Wall clock time and date at job start Tue Mar 31 2020 22:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00470 * 2 1 4 4 H 1.48503 * 109.47423 * 240.00367 * 3 2 1 5 5 H 1.48502 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47157 * 120.00226 * 3 2 1 7 7 C 1.37885 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99866 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47406 * 180.02562 * 9 7 2 11 11 S 1.65602 * 120.00510 * 164.99678 * 10 9 7 12 12 O 1.42102 * 106.40061 * 311.46140 * 11 10 9 13 13 O 1.42101 * 106.40379 * 178.54001 * 11 10 9 14 14 C 1.76203 * 107.21566 * 64.99877 * 11 10 9 15 15 C 1.38368 * 119.84562 * 90.00306 * 14 11 10 16 16 C 1.37945 * 120.14604 * 179.97438 * 15 14 11 17 17 C 1.39630 * 119.84903 * 0.02562 * 16 15 14 18 18 C 1.47727 * 120.14599 * 179.97438 * 17 16 15 19 19 O 1.21462 * 120.00463 * 359.97438 * 18 17 16 20 20 O 1.34715 * 119.99550 * 179.97438 * 18 17 16 21 21 C 1.45196 * 116.99791 * 179.97438 * 20 18 17 22 22 C 1.53008 * 109.47124 * 179.97438 * 21 20 18 23 23 C 1.52992 * 117.49845 * 243.62157 * 22 21 20 24 24 C 1.52993 * 60.00131 * 252.51100 * 23 22 21 25 25 C 1.39627 * 119.70205 * 0.24739 * 17 16 15 26 26 C 1.37947 * 119.84109 * 359.45449 * 25 17 16 27 27 H 0.96996 * 119.99457 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47850 * 59.99637 * 9 7 2 29 29 H 1.09003 * 109.46818 * 299.99812 * 9 7 2 30 30 H 0.97010 * 119.99587 * 344.99675 * 10 9 7 31 31 H 1.07997 * 119.92883 * 359.97438 * 15 14 11 32 32 H 1.07997 * 120.07485 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.47465 * 300.00039 * 21 20 18 34 34 H 1.08999 * 109.47008 * 60.00049 * 21 20 18 35 35 H 1.08997 * 115.54371 * 29.33451 * 22 21 20 36 36 H 1.09001 * 117.50395 * 0.02562 * 23 22 21 37 37 H 1.09003 * 117.49866 * 145.01972 * 23 22 21 38 38 H 1.09004 * 117.50326 * 252.51108 * 24 23 22 39 39 H 1.09003 * 117.49764 * 107.49590 * 24 23 22 40 40 H 1.07991 * 120.07461 * 179.75198 * 25 17 16 41 41 H 1.08003 * 119.92013 * 180.27609 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2028 -3.6127 -0.0015 11 16 1.6876 -5.1424 0.3687 12 8 0.9237 -5.0308 1.5617 13 8 2.8232 -5.9882 0.2492 14 6 0.5649 -5.6351 -0.8968 15 6 1.0381 -6.2874 -2.0215 16 6 0.1646 -6.6763 -3.0158 17 6 -1.1998 -6.4099 -2.8854 18 6 -2.1411 -6.8230 -3.9464 19 8 -1.7286 -7.3953 -4.9352 20 8 -3.4570 -6.5649 -3.8173 21 6 -4.3230 -6.9989 -4.8989 22 6 -5.7704 -6.6220 -4.5758 23 6 -6.7736 -7.7627 -4.3940 24 6 -6.8267 -6.8902 -5.6496 25 6 -1.6698 -5.7462 -1.7504 26 6 -0.7860 -5.3684 -0.7610 27 1 -0.4849 0.8401 0.0004 28 1 0.6245 -2.5564 -0.8919 29 1 0.6240 -2.5574 0.8881 30 1 3.1350 -3.4540 -0.2182 31 1 2.0938 -6.4925 -2.1213 32 1 0.5353 -7.1850 -3.8934 33 1 -4.0187 -6.5124 -5.8256 34 1 -4.2465 -8.0801 -5.0140 35 1 -5.8977 -5.7354 -3.9548 36 1 -6.4026 -8.7817 -4.5041 37 1 -7.5614 -7.6267 -3.6530 38 1 -7.6493 -6.1801 -5.7348 39 1 -6.4906 -7.3351 -6.5863 40 1 -2.7233 -5.5336 -1.6453 41 1 -1.1487 -4.8590 0.1196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126249283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:48 Heat of formation + Delta-G solvation = -111.404069 kcal Electronic energy + Delta-G solvation = -26101.552374 eV Core-core repulsion = 22074.438771 eV Total energy + Delta-G solvation = -4027.113603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84937 -38.99342 -37.84822 -36.82776 -36.34492 -35.44227 -34.70101 -32.21453 -31.89972 -31.20656 -28.30476 -26.80027 -24.78118 -22.97882 -22.83708 -22.51430 -21.31360 -21.17010 -19.20072 -18.33840 -17.77291 -17.50132 -17.06315 -16.69909 -15.98067 -15.85836 -15.58058 -14.97660 -14.86380 -14.62324 -14.45923 -13.89483 -13.73849 -13.70341 -13.48172 -12.96801 -12.88388 -12.59091 -12.17356 -12.00301 -11.88379 -11.84663 -11.70837 -11.61784 -11.36929 -11.32619 -11.13627 -10.96769 -10.87254 -10.80055 -10.56827 -10.35212 -10.17077 -9.56021 -9.50784 -9.16620 -8.96473 -8.30114 -6.22315 -4.27089 0.14111 0.86967 1.19958 2.16602 2.22177 3.24465 3.29228 3.30490 3.31371 3.37483 3.66154 4.09785 4.15390 4.31075 4.36231 4.40967 4.48322 4.64903 4.75962 4.77742 4.86220 4.99650 5.11742 5.14889 5.18314 5.19425 5.36892 5.43560 5.45816 5.65134 5.67078 5.82906 5.87679 5.98730 6.06104 6.12116 6.35076 6.61468 7.20993 7.26616 7.43902 7.71660 7.75268 8.11330 8.76533 9.38122 10.87990 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.002799 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.094551 B =10001.839925 C =11683.539995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.245 3.755 10 N -1.100 6.100 11 S 2.689 3.311 12 O -0.956 6.956 13 O -0.975 6.975 14 C -0.637 4.637 15 C -0.032 4.032 16 C -0.080 4.080 17 C -0.083 4.083 18 C 0.512 3.488 19 O -0.503 6.503 20 O -0.346 6.346 21 C 0.099 3.901 22 C -0.160 4.160 23 C -0.176 4.176 24 C -0.169 4.169 25 C -0.082 4.082 26 C -0.026 4.026 27 H 0.267 0.733 28 H 0.022 0.978 29 H 0.040 0.960 30 H 0.412 0.588 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.147 0.853 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.685 -13.888 -8.936 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.122 3.878 10 N -0.863 5.863 11 S 2.775 3.225 12 O -0.946 6.946 13 O -0.965 6.965 14 C -0.721 4.721 15 C -0.051 4.051 16 C -0.099 4.099 17 C -0.084 4.084 18 C 0.357 3.643 19 O -0.391 6.391 20 O -0.262 6.262 21 C 0.026 3.974 22 C -0.178 4.178 23 C -0.213 4.213 24 C -0.206 4.206 25 C -0.101 4.101 26 C -0.045 4.045 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.247 0.753 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.165 0.835 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.763 -14.478 -8.510 19.426 hybrid contribution 0.244 1.086 -1.023 1.512 sum -9.518 -13.392 -9.533 18.996 Atomic orbital electron populations 1.69916 1.06048 1.27540 1.49265 1.24965 0.94993 0.99464 0.94707 0.86465 0.79438 0.82186 0.78790 1.20089 1.21108 1.19984 1.21140 0.93456 0.89835 1.52663 0.91592 1.19124 0.87802 0.83516 0.97391 1.55448 1.19676 1.23540 1.87627 1.02044 0.73265 0.73002 0.74177 1.93582 1.72577 1.86314 1.42136 1.93541 1.49203 1.66617 1.87138 1.31646 1.11593 1.11126 1.17765 1.20887 1.00630 0.92852 0.90723 1.21322 0.91099 0.98115 0.99361 1.19351 0.92717 1.02176 0.94163 1.21185 0.81534 0.75910 0.85712 1.90833 1.78656 1.38872 1.30779 1.86537 1.18146 1.74331 1.47234 1.22592 0.86776 0.99845 0.88206 1.22149 0.89123 1.01868 1.04703 1.23125 1.01936 0.95882 1.00333 1.23008 1.00433 1.03382 0.93734 1.21591 1.01127 0.95306 0.92051 1.21069 0.91068 0.93707 0.98605 0.92354 0.95970 0.94190 0.75300 0.83250 0.83785 0.90445 0.90860 0.86110 0.88507 0.88195 0.87955 0.88439 0.83507 0.82891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -13.77 9.27 -34.44 -0.32 -14.09 16 8 H 0.07 1.63 7.65 -52.49 -0.40 1.23 16 9 C 0.24 5.76 5.98 -5.20 -0.03 5.73 16 10 N -1.10 -20.96 5.99 -11.66 -0.07 -21.03 16 11 S 2.69 46.83 5.73 -107.50 -0.62 46.21 16 12 O -0.96 -19.27 16.74 -57.17 -0.96 -20.23 16 13 O -0.97 -17.66 17.27 -57.17 -0.99 -18.65 16 14 C -0.64 -9.86 5.95 -39.49 -0.24 -10.10 16 15 C -0.03 -0.44 9.50 -39.64 -0.38 -0.82 16 16 C -0.08 -1.05 9.60 -39.17 -0.38 -1.42 16 17 C -0.08 -1.12 5.87 -104.98 -0.62 -1.73 16 18 C 0.51 6.81 7.90 34.61 0.27 7.08 16 19 O -0.50 -7.47 16.14 -19.24 -0.31 -7.78 16 20 O -0.35 -4.06 9.47 -40.53 -0.38 -4.44 16 21 C 0.10 0.93 5.76 37.16 0.21 1.14 16 22 C -0.16 -1.23 6.07 -90.62 -0.55 -1.78 16 23 C -0.18 -1.12 10.18 -26.74 -0.27 -1.39 16 24 C -0.17 -1.01 10.25 -26.74 -0.27 -1.28 16 25 C -0.08 -1.08 9.62 -39.17 -0.38 -1.46 16 26 C -0.03 -0.38 9.50 -39.64 -0.38 -0.76 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 30 H 0.41 7.13 8.54 -34.47 -0.29 6.84 16 31 H 0.15 1.77 7.60 -52.49 -0.40 1.37 16 32 H 0.14 1.64 7.65 -52.49 -0.40 1.24 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 35 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.15 1.62 7.61 -52.49 -0.40 1.22 16 41 H 0.15 2.21 7.60 -52.48 -0.40 1.81 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -32.37 373.84 -10.58 -42.95 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.19 Total: 5.24 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -3.41 Total: -19.31 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.67 Total: -44.96 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -2.64 Total: -51.10 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 46.83 SS G_CDS: -0.62 Total: 46.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.37 -10.58 -42.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126249283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.453 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds