Wall clock time and date at job start Tue Mar 31 2020 23:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99955 * 2 1 4 4 C 1.53008 * 109.47269 * 124.99663 * 3 2 1 5 5 O 1.45195 * 109.47065 * 180.02562 * 4 3 2 6 6 C 1.34717 * 116.99524 * 180.02562 * 5 4 3 7 7 O 1.21462 * 120.00170 * 359.97438 * 6 5 4 8 8 C 1.47729 * 119.99714 * 180.02562 * 6 5 4 9 9 C 1.39622 * 120.15060 * 180.02562 * 8 6 5 10 10 C 1.37945 * 119.84969 * 180.02562 * 9 8 6 11 11 C 1.38365 * 120.15161 * 0.02562 * 10 9 8 12 12 S 1.76197 * 119.85065 * 179.97438 * 11 10 9 13 13 O 1.42100 * 106.39925 * 336.45651 * 12 11 10 14 14 O 1.42103 * 106.39966 * 203.53767 * 12 11 10 15 15 N 1.65597 * 107.21750 * 89.99747 * 12 11 10 16 16 C 1.46506 * 120.00079 * 65.00357 * 15 12 11 17 17 C 1.50699 * 109.47214 * 164.72113 * 16 15 12 18 18 H 1.07997 * 119.99775 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99982 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99946 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.46923 * 89.99901 * 21 19 17 23 23 H 1.48494 * 109.47285 * 209.99436 * 21 19 17 24 24 H 1.48494 * 109.47464 * 329.99875 * 21 19 17 25 25 C 1.38370 * 120.29814 * 0.23362 * 11 10 9 26 26 C 1.37943 * 120.15314 * 359.48790 * 25 11 10 27 27 H 1.08000 * 119.99573 * 179.97438 * 1 2 3 28 28 H 1.07993 * 119.99870 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.00012 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47296 * 4.99927 * 3 2 1 31 31 H 1.08998 * 109.47583 * 244.99691 * 3 2 1 32 32 H 1.09002 * 109.46746 * 59.99927 * 4 3 2 33 33 H 1.08998 * 109.46841 * 300.00482 * 4 3 2 34 34 H 1.08004 * 120.07280 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.92448 * 179.97438 * 10 9 8 36 36 H 0.97005 * 120.00050 * 244.72378 * 15 12 11 37 37 H 1.08999 * 109.46682 * 284.72550 * 16 15 12 38 38 H 1.09000 * 109.47243 * 44.71866 * 16 15 12 39 39 H 0.96999 * 119.99434 * 180.02562 * 20 19 17 40 40 H 1.07998 * 119.92018 * 179.72619 * 25 11 10 41 41 H 1.07998 * 120.07644 * 180.25923 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7605 2.5908 1.1820 6 6 4.6628 2.7760 2.1651 7 8 4.8383 1.9108 2.9993 8 6 5.4381 4.0320 2.2291 9 6 6.3744 4.2271 3.2462 10 6 7.0945 5.4024 3.3004 11 6 6.8902 6.3871 2.3500 12 16 7.8138 7.8856 2.4271 13 8 8.2265 8.0333 3.7788 14 8 7.0491 8.8642 1.7364 15 7 9.1929 7.6575 1.5393 16 6 9.1055 7.4386 0.0933 17 6 10.4649 7.6331 -0.5273 18 1 11.3094 7.8941 0.0932 19 6 10.6304 7.4778 -1.8873 20 7 11.8167 7.6480 -2.4290 21 14 9.1695 7.0271 -2.9605 22 1 8.5022 8.2665 -3.4341 23 1 9.6380 6.2398 -4.1291 24 1 8.2068 6.2172 -2.1717 25 6 5.9600 6.2024 1.3424 26 6 5.2371 5.0296 1.2730 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 1.8501 -0.9354 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 3.7400 0.5066 1.0922 33 1 2.4772 1.2356 2.1130 34 1 6.5340 3.4598 3.9894 35 1 7.8188 5.5548 4.0869 36 1 10.0590 7.6729 1.9760 37 1 8.7596 6.4233 -0.1001 38 1 8.4030 8.1505 -0.3401 39 1 11.9330 7.5391 -3.3858 40 1 5.8023 6.9768 0.6063 41 1 4.5144 4.8851 0.4836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126610711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:20 Heat of formation + Delta-G solvation = -115.759668 kcal Electronic energy + Delta-G solvation = -26078.564103 eV Core-core repulsion = 22051.261626 eV Total energy + Delta-G solvation = -4027.302476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92992 -39.06048 -37.12889 -36.96369 -35.57579 -35.49948 -34.86346 -32.28181 -32.05563 -31.34320 -30.09279 -27.46696 -25.46968 -23.58740 -22.97147 -22.10633 -21.43638 -20.29662 -19.37894 -18.45183 -17.91519 -17.52826 -17.02985 -16.99088 -16.19390 -15.90295 -15.64942 -15.20075 -14.98299 -14.53456 -14.41813 -14.30816 -13.81549 -13.61066 -13.49822 -13.32204 -13.02161 -12.89428 -12.55260 -12.44305 -12.12155 -12.08400 -11.84025 -11.75541 -11.66014 -11.47359 -11.10584 -10.96880 -10.94598 -10.78514 -10.63031 -10.05777 -9.90934 -9.69215 -9.59574 -9.30121 -8.98423 -8.60002 -6.24693 -4.26714 0.01508 0.71993 1.06499 1.65979 2.06221 2.26104 3.18795 3.22289 3.25205 3.27810 3.51728 4.00961 4.14883 4.25744 4.34628 4.39717 4.51001 4.58369 4.63651 4.72448 4.79406 4.94836 5.04604 5.08510 5.23294 5.26447 5.32638 5.39737 5.44996 5.69296 5.73824 5.84943 5.92682 6.01035 6.06579 6.10159 6.20876 6.47953 6.74321 6.82399 7.30982 7.34547 7.72198 8.30395 8.76789 9.32690 10.87611 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.002971 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.939914 B = 9422.787612 C =11218.209780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C -0.095 4.095 4 C 0.072 3.928 5 O -0.351 6.351 6 C 0.511 3.489 7 O -0.499 6.499 8 C -0.081 4.081 9 C -0.078 4.078 10 C -0.029 4.029 11 C -0.639 4.639 12 S 2.688 3.312 13 O -0.968 6.968 14 O -0.956 6.956 15 N -1.092 6.092 16 C 0.216 3.784 17 C -0.532 4.532 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.890 5.890 21 Si 0.871 3.129 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.263 1.263 25 C -0.031 4.031 26 C -0.084 4.084 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.418 0.582 37 H 0.020 0.980 38 H 0.033 0.967 39 H 0.268 0.732 40 H 0.152 0.848 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.152 -12.387 6.700 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.175 4.175 3 C -0.132 4.132 4 C -0.002 4.002 5 O -0.267 6.267 6 C 0.355 3.645 7 O -0.388 6.388 8 C -0.083 4.083 9 C -0.097 4.097 10 C -0.048 4.048 11 C -0.723 4.723 12 S 2.775 3.225 13 O -0.958 6.958 14 O -0.946 6.946 15 N -0.855 5.855 16 C 0.091 3.909 17 C -0.571 4.571 18 H 0.101 0.899 19 C -0.129 4.129 20 N -0.528 5.528 21 Si 0.698 3.302 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.187 1.187 25 C -0.050 4.050 26 C -0.103 4.103 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.254 0.746 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.169 0.831 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.472 -11.959 7.097 23.928 hybrid contribution -0.451 -1.273 -0.757 1.548 sum -19.923 -13.232 6.340 24.743 Atomic orbital electron populations 1.23944 0.95808 1.02288 0.99808 1.22733 0.96036 0.97753 1.01004 1.20712 0.97771 0.96578 0.98110 1.23063 0.93964 0.83307 0.99872 1.86524 1.49935 1.40782 1.49502 1.21158 0.77717 0.86942 0.78632 1.90843 1.64884 1.43972 1.39102 1.19373 0.98149 0.92354 0.98402 1.21358 0.93655 0.97775 0.96908 1.20918 0.96761 0.91025 0.96123 1.31649 1.13478 1.23543 1.03661 1.02072 0.73534 0.73927 0.73000 1.93559 1.81962 1.85799 1.34519 1.93583 1.71291 1.55108 1.74607 1.55225 1.21567 1.89613 1.19109 1.19503 1.00194 0.95770 0.75429 1.21017 0.93252 1.49443 0.93425 0.89863 1.24859 0.95918 0.94392 0.97718 1.69873 1.22142 1.48540 1.12208 0.86917 0.83144 0.79465 0.80721 1.19498 1.20782 1.18708 1.21049 0.91592 0.97160 0.95210 1.21584 0.98776 0.92326 0.97596 0.88055 0.88272 0.86878 0.90118 0.89467 0.90730 0.90823 0.83611 0.83045 0.74634 0.96219 0.94924 0.92218 0.83068 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 14.32 29.01 0.42 -0.55 16 2 C -0.16 -0.92 9.52 -36.03 -0.34 -1.26 16 3 C -0.09 -0.62 6.04 -27.88 -0.17 -0.79 16 4 C 0.07 0.60 5.46 37.16 0.20 0.80 16 5 O -0.35 -3.75 9.47 -40.54 -0.38 -4.13 16 6 C 0.51 6.35 7.90 34.61 0.27 6.62 16 7 O -0.50 -7.07 16.14 -19.24 -0.31 -7.38 16 8 C -0.08 -1.02 5.87 -104.98 -0.62 -1.63 16 9 C -0.08 -0.95 9.60 -39.17 -0.38 -1.33 16 10 C -0.03 -0.37 9.50 -39.64 -0.38 -0.75 16 11 C -0.64 -9.21 5.95 -39.49 -0.24 -9.44 16 12 S 2.69 44.32 5.74 -107.50 -0.62 43.70 16 13 O -0.97 -16.85 17.27 -57.17 -0.99 -17.83 16 14 O -0.96 -18.09 16.73 -57.17 -0.96 -19.04 16 15 N -1.09 -19.94 5.99 -11.65 -0.07 -20.01 16 16 C 0.22 4.70 5.05 -5.19 -0.03 4.67 16 17 C -0.53 -13.97 9.83 -34.44 -0.34 -14.31 16 18 H 0.08 2.32 7.90 -52.49 -0.41 1.91 16 19 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 21 Si 0.87 19.88 27.47 -169.99 -4.67 15.21 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 25 C -0.03 -0.42 9.50 -39.64 -0.38 -0.80 16 26 C -0.08 -1.01 9.62 -39.17 -0.38 -1.39 16 27 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 28 H 0.10 0.48 7.84 -52.49 -0.41 0.07 16 29 H 0.11 0.57 8.06 -52.48 -0.42 0.15 16 30 H 0.08 0.50 7.79 -51.93 -0.40 0.10 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.15 1.54 7.65 -52.48 -0.40 1.14 16 35 H 0.15 1.66 7.60 -52.49 -0.40 1.26 16 36 H 0.42 7.11 8.54 -34.47 -0.29 6.82 16 37 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 38 H 0.03 0.72 7.17 -51.93 -0.37 0.34 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.15 1.92 7.60 -52.49 -0.40 1.52 16 41 H 0.15 1.42 7.61 -52.49 -0.40 1.02 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -32.94 372.87 -9.19 -42.13 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.15 Total: 4.93 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -2.44 Total: -18.20 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.70 Total: -45.01 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -2.64 Total: -48.40 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.21 kcal Atomic # 16 Polarization: 44.32 SS G_CDS: -0.62 Total: 43.70 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.94 -9.19 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126610711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.628 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds