Wall clock time and date at job start Tue Mar 31 2020 22:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48503 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47058 * 299.99749 * 3 2 1 6 6 H 1.48495 * 109.47023 * 60.00055 * 3 2 1 7 7 C 1.38698 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00001 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00286 * 0.02562 * 7 2 1 10 10 C 1.35514 * 116.99957 * 185.08494 * 9 7 2 11 11 C 1.38831 * 120.16676 * 354.40908 * 10 9 7 12 12 C 1.38025 * 120.07934 * 180.02562 * 11 10 9 13 13 C 1.38574 * 120.39769 * 359.96041 * 12 11 10 14 14 C 1.37832 * 120.32308 * 0.02562 * 13 12 11 15 15 C 1.39662 * 119.91964 * 0.02562 * 14 13 12 16 16 C 1.47540 * 120.19837 * 179.97438 * 15 14 13 17 17 O 1.21589 * 120.00212 * 179.97438 * 16 15 14 18 18 N 1.34778 * 119.99666 * 359.97438 * 16 15 14 19 19 S 1.65598 * 120.00092 * 184.87020 * 18 16 15 20 20 O 1.42093 * 104.28004 * 180.48407 * 19 18 16 21 21 O 1.42101 * 104.27463 * 308.34072 * 19 18 16 22 22 C 1.81402 * 104.44935 * 64.41041 * 19 18 16 23 23 C 1.54260 * 110.03160 * 178.51362 * 22 19 18 24 24 C 1.54969 * 104.15945 * 217.13906 * 23 22 19 25 25 C 1.54884 * 102.77822 * 37.88191 * 24 23 22 26 26 C 1.53873 * 110.03059 * 61.29317 * 22 19 18 27 27 H 0.96995 * 119.99561 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.95995 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.80342 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.84071 * 179.74481 * 13 12 11 31 31 H 1.08000 * 120.04023 * 179.97438 * 14 13 12 32 32 H 0.97004 * 120.00182 * 4.87239 * 18 16 15 33 33 H 1.09002 * 110.01335 * 299.90200 * 22 19 18 34 34 H 1.09001 * 110.48896 * 335.78152 * 23 22 19 35 35 H 1.08999 * 110.49135 * 98.42901 * 23 22 19 36 36 H 1.09000 * 110.71525 * 279.57132 * 24 23 22 37 37 H 1.09001 * 110.92501 * 156.29597 * 24 23 22 38 38 H 1.08993 * 110.49254 * 203.40692 * 25 24 23 39 39 H 1.09008 * 110.59910 * 80.82024 * 25 24 23 40 40 H 1.09001 * 110.02672 * 238.56939 * 26 22 19 41 41 H 1.09003 * 110.03205 * 359.95128 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5028 0.1081 11 6 3.4554 -3.4402 0.0953 12 6 4.2012 -4.5965 0.2044 13 6 3.5743 -5.8261 0.3282 14 6 2.1985 -5.9074 0.3430 15 6 1.4308 -4.7460 0.2324 16 6 -0.0424 -4.8259 0.2471 17 8 -0.7073 -3.8125 0.1510 18 7 -0.6511 -6.0224 0.3669 19 16 -2.3005 -6.1265 0.2624 20 8 -2.5767 -7.5085 0.4434 21 8 -2.7721 -5.1577 1.1889 22 6 -2.6793 -5.6189 -1.4375 23 6 -4.1988 -5.7052 -1.6886 24 6 -4.3136 -6.2037 -3.1514 25 6 -3.1496 -7.2198 -3.2593 26 6 -2.0122 -6.5811 -2.4359 27 1 -0.4849 0.8400 -0.0004 28 1 3.9513 -2.4855 -0.0002 29 1 5.2798 -4.5426 0.1936 30 1 4.1666 -6.7256 0.4088 31 1 1.7146 -6.8682 0.4393 32 1 -0.1231 -6.8227 0.5145 33 1 -2.3296 -4.6009 -1.6095 34 1 -4.6585 -6.4193 -1.0052 35 1 -4.6596 -4.7231 -1.5822 36 1 -4.1736 -5.3802 -3.8515 37 1 -5.2719 -6.6945 -3.3213 38 1 -2.8455 -7.3426 -4.2988 39 1 -3.4378 -8.1800 -2.8312 40 1 -1.3396 -6.0299 -3.0930 41 1 -1.4602 -7.3526 -1.8990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151218660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:04 Heat of formation + Delta-G solvation = -112.091488 kcal Electronic energy + Delta-G solvation = -27943.961644 eV Core-core repulsion = 23916.818232 eV Total energy + Delta-G solvation = -4027.143412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91843 -38.39762 -38.11265 -36.92642 -36.49175 -35.85955 -33.95987 -32.47231 -30.55796 -29.24441 -29.07607 -28.98876 -25.55047 -23.81978 -21.83979 -21.27523 -20.99861 -20.69392 -19.14079 -18.31750 -18.08443 -17.34799 -16.92905 -16.49977 -15.96378 -15.09816 -14.84133 -14.65571 -14.57698 -14.43026 -14.33444 -13.91964 -13.65873 -13.53140 -13.19795 -12.83846 -12.70300 -12.30852 -12.02543 -11.91057 -11.83641 -11.81113 -11.48827 -11.39906 -11.34157 -11.30300 -11.19289 -11.01812 -10.91676 -10.84030 -10.54972 -10.51931 -10.03653 -9.83052 -9.27188 -8.99478 -8.45555 -7.47019 -6.56725 -4.16617 0.24731 1.45784 2.19006 2.60001 3.05348 3.06841 3.12649 3.21554 3.76681 3.83847 4.03596 4.18300 4.43474 4.56300 4.67400 4.91454 4.97983 5.02411 5.07129 5.11502 5.24638 5.29796 5.34845 5.42464 5.47455 5.55252 5.59022 5.68433 5.82637 5.85985 5.88077 5.97078 5.99095 6.11926 6.42046 6.50469 6.73291 6.90671 6.99460 7.14799 7.24917 7.54801 7.81111 8.30532 8.82854 9.50739 10.56495 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.004146 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.735768 B = 6751.612303 C = 8032.703893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.403 4.403 8 H 0.097 0.903 9 O -0.122 6.122 10 C 0.190 3.810 11 C -0.234 4.234 12 C -0.045 4.045 13 C -0.229 4.229 14 C -0.032 4.032 15 C -0.237 4.237 16 C 0.569 3.431 17 O -0.460 6.460 18 N -1.059 6.059 19 S 2.596 3.404 20 O -0.957 6.957 21 O -0.928 6.928 22 C -0.587 4.587 23 C -0.102 4.102 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.100 4.100 27 H 0.274 0.726 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.424 0.576 33 H 0.154 0.846 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -12.950 -5.585 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.479 4.479 8 H 0.115 0.885 9 O -0.019 6.019 10 C 0.130 3.870 11 C -0.253 4.253 12 C -0.064 4.064 13 C -0.248 4.248 14 C -0.051 4.051 15 C -0.244 4.244 16 C 0.360 3.640 17 O -0.331 6.331 18 N -0.825 5.825 19 S 2.691 3.309 20 O -0.947 6.947 21 O -0.918 6.918 22 C -0.698 4.698 23 C -0.142 4.142 24 C -0.154 4.154 25 C -0.163 4.163 26 C -0.138 4.138 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.260 0.740 33 H 0.172 0.828 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.568 -12.144 -4.974 13.372 hybrid contribution 1.187 0.586 -0.399 1.383 sum -1.380 -11.559 -5.373 12.821 Atomic orbital electron populations 1.70124 1.06026 1.28020 1.41574 1.25437 0.95856 0.99116 0.95955 0.85622 0.79180 0.79993 0.78480 1.18879 1.19933 1.19870 1.21590 0.92048 0.80849 1.53392 0.88535 1.84130 1.33925 1.11195 1.72648 1.19228 0.89976 0.87149 0.90678 1.21177 0.93224 0.99492 1.11413 1.20955 0.98829 0.92253 0.94346 1.20487 0.93927 0.97297 1.13066 1.20783 0.94000 0.95495 0.94836 1.18595 0.90714 0.92567 1.22545 1.18226 0.89402 0.81217 0.75189 1.91103 1.65498 1.32234 1.44272 1.55004 1.29268 1.17044 1.81203 1.05717 0.73116 0.74396 0.77648 1.93589 1.82885 1.32539 1.85698 1.93659 1.78298 1.62185 1.57649 1.31014 1.05305 1.11980 1.21531 1.22142 0.90240 1.03008 0.98765 1.22468 0.98668 0.98897 0.95401 1.22393 0.94821 0.98825 1.00230 1.21876 0.98322 0.96450 0.97169 0.91618 0.84836 0.86927 0.86946 0.86746 0.73966 0.82816 0.91103 0.89226 0.90691 0.90775 0.90822 0.90793 0.89606 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.11 13.67 55.48 0.76 -23.35 16 2 C 0.05 1.21 5.49 -17.51 -0.10 1.11 16 3 Si 0.94 19.78 29.55 -169.99 -5.02 14.76 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.40 -10.89 9.49 30.90 0.29 -10.60 16 8 H 0.10 2.35 5.21 -52.49 -0.27 2.08 16 9 O -0.12 -3.40 7.84 -21.04 -0.16 -3.57 16 10 C 0.19 4.45 6.66 -38.60 -0.26 4.19 16 11 C -0.23 -4.69 9.16 -39.44 -0.36 -5.05 16 12 C -0.05 -0.74 10.03 -39.54 -0.40 -1.13 16 13 C -0.23 -3.44 10.03 -39.61 -0.40 -3.84 16 14 C -0.03 -0.51 9.53 -39.20 -0.37 -0.89 16 15 C -0.24 -4.82 5.89 -104.81 -0.62 -5.44 16 16 C 0.57 11.76 7.50 -12.47 -0.09 11.67 16 17 O -0.46 -11.71 13.40 -24.34 -0.33 -12.04 16 18 N -1.06 -16.90 5.49 30.46 0.17 -16.73 16 19 S 2.60 42.54 4.17 -107.50 -0.45 42.09 16 20 O -0.96 -15.50 17.78 -57.54 -1.02 -16.53 16 21 O -0.93 -19.70 16.96 -65.05 -1.10 -20.80 16 22 C -0.59 -8.15 3.33 -25.62 -0.09 -8.24 16 23 C -0.10 -1.21 6.38 -25.03 -0.16 -1.37 16 24 C -0.12 -1.11 6.91 -24.70 -0.17 -1.28 16 25 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16 26 C -0.10 -1.13 6.38 -25.61 -0.16 -1.30 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.11 1.34 6.41 -52.49 -0.34 1.00 16 32 H 0.42 5.11 6.84 -34.47 -0.24 4.87 16 33 H 0.15 2.40 7.38 -51.93 -0.38 2.01 16 34 H 0.07 0.77 7.81 -51.93 -0.41 0.37 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.72 7.40 -51.93 -0.38 0.33 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -36.12 353.74 -9.71 -45.83 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.83 Total: 8.52 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -3.05 Total: -23.52 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.93 Total: -40.09 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -2.62 Total: -52.93 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 42.54 SS G_CDS: -0.45 Total: 42.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.12 -9.71 -45.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151218660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.260 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds