Wall clock time and date at job start Tue Mar 31 2020 22:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99869 * 2 1 4 4 H 1.48500 * 109.47124 * 89.99902 * 3 2 1 5 5 H 1.48505 * 109.47187 * 210.00155 * 3 2 1 6 6 H 1.48502 * 109.47228 * 329.99914 * 3 2 1 7 7 C 1.38699 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99979 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99496 * 359.97438 * 7 2 1 10 10 C 1.35520 * 116.99368 * 174.94314 * 9 7 2 11 11 C 1.38834 * 120.16799 * 5.59521 * 10 9 7 12 12 C 1.38026 * 120.07544 * 179.72262 * 11 10 9 13 13 C 1.38578 * 120.39796 * 0.55759 * 12 11 10 14 14 C 1.37830 * 120.32545 * 359.71694 * 13 12 11 15 15 C 1.39664 * 119.91671 * 0.02562 * 14 13 12 16 16 C 1.47539 * 120.19359 * 180.02562 * 15 14 13 17 17 O 1.21595 * 119.99831 * 179.97438 * 16 15 14 18 18 N 1.34767 * 119.99999 * 359.97438 * 16 15 14 19 19 C 1.46499 * 120.00136 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47482 * 179.97438 * 19 18 16 21 21 H 1.09004 * 110.28120 * 59.29632 * 20 19 18 22 22 C 1.54163 * 110.31917 * 181.41054 * 20 19 18 23 23 C 1.53881 * 108.70111 * 146.81205 * 22 20 19 24 24 C 1.55047 * 106.62376 * 312.81941 * 23 22 20 25 25 S 1.82914 * 110.31854 * 297.18195 * 20 19 18 26 26 O 1.42103 * 109.35335 * 352.37164 * 25 20 19 27 27 O 1.42104 * 109.35272 * 125.57286 * 25 20 19 28 28 H 0.97002 * 119.99847 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.95827 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.79799 * 180.25759 * 12 11 10 31 31 H 1.08000 * 119.83235 * 179.74697 * 13 12 11 32 32 H 1.07994 * 120.03664 * 180.02562 * 14 13 12 33 33 H 0.97006 * 120.00145 * 359.97438 * 18 16 15 34 34 H 1.09002 * 109.47011 * 300.00006 * 19 18 16 35 35 H 1.08997 * 109.47319 * 59.99934 * 19 18 16 36 36 H 1.08998 * 109.64522 * 266.66494 * 22 20 19 37 37 H 1.09003 * 109.64763 * 27.09156 * 22 20 19 38 38 H 1.09000 * 110.02476 * 72.11117 * 23 22 20 39 39 H 1.09000 * 110.02156 * 193.48041 * 23 22 20 40 40 H 1.08997 * 110.78876 * 160.70813 * 24 23 22 41 41 H 1.09002 * 110.78755 * 283.97064 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4403 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0001 9 8 1.3346 -2.3686 -0.0005 10 6 2.0686 -3.5028 -0.1075 11 6 3.4555 -3.4401 -0.0941 12 6 4.2012 -4.5969 -0.1974 13 6 3.5744 -5.8261 -0.3267 14 6 2.1986 -5.9069 -0.3476 15 6 1.4309 -4.7453 -0.2386 16 6 -0.0422 -4.8248 -0.2598 17 8 -0.7071 -3.8112 -0.1642 18 7 -0.6508 -6.0207 -0.3850 19 6 -2.1135 -6.0996 -0.4066 20 6 -2.5434 -7.5602 -0.5573 21 1 -2.1567 -8.1552 0.2702 22 6 -4.0804 -7.6624 -0.6176 23 6 -4.4612 -8.8327 -1.5413 24 6 -3.6042 -8.6820 -2.8246 25 16 -1.9557 -8.2339 -2.1531 26 8 -1.3993 -7.1832 -2.9315 27 8 -1.2045 -9.4168 -1.9168 28 1 -0.4850 -0.8401 -0.0004 29 1 3.9513 -2.4854 0.0015 30 1 5.2798 -4.5434 -0.1822 31 1 4.1669 -6.7251 -0.4109 32 1 1.7150 -6.8672 -0.4481 33 1 -0.1203 -6.8292 -0.4616 34 1 -2.5128 -5.6971 0.5244 35 1 -2.4963 -5.5201 -1.2466 36 1 -4.4753 -7.8413 0.3824 37 1 -4.4941 -6.7352 -1.0144 38 1 -4.2385 -9.7814 -1.0529 39 1 -5.5210 -8.7814 -1.7911 40 1 -3.5558 -9.6242 -3.3703 41 1 -3.9961 -7.8881 -3.4605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153271757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:45 Heat of formation + Delta-G solvation = -105.852437 kcal Electronic energy + Delta-G solvation = -27403.493292 eV Core-core repulsion = 23376.620426 eV Total energy + Delta-G solvation = -4026.872866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.73836 -38.41170 -37.27241 -37.12232 -36.43411 -36.21959 -34.42051 -32.28176 -31.40921 -30.00872 -28.90341 -26.74101 -24.93007 -24.01571 -22.62353 -21.96389 -21.38832 -19.94818 -19.00499 -18.39632 -17.78387 -17.50436 -16.76461 -16.06608 -15.94168 -15.63036 -14.99392 -14.84401 -14.51951 -14.32008 -14.27862 -14.15450 -13.83952 -13.70490 -13.58834 -13.02182 -12.88083 -12.63584 -12.36965 -12.30798 -12.25778 -12.19856 -12.06658 -11.45839 -11.40448 -11.29694 -10.92925 -10.87099 -10.80559 -10.50900 -10.46122 -10.29772 -9.58887 -9.03488 -8.80061 -8.78348 -8.31549 -7.35895 -6.76927 -4.04213 -0.28644 1.65378 2.19939 2.29082 3.15647 3.24498 3.31694 3.42664 3.44753 3.62668 3.65653 3.95831 4.10966 4.11495 4.24618 4.30476 4.51737 4.61172 4.77943 4.99256 5.00797 5.09357 5.20151 5.27892 5.34901 5.38077 5.47700 5.48553 5.57842 5.65669 5.78098 6.01760 6.09797 6.50392 6.59870 6.68240 6.89973 7.05163 7.21019 7.47333 7.62758 7.85465 8.42039 8.86076 8.94602 9.60819 10.68322 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003212 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.957698 B = 8715.047064 C = 9965.986598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.014 3.986 3 Si 1.099 2.901 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.481 4.481 8 H 0.087 0.913 9 O -0.149 6.149 10 C 0.194 3.806 11 C -0.234 4.234 12 C -0.049 4.049 13 C -0.227 4.227 14 C -0.038 4.038 15 C -0.231 4.231 16 C 0.568 3.432 17 O -0.511 6.511 18 N -0.749 5.749 19 C 0.150 3.850 20 C -0.570 4.570 21 H 0.148 0.852 22 C -0.109 4.109 23 C -0.120 4.120 24 C -0.592 4.592 25 S 2.372 3.628 26 O -0.912 6.912 27 O -0.935 6.935 28 H 0.296 0.704 29 H 0.134 0.866 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.388 0.612 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 -18.651 -2.013 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.195 4.195 3 Si 0.923 3.077 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.104 0.896 9 O -0.048 6.048 10 C 0.135 3.865 11 C -0.253 4.253 12 C -0.068 4.068 13 C -0.246 4.246 14 C -0.057 4.057 15 C -0.236 4.236 16 C 0.359 3.641 17 O -0.386 6.386 18 N -0.405 5.405 19 C 0.025 3.975 20 C -0.679 4.679 21 H 0.166 0.834 22 C -0.148 4.148 23 C -0.159 4.159 24 C -0.721 4.721 25 S 2.553 3.447 26 O -0.909 6.909 27 O -0.933 6.933 28 H 0.107 0.893 29 H 0.151 0.849 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.222 0.778 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.154 0.846 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.281 -16.190 -2.295 17.899 hybrid contribution -0.111 -2.303 0.282 2.323 sum -7.392 -18.493 -2.013 20.017 Atomic orbital electron populations 1.70405 1.06684 1.33172 1.38998 1.26610 0.96838 1.01139 0.94866 0.83067 0.74218 0.73012 0.77409 1.20638 1.20717 1.19964 1.22457 0.93258 0.82499 1.57385 0.89587 1.83846 1.34825 1.11768 1.74323 1.19074 0.89846 0.86641 0.90909 1.21172 0.93262 0.99426 1.11418 1.20923 0.98751 0.92214 0.94890 1.20490 0.93963 0.97298 1.12895 1.20761 0.94039 0.95436 0.95433 1.18774 0.91610 0.92329 1.20901 1.18099 0.87835 0.82267 0.75934 1.90859 1.65997 1.33897 1.47811 1.45908 1.05880 1.09682 1.79061 1.20840 0.81751 0.90262 1.04603 1.30613 1.06940 1.07827 1.22538 0.83383 1.21970 0.89961 1.00171 1.02650 1.22224 1.02250 0.99559 0.91839 1.30700 1.21586 1.12401 1.07418 1.09862 0.79022 0.76347 0.79458 1.93703 1.75182 1.55573 1.66469 1.93629 1.67444 1.47157 1.85024 0.89265 0.84885 0.86964 0.87007 0.87179 0.77847 0.89485 0.89737 0.88391 0.88978 0.89470 0.88211 0.84624 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.79 13.70 55.48 0.76 -26.03 16 2 C 0.01 0.41 5.49 -17.52 -0.10 0.32 16 3 Si 1.10 24.08 29.92 -169.99 -5.09 18.99 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.48 -13.90 9.49 30.90 0.29 -13.61 16 8 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 9 O -0.15 -4.41 7.24 -21.06 -0.15 -4.57 16 10 C 0.19 4.97 6.66 -38.60 -0.26 4.71 16 11 C -0.23 -5.21 9.16 -39.44 -0.36 -5.57 16 12 C -0.05 -0.90 10.03 -39.53 -0.40 -1.30 16 13 C -0.23 -3.95 10.03 -39.61 -0.40 -4.34 16 14 C -0.04 -0.70 9.53 -39.20 -0.37 -1.07 16 15 C -0.23 -5.24 5.89 -104.81 -0.62 -5.86 16 16 C 0.57 12.72 7.76 -12.47 -0.10 12.62 16 17 O -0.51 -13.65 15.17 -16.57 -0.25 -13.90 16 18 N -0.75 -12.44 4.85 -61.35 -0.30 -12.74 16 19 C 0.15 1.97 4.57 -4.04 -0.02 1.95 16 20 C -0.57 -4.74 3.30 -26.12 -0.09 -4.82 16 21 H 0.15 0.97 8.14 -51.93 -0.42 0.55 16 22 C -0.11 -0.58 5.94 -25.66 -0.15 -0.73 16 23 C -0.12 -0.50 6.48 -25.19 -0.16 -0.67 16 24 C -0.59 -3.38 7.32 38.24 0.28 -3.10 16 25 S 2.37 23.64 5.48 -107.50 -0.59 23.05 16 26 O -0.91 -13.35 16.78 -57.71 -0.97 -14.32 16 27 O -0.94 -11.73 18.15 -57.71 -1.05 -12.78 16 28 H 0.30 9.73 7.97 -40.82 -0.33 9.40 16 29 H 0.13 2.94 5.64 -52.48 -0.30 2.64 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.11 1.64 6.40 -52.49 -0.34 1.30 16 33 H 0.39 5.47 6.18 -40.82 -0.25 5.22 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.18 7.98 -51.93 -0.41 0.76 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.46 7.85 -51.93 -0.41 0.06 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -39.94 354.58 -9.64 -49.58 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -4.91 Total: 8.84 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.44 Total: -21.47 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.46 Total: -38.77 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -2.42 Total: -45.56 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.09 Total: 18.99 kcal Atomic # 16 Polarization: 23.64 SS G_CDS: -0.59 Total: 23.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -39.94 -9.64 -49.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153271757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.277 kcal (2) G-P(sol) polarization free energy of solvation -39.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds