Wall clock time and date at job start Tue Mar 31 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99778 * 2 1 4 4 H 1.48503 * 109.46888 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47027 * 299.99627 * 3 2 1 6 6 H 1.48503 * 109.46935 * 59.99862 * 3 2 1 7 7 C 1.37868 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00639 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46836 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.46820 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54130 * 68.37459 * 11 10 9 13 13 O 1.42097 * 110.54536 * 291.62445 * 11 10 9 14 14 C 1.76195 * 104.45040 * 179.97438 * 11 10 9 15 15 C 1.38367 * 119.85389 * 89.99838 * 14 11 10 16 16 C 1.37961 * 120.14417 * 180.25608 * 15 14 11 17 17 C 1.39576 * 119.85218 * 359.51840 * 16 15 14 18 18 C 1.47840 * 120.14237 * 180.25283 * 17 16 15 19 19 O 1.21558 * 120.00477 * 6.92520 * 18 17 16 20 20 N 1.34780 * 120.00064 * 186.92414 * 18 17 16 21 21 C 1.47060 * 136.05759 * 5.22890 * 20 18 17 22 22 C 1.53750 * 87.88952 * 152.96327 * 21 20 18 23 23 O 1.42897 * 114.39485 * 272.67508 * 22 21 20 24 24 C 1.47062 * 136.05800 * 185.59947 * 20 18 17 25 25 C 1.39579 * 119.71230 * 0.46187 * 17 16 15 26 26 C 1.37954 * 119.85347 * 359.76640 * 25 17 16 27 27 H 0.97009 * 119.99927 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47601 * 59.99879 * 9 7 2 29 29 H 1.09002 * 109.47047 * 299.99462 * 9 7 2 30 30 H 1.08998 * 109.46797 * 59.99922 * 10 9 7 31 31 H 1.08992 * 109.46760 * 299.99693 * 10 9 7 32 32 H 1.07997 * 119.92595 * 359.97438 * 15 14 11 33 33 H 1.08003 * 120.06894 * 179.74993 * 16 15 14 34 34 H 1.09011 * 113.46865 * 267.69567 * 21 20 18 35 35 H 1.08997 * 113.46710 * 38.13036 * 21 20 18 36 36 H 1.09009 * 114.26808 * 139.79105 * 22 21 20 37 37 H 0.96699 * 113.99863 * 273.58630 * 23 22 21 38 38 H 1.09000 * 113.47099 * 321.86803 * 24 20 18 39 39 H 1.09006 * 113.46823 * 92.24187 * 24 20 18 40 40 H 1.07998 * 120.07393 * 179.79517 * 25 17 16 41 41 H 1.07997 * 119.92801 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 16 1.3384 -5.2329 0.0026 12 8 0.6649 -5.4205 -1.2346 13 8 0.6638 -5.4187 1.2394 14 6 2.5961 -6.4668 0.0033 15 6 3.0878 -6.9485 1.2036 16 6 4.0763 -7.9108 1.2111 17 6 4.5734 -8.4057 0.0044 18 6 5.6288 -9.4410 0.0050 19 8 5.9767 -9.9538 1.0508 20 7 6.2052 -9.8164 -1.1540 21 6 6.1360 -9.3871 -2.5588 22 6 7.5695 -9.9156 -2.7316 23 8 8.5903 -8.9700 -2.4066 24 6 7.1753 -10.8399 -1.5714 25 6 4.0728 -7.9158 -1.2029 26 6 3.0876 -6.9501 -1.1964 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8713 -3.6038 0.8923 31 1 2.8726 -3.6046 -0.8877 32 1 2.7000 -6.5671 2.1366 33 1 4.4621 -8.2830 2.1488 34 1 5.3978 -9.9351 -3.1444 35 1 6.0526 -8.3070 -2.6790 36 1 7.7457 -10.4326 -3.6750 37 1 8.8363 -8.3892 -3.1396 38 1 7.9773 -10.9977 -0.8503 39 1 6.7111 -11.7714 -1.8956 40 1 4.4555 -8.2922 -2.1400 41 1 2.6998 -6.5699 -2.1299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156552358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:28 Heat of formation + Delta-G solvation = -76.632090 kcal Electronic energy + Delta-G solvation = -26288.912912 eV Core-core repulsion = 22263.307135 eV Total energy + Delta-G solvation = -4025.605777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20104 -39.42517 -38.06347 -36.67883 -35.80853 -35.51290 -33.95527 -32.13357 -31.33465 -31.22111 -29.43475 -26.81821 -25.69555 -24.59118 -22.93430 -22.20447 -21.53702 -20.04230 -18.82538 -18.38495 -17.69719 -17.60183 -16.81904 -16.43184 -16.03856 -15.71113 -15.36462 -15.06688 -14.92647 -14.73182 -14.57575 -14.17138 -13.97376 -13.78296 -13.58193 -13.47330 -13.03017 -12.93566 -12.53944 -12.47402 -11.81710 -11.66121 -11.64260 -11.52963 -11.43109 -11.12715 -11.01137 -10.80837 -10.73291 -10.44783 -10.41496 -10.14469 -9.82331 -9.59023 -9.30827 -9.23794 -9.14025 -8.54330 -6.16356 -4.22274 0.13725 0.54373 1.06331 2.23425 2.38278 3.23430 3.23593 3.28403 3.31057 3.34253 3.42360 3.62621 3.94108 4.23651 4.28590 4.35681 4.44572 4.58819 4.61849 4.65345 4.74021 4.82096 5.04406 5.05253 5.12761 5.16454 5.19348 5.25593 5.36752 5.59344 5.63029 5.70077 5.79179 5.92090 5.99015 6.38797 6.51730 7.00199 7.16529 7.24952 7.30111 7.70884 7.76774 8.11739 8.81414 9.42936 10.94568 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.002519 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.193794 B =11112.831759 C =12021.036816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.562 4.562 11 S 2.471 3.529 12 O -0.943 6.943 13 O -0.942 6.942 14 C -0.631 4.631 15 C -0.031 4.031 16 C -0.082 4.082 17 C -0.088 4.088 18 C 0.589 3.411 19 O -0.528 6.528 20 N -0.637 5.637 21 C 0.056 3.944 22 C 0.067 3.933 23 O -0.540 6.540 24 C 0.109 3.891 25 C -0.121 4.121 26 C -0.033 4.033 27 H 0.265 0.735 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.387 0.613 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.141 0.859 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.511 -20.491 -8.465 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.696 4.696 11 S 2.653 3.347 12 O -0.941 6.941 13 O -0.939 6.939 14 C -0.715 4.715 15 C -0.049 4.049 16 C -0.102 4.102 17 C -0.091 4.091 18 C 0.380 3.620 19 O -0.405 6.405 20 N -0.373 5.373 21 C -0.068 4.068 22 C 0.007 3.993 23 O -0.345 6.345 24 C -0.014 4.014 25 C -0.140 4.140 26 C -0.052 4.052 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.236 0.764 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.158 0.842 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.539 -21.134 -7.093 26.081 hybrid contribution 1.241 1.072 -0.592 1.744 sum 14.780 -20.061 -7.684 26.076 Atomic orbital electron populations 1.69963 1.06110 1.27175 1.49483 1.25062 0.94979 0.99557 0.94837 0.86409 0.79944 0.83112 0.77799 1.19607 1.20778 1.20765 1.21023 0.93159 0.89564 1.52286 0.91859 1.19052 0.92735 0.90276 0.99262 1.30194 1.13363 1.15304 1.10715 1.06523 0.76068 0.77346 0.74805 1.93526 1.70683 1.85474 1.44379 1.93534 1.70595 1.85438 1.44347 1.31356 1.20914 1.20178 0.99029 1.21044 0.92767 0.93678 0.97439 1.21394 0.95467 0.95491 0.97825 1.20073 0.96926 0.97127 0.94947 1.17821 0.80505 0.82025 0.81653 1.90798 1.63004 1.56575 1.30160 1.49252 1.45005 1.36333 1.06682 1.24105 0.98297 1.02703 0.81651 1.23098 0.86936 0.91358 0.97924 1.86543 1.55543 1.50358 1.42082 1.23106 0.91252 0.92087 0.94905 1.21814 0.97174 0.97286 0.97717 1.20974 0.92942 0.93889 0.97351 0.92516 0.94522 0.94513 0.85634 0.85694 0.83081 0.83801 0.88091 0.88824 0.88546 0.76433 0.89272 0.87922 0.84177 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.94 9.11 -34.44 -0.31 -14.25 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.03 0.62 4.98 -27.88 -0.14 0.48 16 10 C -0.56 -10.11 5.92 37.16 0.22 -9.89 16 11 S 2.47 42.39 5.15 -107.50 -0.55 41.84 16 12 O -0.94 -18.28 17.11 -57.54 -0.98 -19.27 16 13 O -0.94 -18.64 17.11 -57.54 -0.98 -19.63 16 14 C -0.63 -8.94 5.66 -39.49 -0.22 -9.16 16 15 C -0.03 -0.41 9.45 -39.64 -0.37 -0.79 16 16 C -0.08 -1.07 9.59 -39.18 -0.38 -1.44 16 17 C -0.09 -1.10 5.87 -104.97 -0.62 -1.72 16 18 C 0.59 7.68 8.01 -12.33 -0.10 7.58 16 19 O -0.53 -8.62 17.15 5.31 0.09 -8.53 16 20 N -0.64 -5.94 3.67 -186.26 -0.68 -6.63 16 21 C 0.06 0.27 5.99 -8.39 -0.05 0.22 16 22 C 0.07 0.27 5.58 -26.09 -0.15 0.13 16 23 O -0.54 -3.26 13.72 -35.23 -0.48 -3.75 16 24 C 0.11 0.70 8.45 -8.53 -0.07 0.62 16 25 C -0.12 -1.30 9.14 -39.19 -0.36 -1.66 16 26 C -0.03 -0.41 9.45 -39.64 -0.37 -0.78 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.13 2.00 8.14 -51.92 -0.42 1.58 16 31 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 32 H 0.15 1.83 7.56 -52.49 -0.40 1.43 16 33 H 0.14 1.73 7.67 -52.48 -0.40 1.33 16 34 H 0.10 0.25 8.14 -51.92 -0.42 -0.17 16 35 H 0.09 0.45 6.74 -51.93 -0.35 0.10 16 36 H 0.10 0.07 8.14 -51.92 -0.42 -0.35 16 37 H 0.39 0.53 9.12 45.56 0.42 0.95 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.14 1.03 4.19 -52.49 -0.22 0.81 16 41 H 0.15 1.58 7.56 -52.49 -0.40 1.19 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -39.31 364.74 -9.68 -48.99 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.27 Total: 0.01 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -3.02 Total: -29.13 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.05 Total: -31.75 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -2.36 Total: -51.18 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 42.39 SS G_CDS: -0.55 Total: 41.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.31 -9.68 -48.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156552358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.640 kcal (2) G-P(sol) polarization free energy of solvation -39.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds