 17 15 6 34 34 H 1.08998 * 109.46928 * 294.79867 * 17 15 6 35 35 H 1.08998 * 109.47570 * 59.99894 * 18 17 15 36 36 H 1.09007 * 109.46809 * 299.99780 * 18 17 15 37 37 H 1.08002 * 123.37560 * 0.02562 * 22 21 19 38 38 H 1.07996 * 122.42646 * 180.02562 * 23 22 21 39 39 H 1.08998 * 109.47356 * 180.02562 * 25 24 23 40 40 H 1.09009 * 109.46893 * 300.02630 * 25 24 23 41 41 H 1.08997 * 109.47359 * 60.02296 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.1754 3.3378 -1.1869 8 1 4.8138 4.2082 -1.2238 9 6 3.5507 2.8850 -2.3424 10 7 2.9157 1.7345 -2.3383 11 14 3.6134 3.9116 -3.9017 12 1 4.8088 3.5317 -4.6968 13 1 2.3876 3.6686 -4.7040 14 1 3.6937 5.3506 -3.5441 15 6 4.1732 3.3253 1.1676 16 8 4.0907 2.7204 2.2157 17 6 4.4897 4.7986 1.1709 18 6 4.5306 5.3083 2.6129 19 6 4.8466 6.7819 2.6161 20 8 5.0225 7.3675 1.5668 21 6 4.9381 7.4818 3.8394 22 6 5.2189 8.8179 3.9732 23 6 5.2467 9.2372 5.2793 24 6 4.9992 8.2843 6.1887 25 6 4.9776 8.5111 7.6784 26 16 4.7131 6.7802 5.4360 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 3.9556 0.7810 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 2.5421 1.3838 -3.1619 33 1 3.7205 5.3368 0.6170 34 1 5.4588 4.9631 0.6998 35 1 5.2999 4.7702 3.1668 36 1 3.5615 5.1439 3.0840 37 1 5.3998 9.4739 3.1346 38 1 5.4531 10.2609 5.5547 39 1 4.7526 7.5729 8.1855 40 1 5.9516 8.8760 8.0045 41 1 4.2130 9.2485 7.9226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120492933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:46 Heat of formation + Delta-G solvation = -135.382401 kcal Electronic energy + Delta-G solvation = -26760.518803 eV Core-core repulsion = 22732.365422 eV Total energy + Delta-G solvation = -4028.153382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41239 -40.89094 -40.05039 -38.59452 -37.35922 -36.51253 -33.97192 -33.48921 -33.04062 -30.53600 -29.15436 -27.91153 -26.90044 -25.63107 -24.28864 -22.35576 -21.62871 -21.03572 -19.87910 -18.91653 -18.58846 -18.31759 -17.69219 -17.33350 -16.95936 -16.92323 -16.82531 -16.21657 -16.01700 -15.60020 -15.46001 -15.00973 -14.81254 -14.39721 -14.28621 -14.20814 -14.01526 -13.63959 -13.39999 -13.23634 -13.03253 -12.97874 -12.89026 -12.82096 -12.66181 -12.62169 -12.35780 -12.16395 -12.12788 -11.78801 -11.57702 -11.47868 -10.94005 -10.91595 -10.53443 -9.90843 -9.65985 -9.58391 -8.36242 -6.04154 -0.74207 0.49810 0.92631 1.14881 1.36297 1.44197 1.54438 1.67248 1.83112 1.92102 2.17848 2.33600 2.75616 3.10562 3.26753 3.79652 3.87137 4.11795 4.20820 4.25247 4.29390 4.34720 4.36558 4.40564 4.50161 4.58982 4.67540 4.69736 4.74318 4.75248 4.90169 4.98438 5.02096 5.07047 5.09783 5.22259 5.39527 5.40858 5.63431 5.74385 6.31131 6.44784 7.03182 7.22264 7.42971 7.81868 8.64780 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.002940 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.137808 B = 9522.983523 C =10922.157545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.374 6.374 3 C 0.493 3.507 4 O -0.551 6.551 5 C 0.151 3.849 6 N -0.444 5.444 7 C -0.343 4.343 8 H 0.111 0.889 9 C 0.002 3.998 10 N -0.903 5.903 11 Si 0.993 3.007 12 H -0.262 1.262 13 H -0.288 1.288 14 H -0.268 1.268 15 C 0.462 3.538 16 O -0.623 6.623 17 C -0.097 4.097 18 C -0.144 4.144 19 C 0.428 3.572 20 O -0.488 6.488 21 C -0.345 4.345 22 C -0.037 4.037 23 C -0.176 4.176 24 C -0.178 4.178 25 C -0.089 4.089 26 S 0.242 5.758 27 H 0.043 0.957 28 H 0.134 0.866 29 H 0.051 0.949 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.273 0.727 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.151 0.849 38 H 0.170 0.830 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 8.539 14.832 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.337 3.663 4 O -0.440 6.440 5 C 0.025 3.975 6 N -0.163 5.163 7 C -0.470 4.470 8 H 0.128 0.872 9 C -0.198 4.198 10 N -0.543 5.543 11 Si 0.817 3.183 12 H -0.187 1.187 13 H -0.214 1.214 14 H -0.193 1.193 15 C 0.252 3.748 16 O -0.511 6.511 17 C -0.137 4.137 18 C -0.181 4.181 19 C 0.310 3.690 20 O -0.369 6.369 21 C -0.462 4.462 22 C -0.072 4.072 23 C -0.205 4.205 24 C -0.299 4.299 25 C -0.147 4.147 26 S 0.510 5.490 27 H 0.062 0.938 28 H 0.152 0.848 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.169 0.831 38 H 0.187 0.813 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.235 7.257 15.200 16.991 hybrid contribution -0.205 1.661 -1.848 2.493 sum 2.030 8.918 13.352 16.184 Atomic orbital electron populations 1.23287 0.76356 1.04850 1.01090 1.86429 1.23937 1.33738 1.84949 1.24037 0.92596 0.80660 0.69034 1.90467 1.67525 1.37769 1.48238 1.20679 0.86985 0.85719 1.04091 1.43555 1.57990 1.08846 1.05870 1.20016 1.28238 1.13394 0.85351 0.87184 1.26075 0.93774 0.97102 1.02864 1.69685 1.36789 1.18812 1.29050 0.84911 0.77778 0.78609 0.77015 1.18652 1.21374 1.19258 1.20798 0.80943 0.90174 0.82842 1.90487 1.59119 1.69553 1.31988 1.21025 1.03783 0.91581 0.97306 1.21750 1.05104 0.93434 0.97853 1.20234 0.71664 0.90065 0.87022 1.90568 1.40221 1.71128 1.34977 1.24006 1.22499 1.00243 0.99484 1.21206 0.93712 0.93151 0.99091 1.20153 1.07190 1.02469 0.90652 1.25021 1.03594 0.98093 1.03161 1.20597 1.04898 1.04049 0.85185 1.83290 1.63360 1.08536 0.93774 0.93847 0.84776 0.93029 0.84787 0.89751 0.91669 0.90353 0.89003 0.87085 0.88337 0.83123 0.81272 0.90361 0.88406 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.55 113.37 1.20 2.49 16 2 O -0.37 -16.33 10.57 -51.45 -0.54 -16.88 16 3 C 0.49 25.16 5.92 71.24 0.42 25.58 16 4 O -0.55 -31.46 15.94 22.00 0.35 -31.11 16 5 C 0.15 7.52 5.29 85.63 0.45 7.97 16 6 N -0.44 -23.10 2.11 -639.60 -1.35 -24.45 16 7 C -0.34 -17.77 9.00 84.04 0.76 -17.01 16 8 H 0.11 5.41 6.72 -2.91 -0.02 5.39 16 9 C 0.00 0.12 5.41 84.92 0.46 0.58 16 10 N -0.90 -47.13 8.21 21.66 0.18 -46.95 16 11 Si 0.99 41.47 29.57 68.60 2.03 43.50 16 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 13 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 15 C 0.46 22.91 7.62 87.66 0.67 23.58 16 16 O -0.62 -32.29 15.54 -3.09 -0.05 -32.34 16 17 C -0.10 -4.13 3.54 29.85 0.11 -4.03 16 18 C -0.14 -5.08 4.30 29.85 0.13 -4.95 16 19 C 0.43 14.34 6.93 26.42 0.18 14.52 16 20 O -0.49 -19.07 16.36 -3.56 -0.06 -19.13 16 21 C -0.34 -9.32 6.23 22.76 0.14 -9.18 16 22 C -0.04 -0.86 9.95 21.78 0.22 -0.64 16 23 C -0.18 -2.98 9.99 21.07 0.21 -2.77 16 24 C -0.18 -2.84 6.28 24.72 0.16 -2.69 16 25 C -0.09 -0.77 10.33 71.23 0.74 -0.03 16 26 S 0.24 5.02 22.35 -56.49 -1.26 3.76 16 27 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16 28 H 0.13 3.24 8.14 -2.39 -0.02 3.23 16 29 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 30 H 0.13 6.74 6.28 -2.39 -0.02 6.73 16 31 H 0.08 3.99 7.36 -2.38 -0.02 3.98 16 32 H 0.27 13.67 8.32 -92.71 -0.77 12.89 16 33 H 0.08 3.56 7.99 -2.39 -0.02 3.54 16 34 H 0.09 3.75 7.70 -2.39 -0.02 3.73 16 35 H 0.11 3.68 8.04 -2.39 -0.02 3.66 16 36 H 0.10 3.49 8.14 -2.38 -0.02 3.47 16 37 H 0.15 3.38 8.02 -2.91 -0.02 3.35 16 38 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.08 0.59 8.11 -2.39 -0.02 0.58 16 40 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -71.01 368.74 6.18 -64.83 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 1.06 Total: 25.35 kcal Atomic # 6 Polarization: 27.59 SS G_CDS: 5.83 Total: 33.42 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -1.17 Total: -71.40 kcal Atomic # 8 Polarization: -99.15 SS G_CDS: -0.30 Total: -99.45 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.26 Total: 3.76 kcal Total: -71.01 6.18 -64.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120492933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.551 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds