Wall clock time and date at job start Tue Mar 31 2020 22:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48503 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47058 * 299.99749 * 3 2 1 6 6 H 1.48495 * 109.47023 * 60.00055 * 3 2 1 7 7 C 1.38698 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00001 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00286 * 0.02562 * 7 2 1 10 10 C 1.35514 * 116.99957 * 185.08494 * 9 7 2 11 11 C 1.38831 * 120.16676 * 354.40908 * 10 9 7 12 12 C 1.38025 * 120.07934 * 180.02562 * 11 10 9 13 13 C 1.38574 * 120.39769 * 359.96041 * 12 11 10 14 14 C 1.37832 * 120.32308 * 0.02562 * 13 12 11 15 15 C 1.39662 * 119.91964 * 0.02562 * 14 13 12 16 16 C 1.47540 * 120.19837 * 179.97438 * 15 14 13 17 17 O 1.21589 * 120.00212 * 179.97438 * 16 15 14 18 18 N 1.34778 * 119.99666 * 359.97438 * 16 15 14 19 19 S 1.65598 * 120.00092 * 184.87020 * 18 16 15 20 20 O 1.42093 * 104.28004 * 180.48407 * 19 18 16 21 21 O 1.42101 * 104.27463 * 308.34072 * 19 18 16 22 22 C 1.81402 * 104.44935 * 64.41041 * 19 18 16 23 23 C 1.54260 * 110.03160 * 178.51362 * 22 19 18 24 24 C 1.54969 * 104.15945 * 217.13906 * 23 22 19 25 25 C 1.54884 * 102.77822 * 37.88191 * 24 23 22 26 26 C 1.53873 * 110.03059 * 61.29317 * 22 19 18 27 27 H 0.96995 * 119.99561 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.95995 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.80342 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.84071 * 179.74481 * 13 12 11 31 31 H 1.08000 * 120.04023 * 179.97438 * 14 13 12 32 32 H 0.97004 * 120.00182 * 4.87239 * 18 16 15 33 33 H 1.09002 * 110.01335 * 299.90200 * 22 19 18 34 34 H 1.09001 * 110.48896 * 335.78152 * 23 22 19 35 35 H 1.08999 * 110.49135 * 98.42901 * 23 22 19 36 36 H 1.09000 * 110.71525 * 279.57132 * 24 23 22 37 37 H 1.09001 * 110.92501 * 156.29597 * 24 23 22 38 38 H 1.08993 * 110.49254 * 203.40692 * 25 24 23 39 39 H 1.09008 * 110.59910 * 80.82024 * 25 24 23 40 40 H 1.09001 * 110.02672 * 238.56939 * 26 22 19 41 41 H 1.09003 * 110.03205 * 359.95128 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5028 0.1081 11 6 3.4554 -3.4402 0.0953 12 6 4.2012 -4.5965 0.2044 13 6 3.5743 -5.8261 0.3282 14 6 2.1985 -5.9074 0.3430 15 6 1.4308 -4.7460 0.2324 16 6 -0.0424 -4.8259 0.2471 17 8 -0.7073 -3.8125 0.1510 18 7 -0.6511 -6.0224 0.3669 19 16 -2.3005 -6.1265 0.2624 20 8 -2.5767 -7.5085 0.4434 21 8 -2.7721 -5.1577 1.1889 22 6 -2.6793 -5.6189 -1.4375 23 6 -4.1988 -5.7052 -1.6886 24 6 -4.3136 -6.2037 -3.1514 25 6 -3.1496 -7.2198 -3.2593 26 6 -2.0122 -6.5811 -2.4359 27 1 -0.4849 0.8400 -0.0004 28 1 3.9513 -2.4855 -0.0002 29 1 5.2798 -4.5426 0.1936 30 1 4.1666 -6.7256 0.4088 31 1 1.7146 -6.8682 0.4393 32 1 -0.1231 -6.8227 0.5145 33 1 -2.3296 -4.6009 -1.6095 34 1 -4.6585 -6.4193 -1.0052 35 1 -4.6596 -4.7231 -1.5822 36 1 -4.1736 -5.3802 -3.8515 37 1 -5.2719 -6.6945 -3.3213 38 1 -2.8455 -7.3426 -4.2988 39 1 -3.4378 -8.1800 -2.8312 40 1 -1.3396 -6.0299 -3.0930 41 1 -1.4602 -7.3526 -1.8990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151218660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:03 Heat of formation + Delta-G solvation = -138.645158 kcal Electronic energy + Delta-G solvation = -27945.113098 eV Core-core repulsion = 23916.818232 eV Total energy + Delta-G solvation = -4028.294865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54590 -40.07287 -39.07460 -38.33736 -38.05550 -37.32794 -35.55056 -34.35157 -32.04056 -30.62210 -30.18621 -29.88363 -27.43722 -25.34890 -23.39407 -22.38615 -22.26422 -21.74217 -20.54707 -19.85003 -19.76084 -18.72428 -18.23256 -18.12861 -17.04942 -16.51177 -16.46977 -16.22090 -16.12775 -15.93136 -15.47353 -15.35620 -15.27095 -14.77583 -14.50268 -14.34337 -13.89585 -13.75722 -13.56088 -13.48864 -13.31687 -13.06545 -12.91698 -12.75753 -12.58416 -12.37683 -12.27359 -12.19965 -12.12531 -12.09875 -11.98714 -11.58396 -11.55281 -11.28616 -10.95644 -10.85957 -9.91736 -9.09456 -8.47250 -6.18024 -1.08275 -0.05367 0.70109 1.21356 1.33503 1.43553 1.52880 1.65889 2.14229 2.44274 2.82481 2.92212 3.11658 3.16371 3.33488 3.39403 3.57786 3.78106 3.97612 4.05014 4.13754 4.24408 4.27285 4.32633 4.36133 4.49028 4.59273 4.64660 4.67789 4.88604 4.91127 4.99441 5.04396 5.09936 5.10301 5.13740 5.37232 5.41014 5.53838 5.67758 5.77510 5.96105 6.13560 6.71166 6.92840 7.73774 8.72750 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.004146 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.735768 B = 6751.612303 C = 8032.703893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.020 4.020 3 Si 1.021 2.979 4 H -0.243 1.243 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.425 4.425 8 H 0.111 0.889 9 O -0.186 6.186 10 C 0.156 3.844 11 C -0.255 4.255 12 C -0.031 4.031 13 C -0.199 4.199 14 C -0.027 4.027 15 C -0.252 4.252 16 C 0.572 3.428 17 O -0.516 6.516 18 N -1.040 6.040 19 S 2.597 3.403 20 O -0.952 6.952 21 O -0.985 6.985 22 C -0.573 4.573 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.107 4.107 27 H 0.272 0.728 28 H 0.127 0.873 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.442 0.558 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -16.938 -6.592 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.166 1.166 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.501 4.501 8 H 0.128 0.872 9 O -0.088 6.088 10 C 0.100 3.900 11 C -0.274 4.274 12 C -0.049 4.049 13 C -0.217 4.217 14 C -0.045 4.045 15 C -0.259 4.259 16 C 0.364 3.636 17 O -0.390 6.390 18 N -0.807 5.807 19 S 2.696 3.304 20 O -0.942 6.942 21 O -0.975 6.975 22 C -0.687 4.687 23 C -0.155 4.155 24 C -0.151 4.151 25 C -0.160 4.160 26 C -0.145 4.145 27 H 0.081 0.919 28 H 0.144 0.856 29 H 0.174 0.826 30 H 0.185 0.815 31 H 0.182 0.818 32 H 0.283 0.717 33 H 0.147 0.853 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.244 -16.254 -5.939 17.307 hybrid contribution 0.500 1.288 -0.079 1.384 sum 0.743 -14.966 -6.019 16.148 Atomic orbital electron populations 1.70310 1.08351 1.28683 1.46411 1.26744 0.96701 1.03122 0.95440 0.84510 0.78568 0.74537 0.78408 1.16633 1.19354 1.19745 1.22092 0.92831 0.81497 1.53669 0.87167 1.84141 1.35417 1.12292 1.76955 1.20032 0.91779 0.87266 0.90908 1.21321 0.92123 1.01150 1.12843 1.21508 1.00915 0.91197 0.91299 1.21207 0.93765 0.98630 1.08075 1.21375 0.94668 0.95671 0.92777 1.19037 0.90902 0.93363 1.22613 1.18447 0.89796 0.81460 0.73900 1.91100 1.66691 1.34620 1.46614 1.54639 1.29379 1.16389 1.80323 1.05609 0.72702 0.73710 0.78406 1.93582 1.82593 1.31737 1.86293 1.93596 1.79185 1.63742 1.61001 1.30882 1.07388 1.11278 1.19192 1.22377 0.88507 1.03478 1.01123 1.22524 1.00212 0.99204 0.93187 1.22459 0.93576 0.98855 1.01133 1.22079 0.99299 0.96275 0.96895 0.91940 0.85578 0.82599 0.81549 0.81844 0.71733 0.85251 0.90026 0.89678 0.90655 0.88319 0.88723 0.89629 0.89396 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.58 13.67 21.62 0.30 -57.29 16 2 C -0.02 -1.16 5.49 84.85 0.47 -0.70 16 3 Si 1.02 42.93 29.55 68.60 2.03 44.96 16 4 H -0.24 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.43 -24.63 9.49 67.93 0.64 -23.98 16 8 H 0.11 5.67 5.21 -2.91 -0.02 5.66 16 9 O -0.19 -11.25 7.84 0.88 0.01 -11.24 16 10 C 0.16 7.54 6.66 22.91 0.15 7.69 16 11 C -0.26 -10.07 9.16 22.36 0.20 -9.87 16 12 C -0.03 -0.87 10.03 22.30 0.22 -0.64 16 13 C -0.20 -4.69 10.03 22.25 0.22 -4.47 16 14 C -0.03 -0.72 9.53 22.52 0.21 -0.51 16 15 C -0.25 -10.19 5.89 -19.99 -0.12 -10.31 16 16 C 0.57 24.47 7.50 86.70 0.65 25.12 16 17 O -0.52 -28.45 13.40 24.33 0.33 -28.12 16 18 N -1.04 -32.78 5.49 -175.81 -0.96 -33.74 16 19 S 2.60 86.48 4.17 -56.49 -0.24 86.24 16 20 O -0.95 -29.62 17.78 -127.65 -2.27 -31.89 16 21 O -0.98 -44.46 16.96 -120.47 -2.04 -46.51 16 22 C -0.57 -16.24 3.33 31.32 0.10 -16.13 16 23 C -0.12 -2.72 6.38 31.69 0.20 -2.52 16 24 C -0.11 -1.94 6.91 31.91 0.22 -1.72 16 25 C -0.12 -1.96 6.83 31.67 0.22 -1.74 16 26 C -0.11 -2.25 6.38 31.32 0.20 -2.05 16 27 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 28 H 0.13 5.06 5.64 -2.91 -0.02 5.04 16 29 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 30 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.16 2.79 6.41 -2.91 -0.02 2.77 16 32 H 0.44 9.51 6.84 -96.74 -0.66 8.85 16 33 H 0.13 4.41 7.38 -2.39 -0.02 4.39 16 34 H 0.08 1.73 7.81 -2.39 -0.02 1.71 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.09 1.52 7.40 -2.39 -0.02 1.50 16 Total: -1.00 -90.50 353.74 1.17 -89.34 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.42 Total: 30.08 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 3.60 Total: -41.84 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -0.67 Total: -91.03 kcal Atomic # 8 Polarization: -113.78 SS G_CDS: -3.98 Total: -117.76 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 86.48 SS G_CDS: -0.24 Total: 86.24 kcal Total: -90.50 1.17 -89.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151218660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.310 kcal (2) G-P(sol) polarization free energy of solvation -90.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds