Wall clock time and date at job start Tue Mar 31 2020 23:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99955 * 2 1 4 4 C 1.53008 * 109.47269 * 124.99663 * 3 2 1 5 5 O 1.45195 * 109.47065 * 180.02562 * 4 3 2 6 6 C 1.34717 * 116.99524 * 180.02562 * 5 4 3 7 7 O 1.21462 * 120.00170 * 359.97438 * 6 5 4 8 8 C 1.47729 * 119.99714 * 180.02562 * 6 5 4 9 9 C 1.39622 * 120.15060 * 180.02562 * 8 6 5 10 10 C 1.37945 * 119.84969 * 180.02562 * 9 8 6 11 11 C 1.38365 * 120.15161 * 0.02562 * 10 9 8 12 12 S 1.76197 * 119.85065 * 179.97438 * 11 10 9 13 13 O 1.42100 * 106.39925 * 336.45651 * 12 11 10 14 14 O 1.42103 * 106.39966 * 203.53767 * 12 11 10 15 15 N 1.65597 * 107.21750 * 89.99747 * 12 11 10 16 16 C 1.46506 * 120.00079 * 65.00357 * 15 12 11 17 17 C 1.50699 * 109.47214 * 164.72113 * 16 15 12 18 18 H 1.07997 * 119.99775 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99982 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99946 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.46923 * 89.99901 * 21 19 17 23 23 H 1.48494 * 109.47285 * 209.99436 * 21 19 17 24 24 H 1.48494 * 109.47464 * 329.99875 * 21 19 17 25 25 C 1.38370 * 120.29814 * 0.23362 * 11 10 9 26 26 C 1.37943 * 120.15314 * 359.48790 * 25 11 10 27 27 H 1.08000 * 119.99573 * 179.97438 * 1 2 3 28 28 H 1.07993 * 119.99870 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.00012 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47296 * 4.99927 * 3 2 1 31 31 H 1.08998 * 109.47583 * 244.99691 * 3 2 1 32 32 H 1.09002 * 109.46746 * 59.99927 * 4 3 2 33 33 H 1.08998 * 109.46841 * 300.00482 * 4 3 2 34 34 H 1.08004 * 120.07280 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.92448 * 179.97438 * 10 9 8 36 36 H 0.97005 * 120.00050 * 244.72378 * 15 12 11 37 37 H 1.08999 * 109.46682 * 284.72550 * 16 15 12 38 38 H 1.09000 * 109.47243 * 44.71866 * 16 15 12 39 39 H 0.96999 * 119.99434 * 180.02562 * 20 19 17 40 40 H 1.07998 * 119.92018 * 179.72619 * 25 11 10 41 41 H 1.07998 * 120.07644 * 180.25923 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7605 2.5908 1.1820 6 6 4.6628 2.7760 2.1651 7 8 4.8383 1.9108 2.9993 8 6 5.4381 4.0320 2.2291 9 6 6.3744 4.2271 3.2462 10 6 7.0945 5.4024 3.3004 11 6 6.8902 6.3871 2.3500 12 16 7.8138 7.8856 2.4271 13 8 8.2265 8.0333 3.7788 14 8 7.0491 8.8642 1.7364 15 7 9.1929 7.6575 1.5393 16 6 9.1055 7.4386 0.0933 17 6 10.4649 7.6331 -0.5273 18 1 11.3094 7.8941 0.0932 19 6 10.6304 7.4778 -1.8873 20 7 11.8167 7.6480 -2.4290 21 14 9.1695 7.0271 -2.9605 22 1 8.5022 8.2665 -3.4341 23 1 9.6380 6.2398 -4.1291 24 1 8.2068 6.2172 -2.1717 25 6 5.9600 6.2024 1.3424 26 6 5.2371 5.0296 1.2730 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 1.8501 -0.9354 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 3.7400 0.5066 1.0922 33 1 2.4772 1.2356 2.1130 34 1 6.5340 3.4598 3.9894 35 1 7.8188 5.5548 4.0869 36 1 10.0590 7.6729 1.9760 37 1 8.7596 6.4233 -0.1001 38 1 8.4030 8.1505 -0.3401 39 1 11.9330 7.5391 -3.3858 40 1 5.8023 6.9768 0.6063 41 1 4.5144 4.8851 0.4836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126610711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:19 Heat of formation + Delta-G solvation = -137.649591 kcal Electronic energy + Delta-G solvation = -26079.513321 eV Core-core repulsion = 22051.261626 eV Total energy + Delta-G solvation = -4028.251694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84534 -40.01245 -38.36173 -37.97215 -36.97722 -36.53172 -36.04110 -34.22786 -33.03796 -32.31125 -30.67190 -29.32778 -26.38107 -24.36802 -24.03295 -23.77397 -22.34567 -20.79372 -20.67796 -19.55578 -19.26443 -18.73074 -18.09374 -17.85063 -17.78501 -17.31341 -16.52363 -16.19564 -15.99186 -15.83071 -15.32497 -15.21832 -15.06413 -14.78135 -14.72400 -14.48248 -14.24791 -14.07628 -13.83784 -13.71302 -13.25009 -13.16842 -13.11779 -12.73020 -12.71911 -12.44478 -12.43493 -12.22170 -12.05792 -11.84260 -11.74686 -11.64808 -11.60753 -10.87896 -10.71638 -10.33188 -10.30264 -10.24410 -8.30693 -6.37911 -1.01909 -0.58587 0.10646 1.08249 1.14234 1.41241 1.43073 1.51711 1.53868 2.03529 2.35809 2.37496 2.72745 3.04430 3.23622 3.33112 3.64633 3.72691 3.84319 3.95164 4.06239 4.08724 4.18457 4.31176 4.36387 4.39802 4.42674 4.72592 4.76842 4.77684 4.84530 4.90615 4.98847 5.03577 5.05109 5.08764 5.21749 5.42794 5.51541 5.69974 5.79665 6.18409 6.26231 6.43867 6.68937 7.25681 8.84846 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.002971 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.939914 B = 9422.787612 C =11218.209780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 C -0.088 4.088 4 C 0.067 3.933 5 O -0.349 6.349 6 C 0.515 3.485 7 O -0.521 6.521 8 C -0.086 4.086 9 C -0.078 4.078 10 C -0.032 4.032 11 C -0.647 4.647 12 S 2.708 3.292 13 O -0.979 6.979 14 O -0.981 6.981 15 N -1.098 6.098 16 C 0.221 3.779 17 C -0.541 4.541 18 H 0.049 0.951 19 C 0.014 3.986 20 N -0.941 5.941 21 Si 0.932 3.068 22 H -0.264 1.264 23 H -0.282 1.282 24 H -0.230 1.230 25 C -0.043 4.043 26 C -0.077 4.077 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.421 0.579 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.269 0.731 40 H 0.160 0.840 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.878 -13.879 6.473 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.187 4.187 3 C -0.125 4.125 4 C -0.006 4.006 5 O -0.265 6.265 6 C 0.360 3.640 7 O -0.411 6.411 8 C -0.087 4.087 9 C -0.096 4.096 10 C -0.051 4.051 11 C -0.735 4.735 12 S 2.799 3.201 13 O -0.969 6.969 14 O -0.972 6.972 15 N -0.860 5.860 16 C 0.095 3.905 17 C -0.580 4.580 18 H 0.067 0.933 19 C -0.186 4.186 20 N -0.580 5.580 21 Si 0.754 3.246 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.153 1.153 25 C -0.062 4.062 26 C -0.095 4.095 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.257 0.743 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.177 0.823 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -22.188 -13.416 6.888 26.828 hybrid contribution 0.367 -0.861 -0.593 1.108 sum -21.821 -14.276 6.295 26.826 Atomic orbital electron populations 1.24123 0.95757 1.03041 0.98737 1.22781 0.96300 0.97659 1.01939 1.20686 0.97407 0.97182 0.97262 1.23285 0.94106 0.82382 1.00836 1.86517 1.49475 1.41845 1.48652 1.21137 0.77713 0.86574 0.78567 1.90836 1.65648 1.44643 1.39992 1.19554 0.98068 0.92566 0.98524 1.21550 0.93201 0.97752 0.97140 1.21130 0.97087 0.90820 0.96095 1.31214 1.14256 1.22696 1.05302 1.01228 0.72691 0.74070 0.72139 1.93541 1.82226 1.86390 1.34761 1.93544 1.71500 1.57077 1.75032 1.55151 1.22733 1.90073 1.18015 1.19302 0.97481 0.96723 0.76954 1.21339 0.94543 1.48547 0.93543 0.93278 1.25825 0.98923 0.94393 0.99416 1.70027 1.24801 1.50522 1.12680 0.85940 0.79942 0.79845 0.78888 1.18847 1.20707 1.15289 1.21261 0.91683 0.98032 0.95231 1.21811 0.98556 0.91319 0.97844 0.87052 0.87878 0.86328 0.89733 0.89291 0.90675 0.90777 0.82179 0.81619 0.74346 0.94422 0.94517 0.92162 0.82293 0.81027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 14.32 67.78 0.97 -0.56 16 2 C -0.17 -1.64 9.52 25.64 0.24 -1.39 16 3 C -0.09 -0.97 6.04 29.85 0.18 -0.79 16 4 C 0.07 1.00 5.46 71.98 0.39 1.39 16 5 O -0.35 -6.61 9.47 -56.27 -0.53 -7.14 16 6 C 0.51 11.64 7.90 70.33 0.56 12.19 16 7 O -0.52 -13.83 16.14 19.96 0.32 -13.51 16 8 C -0.09 -1.92 5.87 -20.10 -0.12 -2.04 16 9 C -0.08 -1.71 9.60 22.53 0.22 -1.49 16 10 C -0.03 -0.76 9.50 22.23 0.21 -0.55 16 11 C -0.65 -17.33 5.95 22.33 0.13 -17.20 16 12 S 2.71 86.35 5.74 -56.49 -0.32 86.02 16 13 O -0.98 -33.15 17.27 -128.00 -2.21 -35.36 16 14 O -0.98 -36.10 16.73 -128.00 -2.14 -38.24 16 15 N -1.10 -39.47 5.99 -190.78 -1.14 -40.61 16 16 C 0.22 9.36 5.05 85.63 0.43 9.79 16 17 C -0.54 -28.70 9.83 25.60 0.25 -28.45 16 18 H 0.05 2.85 7.90 -2.91 -0.02 2.83 16 19 C 0.01 0.74 5.47 84.65 0.46 1.20 16 20 N -0.94 -55.77 13.96 21.45 0.30 -55.47 16 21 Si 0.93 39.83 27.47 68.60 1.88 41.71 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.23 -8.56 6.54 99.48 0.65 -7.91 16 25 C -0.04 -1.05 9.50 22.23 0.21 -0.84 16 26 C -0.08 -1.61 9.62 22.54 0.22 -1.39 16 27 H 0.11 0.71 8.06 -2.91 -0.02 0.68 16 28 H 0.10 0.78 7.84 -2.91 -0.02 0.75 16 29 H 0.12 0.99 8.06 -2.91 -0.02 0.97 16 30 H 0.08 0.86 7.79 -2.39 -0.02 0.84 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.16 3.02 7.65 -2.91 -0.02 3.00 16 35 H 0.17 3.32 7.60 -2.91 -0.02 3.29 16 36 H 0.42 14.44 8.54 -96.74 -0.83 13.62 16 37 H 0.04 1.48 7.20 -2.39 -0.02 1.46 16 38 H 0.04 1.54 7.17 -2.39 -0.02 1.53 16 39 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.16 3.60 7.60 -2.91 -0.02 3.57 16 41 H 0.17 2.67 7.61 -2.91 -0.02 2.65 16 Total: -1.00 -70.38 372.87 0.69 -69.69 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.18 Total: 23.03 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 4.36 Total: -30.11 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -0.84 Total: -96.08 kcal Atomic # 8 Polarization: -89.69 SS G_CDS: -4.56 Total: -94.26 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 1.88 Total: 41.71 kcal Atomic # 16 Polarization: 86.35 SS G_CDS: -0.32 Total: 86.02 kcal Total: -70.38 0.69 -69.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126610711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.963 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds