Wall clock time and date at job start Tue Mar 31 2020 22:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86804 * 119.99954 * 2 1 4 4 H 1.48499 * 109.46880 * 274.98809 * 3 2 1 5 5 H 1.48498 * 109.47149 * 34.98559 * 3 2 1 6 6 H 1.48499 * 109.47264 * 154.98930 * 3 2 1 7 7 C 1.39942 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99774 * 147.26810 * 7 2 1 9 9 C 1.41398 * 120.00067 * 327.27422 * 7 2 1 10 10 C 1.40713 * 120.24239 * 160.85337 * 9 7 2 11 11 C 1.37614 * 119.74266 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.25036 * 0.02729 * 11 10 9 13 13 S 1.76204 * 119.75132 * 179.97438 * 12 11 10 14 14 O 1.42103 * 106.40104 * 330.04764 * 13 12 11 15 15 O 1.42103 * 106.40129 * 197.13116 * 13 12 11 16 16 N 1.65599 * 107.22027 * 83.59008 * 13 12 11 17 17 C 1.46491 * 120.00117 * 63.29637 * 16 13 12 18 18 H 1.09003 * 109.47347 * 6.19964 * 17 16 13 19 19 C 1.53001 * 109.47324 * 126.19745 * 17 16 13 20 20 C 1.50696 * 109.47208 * 295.00395 * 19 17 16 21 21 O 1.20828 * 120.00087 * 359.97438 * 20 19 17 22 22 O 1.34228 * 120.00103 * 179.97438 * 20 19 17 23 23 C 1.52996 * 109.47381 * 246.20130 * 17 16 13 24 24 C 1.53001 * 117.50454 * 134.76866 * 23 17 16 25 25 C 1.52996 * 117.49901 * 66.10372 * 23 17 16 26 26 C 1.38638 * 120.50324 * 0.24857 * 12 11 10 27 27 C 1.37621 * 120.24116 * 359.44887 * 26 12 11 28 28 H 0.97006 * 119.99673 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.12882 * 0.02562 * 10 9 7 30 30 H 1.08006 * 119.87822 * 180.02562 * 11 10 9 31 31 H 0.96997 * 119.99630 * 243.30113 * 16 13 12 32 32 H 1.09006 * 109.46813 * 54.99920 * 19 17 16 33 33 H 1.08997 * 109.47474 * 174.99682 * 19 17 16 34 34 H 0.96705 * 116.99882 * 179.97438 * 22 20 19 35 35 H 1.09008 * 115.54775 * 280.43662 * 23 17 16 36 36 H 1.08996 * 117.49301 * 359.97438 * 24 23 17 37 37 H 1.08995 * 117.50092 * 145.02035 * 24 23 17 38 38 H 1.09009 * 117.50122 * 214.98125 * 25 23 17 39 39 H 1.09000 * 117.50214 * 359.97438 * 25 23 17 40 40 H 1.07994 * 119.88097 * 179.70439 * 26 12 11 41 41 H 1.08003 * 120.12384 * 180.27263 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3843 2.1073 -1.3948 5 1 1.4963 2.6200 0.8027 6 1 3.5885 1.4121 0.5919 7 6 2.0080 -1.2119 0.0005 8 1 2.9593 -1.2863 -0.5052 9 6 1.4693 -2.3390 0.6631 10 6 1.9283 -3.6317 0.3496 11 6 1.3966 -4.7214 1.0003 12 6 0.4120 -4.5493 1.9610 13 16 -0.2602 -5.9539 2.7857 14 8 -0.1832 -7.0342 1.8657 15 8 -1.4772 -5.5253 3.3810 16 7 0.7641 -6.3273 4.0322 17 6 0.9674 -5.3723 5.1243 18 1 0.2856 -4.5306 5.0026 19 6 0.6929 -6.0616 6.4623 20 6 -0.7611 -6.4504 6.5381 21 8 -1.5019 -6.2013 5.6167 22 8 -1.2332 -7.0735 7.6293 23 6 2.4112 -4.8669 5.0977 24 6 2.6365 -3.3628 5.2652 25 6 2.8414 -4.0203 3.8981 26 6 -0.0518 -3.2808 2.2739 27 6 0.4700 -2.1762 1.6402 28 1 -0.4850 0.8401 0.0004 29 1 2.6949 -3.7681 -0.3988 30 1 1.7476 -5.7146 0.7618 31 1 1.2295 -7.1783 4.0391 32 1 1.3125 -6.9546 6.5448 33 1 0.9294 -5.3787 7.2782 34 1 -2.1727 -7.3027 7.6319 35 1 3.1524 -5.5382 5.5317 36 1 1.7561 -2.7334 5.3939 37 1 3.5260 -3.0446 5.8089 38 1 3.8657 -4.1343 3.5430 39 1 2.0960 -3.8238 3.1275 40 1 -0.8225 -3.1587 3.0205 41 1 0.1103 -1.1885 1.8885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137204910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:52 Heat of formation + Delta-G solvation = -150.723314 kcal Electronic energy + Delta-G solvation = -28369.188292 eV Core-core repulsion = 24340.369678 eV Total energy + Delta-G solvation = -4028.818614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14707 -39.57989 -38.84723 -37.90646 -36.88593 -36.55016 -35.85286 -35.15542 -32.08848 -31.42786 -31.24577 -27.57381 -26.11960 -23.29454 -23.04242 -22.86899 -22.13557 -21.42752 -20.36103 -19.41011 -18.76102 -18.57945 -18.01523 -17.53478 -17.15035 -17.00198 -16.55681 -16.12150 -15.86497 -15.57643 -15.12886 -15.08838 -14.86906 -14.19307 -14.04564 -13.96706 -13.73080 -13.47321 -13.17927 -13.06171 -12.97405 -12.82471 -12.75454 -12.61789 -12.47325 -12.26380 -12.20391 -12.04736 -11.91527 -11.48390 -11.36118 -11.29533 -11.10836 -11.01372 -10.92200 -10.33105 -9.78360 -9.49994 -9.00113 -6.58007 -0.14951 0.57723 1.11917 1.33513 1.41670 1.47141 1.54051 2.09672 2.23529 2.30540 2.50297 3.09131 3.12947 3.56744 3.62590 3.83762 3.96679 4.13234 4.25195 4.32573 4.35727 4.36328 4.44296 4.56634 4.79145 4.84853 4.89083 4.96535 4.98083 5.07990 5.15090 5.26432 5.29769 5.40025 5.54638 5.64017 5.66667 5.81356 5.86233 5.94985 6.17253 6.31139 6.50132 6.70127 6.85757 7.20761 7.97983 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.003874 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.963096 B = 7225.158113 C = 7695.739431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.048 3.952 3 Si 0.980 3.020 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.252 1.252 7 C -0.468 4.468 8 H 0.093 0.907 9 C 0.119 3.881 10 C -0.257 4.257 11 C 0.010 3.990 12 C -0.798 4.798 13 S 2.710 3.290 14 O -1.020 7.020 15 O -0.978 6.978 16 N -1.099 6.099 17 C 0.194 3.806 18 H 0.072 0.928 19 C -0.110 4.110 20 C 0.452 3.548 21 O -0.518 6.518 22 O -0.519 6.519 23 C -0.148 4.148 24 C -0.169 4.169 25 C -0.216 4.216 26 C -0.009 4.009 27 C -0.213 4.213 28 H 0.301 0.699 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.422 0.578 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.421 0.579 35 H 0.142 0.858 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.221 -5.812 14.800 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.175 4.175 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.175 1.175 7 C -0.493 4.493 8 H 0.111 0.889 9 C 0.116 3.884 10 C -0.277 4.277 11 C -0.009 4.009 12 C -0.891 4.891 13 S 2.806 3.194 14 O -1.010 7.010 15 O -0.968 6.968 16 N -0.857 5.857 17 C 0.086 3.914 18 H 0.090 0.910 19 C -0.149 4.149 20 C 0.294 3.706 21 O -0.405 6.405 22 O -0.333 6.333 23 C -0.167 4.167 24 C -0.206 4.206 25 C -0.253 4.253 26 C -0.029 4.029 27 C -0.234 4.234 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.258 0.742 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.282 0.718 35 H 0.160 0.840 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.278 -5.837 14.316 16.336 hybrid contribution -0.117 0.849 -0.732 1.127 sum 5.161 -4.988 13.584 15.364 Atomic orbital electron populations 1.69929 1.09960 1.32491 1.27477 1.27013 0.95049 1.05345 0.90133 0.85224 0.79794 0.75168 0.79946 1.18147 1.18679 1.17493 1.20190 1.05713 0.94791 1.28591 0.88867 1.17977 0.88921 0.92610 0.88908 1.21074 1.07805 0.92461 1.06405 1.20268 0.91626 0.97670 0.91377 1.29452 1.21894 1.14722 1.22998 1.00733 0.73485 0.72963 0.72239 1.93435 1.87711 1.55545 1.64347 1.93555 1.43211 1.83137 1.76855 1.55314 1.65478 1.27998 1.36950 1.20143 0.95388 0.90591 0.85257 0.90950 1.21784 0.88515 1.05508 0.99078 1.24159 0.92868 0.74242 0.79293 1.91115 1.60163 1.50939 1.38299 1.84464 1.34835 1.71488 1.42548 1.22597 0.96401 0.94202 1.03531 1.23012 1.03674 0.94067 0.99883 1.23488 1.03475 1.05099 0.93214 1.20242 0.94865 0.91725 0.96115 1.21040 1.03806 0.96980 1.01534 0.88722 0.87571 0.86605 0.74208 0.83902 0.83569 0.71837 0.84016 0.89922 0.86668 0.89060 0.87830 0.87871 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.51 11.61 21.83 0.25 -37.25 16 2 C 0.05 2.19 4.81 85.26 0.41 2.60 16 3 Si 0.98 33.74 29.66 68.60 2.03 35.78 16 4 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 5 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 6 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 7 C -0.47 -22.97 8.96 23.46 0.21 -22.76 16 8 H 0.09 4.34 8.02 -2.91 -0.02 4.31 16 9 C 0.12 6.04 5.60 -21.29 -0.12 5.92 16 10 C -0.26 -12.10 9.69 22.73 0.22 -11.88 16 11 C 0.01 0.46 8.58 22.22 0.19 0.65 16 12 C -0.80 -35.14 4.17 22.46 0.09 -35.05 16 13 S 2.71 109.00 5.54 -56.49 -0.31 108.68 16 14 O -1.02 -45.65 17.44 -128.00 -2.23 -47.88 16 15 O -0.98 -45.10 13.49 -118.72 -1.60 -46.70 16 16 N -1.10 -30.92 4.66 -169.40 -0.79 -31.71 16 17 C 0.19 4.65 2.04 44.99 0.09 4.74 16 18 H 0.07 2.19 7.25 -2.39 -0.02 2.17 16 19 C -0.11 -1.77 5.49 29.85 0.16 -1.61 16 20 C 0.45 10.47 8.19 71.23 0.58 11.05 16 21 O -0.52 -17.82 12.87 29.49 0.38 -17.44 16 22 O -0.52 -8.78 13.42 -51.40 -0.69 -9.47 16 23 C -0.15 -3.06 5.30 -10.80 -0.06 -3.12 16 24 C -0.17 -3.89 10.18 30.62 0.31 -3.58 16 25 C -0.22 -6.29 10.22 30.62 0.31 -5.98 16 26 C -0.01 -0.45 8.48 22.22 0.19 -0.26 16 27 C -0.21 -10.76 8.65 22.73 0.20 -10.57 16 28 H 0.30 12.85 8.30 -92.70 -0.77 12.08 16 29 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.12 4.63 7.75 -2.91 -0.02 4.61 16 31 H 0.42 9.20 8.96 -96.75 -0.87 8.34 16 32 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.42 4.54 9.10 -74.05 -0.67 3.86 16 35 H 0.14 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 37 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 39 H 0.10 3.79 3.02 -2.39 -0.01 3.78 16 40 H 0.10 4.73 7.46 -2.91 -0.02 4.71 16 41 H 0.10 5.02 6.35 -2.91 -0.02 5.00 16 Total: -1.00 -73.81 353.48 -0.60 -74.41 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.44 Total: 41.41 kcal Atomic # 6 Polarization: -72.63 SS G_CDS: 2.80 Total: -69.83 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -0.54 Total: -68.96 kcal Atomic # 8 Polarization: -117.35 SS G_CDS: -4.14 Total: -121.49 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.78 kcal Atomic # 16 Polarization: 109.00 SS G_CDS: -0.31 Total: 108.68 kcal Total: -73.81 -0.60 -74.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137204910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.310 kcal (2) G-P(sol) polarization free energy of solvation -73.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds