Wall clock time and date at job start Tue Mar 31 2020 22:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00470 * 2 1 4 4 H 1.48503 * 109.47423 * 240.00367 * 3 2 1 5 5 H 1.48502 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47157 * 120.00226 * 3 2 1 7 7 C 1.37885 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99866 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47406 * 180.02562 * 9 7 2 11 11 S 1.65602 * 120.00510 * 164.99678 * 10 9 7 12 12 O 1.42102 * 106.40061 * 311.46140 * 11 10 9 13 13 O 1.42101 * 106.40379 * 178.54001 * 11 10 9 14 14 C 1.76203 * 107.21566 * 64.99877 * 11 10 9 15 15 C 1.38368 * 119.84562 * 90.00306 * 14 11 10 16 16 C 1.37945 * 120.14604 * 179.97438 * 15 14 11 17 17 C 1.39630 * 119.84903 * 0.02562 * 16 15 14 18 18 C 1.47727 * 120.14599 * 179.97438 * 17 16 15 19 19 O 1.21462 * 120.00463 * 359.97438 * 18 17 16 20 20 O 1.34715 * 119.99550 * 179.97438 * 18 17 16 21 21 C 1.45196 * 116.99791 * 179.97438 * 20 18 17 22 22 C 1.53008 * 109.47124 * 179.97438 * 21 20 18 23 23 C 1.52992 * 117.49845 * 243.62157 * 22 21 20 24 24 C 1.52993 * 60.00131 * 252.51100 * 23 22 21 25 25 C 1.39627 * 119.70205 * 0.24739 * 17 16 15 26 26 C 1.37947 * 119.84109 * 359.45449 * 25 17 16 27 27 H 0.96996 * 119.99457 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47850 * 59.99637 * 9 7 2 29 29 H 1.09003 * 109.46818 * 299.99812 * 9 7 2 30 30 H 0.97010 * 119.99587 * 344.99675 * 10 9 7 31 31 H 1.07997 * 119.92883 * 359.97438 * 15 14 11 32 32 H 1.07997 * 120.07485 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.47465 * 300.00039 * 21 20 18 34 34 H 1.08999 * 109.47008 * 60.00049 * 21 20 18 35 35 H 1.08997 * 115.54371 * 29.33451 * 22 21 20 36 36 H 1.09001 * 117.50395 * 0.02562 * 23 22 21 37 37 H 1.09003 * 117.49866 * 145.01972 * 23 22 21 38 38 H 1.09004 * 117.50326 * 252.51108 * 24 23 22 39 39 H 1.09003 * 117.49764 * 107.49590 * 24 23 22 40 40 H 1.07991 * 120.07461 * 179.75198 * 25 17 16 41 41 H 1.08003 * 119.92013 * 180.27609 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2028 -3.6127 -0.0015 11 16 1.6876 -5.1424 0.3687 12 8 0.9237 -5.0308 1.5617 13 8 2.8232 -5.9882 0.2492 14 6 0.5649 -5.6351 -0.8968 15 6 1.0381 -6.2874 -2.0215 16 6 0.1646 -6.6763 -3.0158 17 6 -1.1998 -6.4099 -2.8854 18 6 -2.1411 -6.8230 -3.9464 19 8 -1.7286 -7.3953 -4.9352 20 8 -3.4570 -6.5649 -3.8173 21 6 -4.3230 -6.9989 -4.8989 22 6 -5.7704 -6.6220 -4.5758 23 6 -6.7736 -7.7627 -4.3940 24 6 -6.8267 -6.8902 -5.6496 25 6 -1.6698 -5.7462 -1.7504 26 6 -0.7860 -5.3684 -0.7610 27 1 -0.4849 0.8401 0.0004 28 1 0.6245 -2.5564 -0.8919 29 1 0.6240 -2.5574 0.8881 30 1 3.1350 -3.4540 -0.2182 31 1 2.0938 -6.4925 -2.1213 32 1 0.5353 -7.1850 -3.8934 33 1 -4.0187 -6.5124 -5.8256 34 1 -4.2465 -8.0801 -5.0140 35 1 -5.8977 -5.7354 -3.9548 36 1 -6.4026 -8.7817 -4.5041 37 1 -7.5614 -7.6267 -3.6530 38 1 -7.6493 -6.1801 -5.7348 39 1 -6.4906 -7.3351 -6.5863 40 1 -2.7233 -5.5336 -1.6453 41 1 -1.1487 -4.8590 0.1196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126249283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:47 Heat of formation + Delta-G solvation = -131.629423 kcal Electronic energy + Delta-G solvation = -26102.429412 eV Core-core repulsion = 22074.438771 eV Total energy + Delta-G solvation = -4027.990640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86028 -40.03749 -38.56120 -38.32660 -37.22269 -36.95451 -36.47097 -34.12086 -33.01695 -32.30303 -29.07512 -28.71762 -25.85637 -24.51302 -23.97303 -23.31141 -22.36642 -21.79094 -20.62079 -19.46423 -19.19381 -18.79496 -18.20154 -17.71915 -17.61672 -17.22404 -16.66433 -16.39899 -15.91168 -15.84340 -15.35940 -15.19661 -14.79312 -14.71617 -14.70423 -14.47352 -14.08952 -13.97154 -13.85535 -13.57558 -13.22957 -13.13522 -12.72703 -12.56191 -12.55643 -12.47264 -12.41330 -12.21424 -12.15931 -12.06870 -11.85183 -11.42627 -11.38193 -10.96276 -10.84600 -10.68348 -10.25736 -10.11417 -8.23262 -6.34561 -1.00697 -0.54288 0.11178 1.07974 1.31200 1.46837 1.48553 1.56190 2.06701 2.37215 2.44410 2.75557 2.77858 3.12062 3.26499 3.28088 3.62671 3.71956 3.73666 3.86052 4.02922 4.09155 4.13008 4.19999 4.30640 4.39994 4.45887 4.60952 4.74896 4.77100 4.77367 4.86154 4.97891 4.98253 5.06297 5.20634 5.25380 5.29505 5.32956 5.52065 5.76191 5.99195 6.32187 6.43325 6.79156 7.34826 8.87443 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.002799 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.094551 B =10001.839925 C =11683.539995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.257 3.743 10 N -1.100 6.100 11 S 2.709 3.291 12 O -0.987 6.987 13 O -0.979 6.979 14 C -0.646 4.646 15 C -0.033 4.033 16 C -0.077 4.077 17 C -0.086 4.086 18 C 0.516 3.484 19 O -0.520 6.520 20 O -0.347 6.347 21 C 0.095 3.905 22 C -0.176 4.176 23 C -0.174 4.174 24 C -0.158 4.158 25 C -0.077 4.077 26 C -0.041 4.041 27 H 0.268 0.732 28 H 0.015 0.985 29 H 0.016 0.984 30 H 0.420 0.580 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.167 0.833 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 -14.178 -10.165 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.093 0.907 9 C 0.132 3.868 10 N -0.862 5.862 11 S 2.799 3.201 12 O -0.977 6.977 13 O -0.969 6.969 14 C -0.734 4.734 15 C -0.052 4.052 16 C -0.096 4.096 17 C -0.088 4.088 18 C 0.362 3.638 19 O -0.410 6.410 20 O -0.263 6.263 21 C 0.022 3.978 22 C -0.194 4.194 23 C -0.211 4.211 24 C -0.195 4.195 25 C -0.096 4.096 26 C -0.060 4.060 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.256 0.744 31 H 0.187 0.813 32 H 0.181 0.819 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.185 0.815 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.803 -14.765 -9.711 20.209 hybrid contribution 0.185 1.067 -0.703 1.291 sum -9.618 -13.698 -10.414 19.712 Atomic orbital electron populations 1.70031 1.07515 1.28414 1.50298 1.25839 0.95812 1.03022 0.94351 0.85439 0.78189 0.77898 0.79120 1.19092 1.20961 1.19449 1.21596 0.94196 0.90966 1.52205 0.90737 1.18715 0.87998 0.84256 0.95808 1.55258 1.19673 1.23385 1.87909 1.01188 0.72943 0.72119 0.73816 1.93539 1.73149 1.86526 1.44527 1.93528 1.49840 1.66187 1.87365 1.31248 1.11282 1.12896 1.17957 1.21151 1.01835 0.92132 0.90036 1.21563 0.90867 0.97506 0.99630 1.19542 0.93201 1.01814 0.94219 1.21101 0.82007 0.75492 0.85243 1.90823 1.79050 1.39767 1.31378 1.86534 1.17592 1.74067 1.48156 1.22816 0.87231 1.00161 0.87590 1.22128 0.88467 1.02497 1.06316 1.23218 1.01393 0.95695 1.00786 1.23119 0.99615 1.03096 0.93683 1.21758 1.01895 0.94588 0.91380 1.21171 0.91266 0.94359 0.99221 0.92277 0.96764 0.96571 0.74399 0.81300 0.81864 0.90436 0.90403 0.86575 0.88143 0.87484 0.86914 0.87703 0.81541 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.73 13.29 21.45 0.28 -51.44 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.97 41.38 29.54 68.60 2.03 43.41 16 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.55 -28.56 9.27 25.60 0.24 -28.33 16 8 H 0.07 3.63 7.65 -2.91 -0.02 3.61 16 9 C 0.26 12.30 5.98 85.63 0.51 12.81 16 10 N -1.10 -42.09 5.99 -190.80 -1.14 -43.23 16 11 S 2.71 94.51 5.73 -56.49 -0.32 94.19 16 12 O -0.99 -40.61 16.74 -128.00 -2.14 -42.76 16 13 O -0.98 -34.70 17.27 -128.00 -2.21 -36.91 16 14 C -0.65 -19.75 5.95 22.33 0.13 -19.62 16 15 C -0.03 -0.85 9.50 22.23 0.21 -0.64 16 16 C -0.08 -1.88 9.60 22.54 0.22 -1.67 16 17 C -0.09 -2.22 5.87 -20.10 -0.12 -2.34 16 18 C 0.52 13.10 7.90 70.33 0.56 13.65 16 19 O -0.52 -14.77 16.14 19.96 0.32 -14.45 16 20 O -0.35 -7.77 9.47 -56.24 -0.53 -8.31 16 21 C 0.10 1.68 5.76 71.98 0.41 2.09 16 22 C -0.18 -2.48 6.07 -10.80 -0.07 -2.54 16 23 C -0.17 -1.92 10.18 30.59 0.31 -1.61 16 24 C -0.16 -1.60 10.25 30.59 0.31 -1.28 16 25 C -0.08 -1.99 9.62 22.54 0.22 -1.77 16 26 C -0.04 -1.22 9.50 22.23 0.21 -1.01 16 27 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.02 0.85 7.75 -2.39 -0.02 0.84 16 30 H 0.42 14.41 8.54 -96.73 -0.83 13.58 16 31 H 0.17 3.66 7.60 -2.91 -0.02 3.64 16 32 H 0.16 3.35 7.65 -2.91 -0.02 3.33 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.29 7.87 -2.39 -0.02 1.27 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.10 1.03 8.03 -2.39 -0.02 1.01 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.17 3.50 7.61 -2.92 -0.02 3.48 16 41 H 0.15 4.47 7.60 -2.91 -0.02 4.45 16 Total: -1.00 -67.69 373.84 0.13 -67.56 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.24 Total: 23.19 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 3.61 Total: -31.26 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -0.86 Total: -94.68 kcal Atomic # 8 Polarization: -97.86 SS G_CDS: -4.56 Total: -102.42 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 94.51 SS G_CDS: -0.32 Total: 94.19 kcal Total: -67.69 0.13 -67.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126249283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.072 kcal (2) G-P(sol) polarization free energy of solvation -67.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds