Wall clock time and date at job start Tue Mar 31 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48503 * 109.46858 * 274.97961 * 3 2 1 5 5 H 1.48496 * 109.47213 * 34.98388 * 3 2 1 6 6 H 1.48504 * 109.47068 * 154.98206 * 3 2 1 7 7 C 1.39944 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99638 * 163.71202 * 7 2 1 9 9 C 1.41400 * 119.99986 * 343.71409 * 7 2 1 10 10 C 1.40716 * 120.24085 * 336.57091 * 9 7 2 11 11 C 1.37617 * 119.73944 * 180.23076 * 10 9 7 12 12 C 1.38636 * 120.24975 * 359.51875 * 11 10 9 13 13 S 1.76205 * 119.75197 * 180.27554 * 12 11 10 14 14 O 1.42094 * 106.40211 * 203.54275 * 13 12 11 15 15 O 1.42100 * 106.40061 * 336.46301 * 13 12 11 16 16 N 1.65600 * 107.21608 * 89.99994 * 13 12 11 17 17 C 1.46504 * 119.99861 * 65.00260 * 16 13 12 18 18 C 1.53000 * 109.46762 * 163.59930 * 17 16 13 19 19 C 1.50707 * 112.84942 * 293.51468 * 18 17 16 20 20 O 1.20821 * 119.99768 * 116.30282 * 19 18 17 21 21 O 1.34228 * 120.00005 * 296.30236 * 19 18 17 22 22 C 1.53780 * 113.61519 * 162.21187 * 18 17 16 23 23 C 1.53775 * 87.08128 * 220.01634 * 22 18 17 24 24 C 1.53775 * 87.08267 * 25.43085 * 23 22 18 25 25 C 1.38636 * 120.49952 * 0.25699 * 12 11 10 26 26 C 1.37616 * 120.25218 * 359.97438 * 25 12 11 27 27 H 0.97004 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.13428 * 0.02949 * 10 9 7 29 29 H 1.07994 * 119.88078 * 179.79330 * 11 10 9 30 30 H 0.97000 * 119.99712 * 245.00078 * 16 13 12 31 31 H 1.09001 * 109.47148 * 283.59441 * 17 16 13 32 32 H 1.08998 * 109.47103 * 43.59943 * 17 16 13 33 33 H 0.96696 * 117.00571 * 179.97438 * 21 19 18 34 34 H 1.09006 * 113.61440 * 334.56528 * 22 18 17 35 35 H 1.08997 * 113.62054 * 105.46380 * 22 18 17 36 36 H 1.09000 * 113.61488 * 270.88060 * 23 22 18 37 37 H 1.09008 * 113.61650 * 139.97877 * 23 22 18 38 38 H 1.09002 * 113.61209 * 220.01942 * 24 23 22 39 39 H 1.09001 * 113.61785 * 89.11526 * 24 23 22 40 40 H 1.08008 * 119.87605 * 179.97438 * 25 12 11 41 41 H 1.07993 * 120.12897 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3844 2.1072 -1.3948 5 1 1.4962 2.6200 0.8027 6 1 3.5884 1.4122 0.5921 7 6 2.0080 -1.2119 0.0005 8 1 3.0554 -1.2307 -0.2618 9 6 1.3435 -2.4118 0.3445 10 6 0.1813 -2.3762 1.1370 11 6 -0.4544 -3.5506 1.4695 12 6 0.0404 -4.7646 1.0186 13 16 -0.7881 -6.2597 1.4462 14 8 0.1793 -7.2961 1.3503 15 8 -1.5202 -5.9873 2.6333 16 7 -1.9086 -6.5548 0.2632 17 6 -1.4709 -6.8408 -1.1054 18 6 -2.6258 -7.4668 -1.8898 19 6 -3.0099 -8.8309 -1.3772 20 8 -4.1079 -9.0123 -0.9068 21 8 -2.1322 -9.8443 -1.4431 22 6 -2.4364 -7.4107 -3.4149 23 6 -3.9358 -7.0827 -3.5100 24 6 -3.8233 -6.5216 -2.0827 25 6 1.1821 -4.8111 0.2334 26 6 1.8368 -3.6497 -0.1076 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2085 -1.4313 1.4856 29 1 -1.3447 -3.5262 2.0804 30 1 -2.8548 -6.5383 0.4764 31 1 -1.1631 -5.9140 -1.5896 32 1 -0.6304 -7.5343 -1.0806 33 1 -2.4237 -10.7006 -1.1015 34 1 -1.7898 -6.5976 -3.7450 35 1 -2.1705 -8.3705 -3.8575 36 1 -4.5719 -7.9648 -3.5836 37 1 -4.1707 -6.3265 -4.2592 38 1 -4.6771 -6.7637 -1.4499 39 1 -3.5559 -5.4654 -2.0485 40 1 1.5590 -5.7625 -0.1121 41 1 2.7257 -3.6882 -0.7197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166674248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:59 Heat of formation + Delta-G solvation = -138.367935 kcal Electronic energy + Delta-G solvation = -27446.233026 eV Core-core repulsion = 23417.950182 eV Total energy + Delta-G solvation = -4028.282844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15243 -38.42041 -37.60226 -36.51221 -36.18102 -35.14823 -34.46972 -34.07028 -30.28017 -29.48570 -28.37820 -25.91891 -25.84619 -24.46801 -22.30966 -21.51876 -21.17305 -19.54030 -18.90194 -18.00051 -17.66271 -17.29596 -16.83367 -16.47761 -15.98288 -15.61446 -15.40791 -14.76208 -14.60021 -14.17583 -14.07524 -13.71610 -13.40951 -13.24556 -12.86458 -12.65734 -12.45623 -12.31747 -12.19380 -11.83381 -11.68663 -11.55868 -11.46104 -11.38144 -11.30710 -11.22732 -11.20711 -10.92959 -10.59501 -10.56286 -10.49596 -10.43450 -9.81064 -9.68586 -9.53205 -9.11606 -7.99136 -7.72765 -7.15874 -4.83771 1.22285 2.03496 2.22330 2.81266 2.85184 2.87202 2.90489 2.93958 3.62918 3.64076 4.11700 4.21868 4.30246 4.46108 4.54907 4.56020 4.99687 5.11180 5.23780 5.36090 5.44331 5.51456 5.54607 5.68055 5.70298 5.81740 5.88627 6.02808 6.03967 6.12085 6.13128 6.35197 6.65171 6.67825 6.90399 7.01729 7.22847 7.31388 7.40055 7.62527 7.75073 7.75531 7.93882 8.29841 8.48790 8.62633 9.73760 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.003264 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.673998 B = 8577.069542 C = 9430.252998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.433 4.433 8 H 0.087 0.913 9 C 0.138 3.862 10 C -0.184 4.184 11 C -0.015 4.015 12 C -0.787 4.787 13 S 2.692 3.308 14 O -0.984 6.984 15 O -0.983 6.983 16 N -1.129 6.129 17 C 0.141 3.859 18 C -0.092 4.092 19 C 0.508 3.492 20 O -0.512 6.512 21 O -0.508 6.508 22 C -0.116 4.116 23 C -0.145 4.145 24 C -0.120 4.120 25 C -0.001 4.001 26 C -0.238 4.238 27 H 0.289 0.711 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.412 0.588 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.410 0.590 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 -8.797 -7.746 12.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.460 4.460 8 H 0.105 0.895 9 C 0.134 3.866 10 C -0.204 4.204 11 C -0.035 4.035 12 C -0.883 4.883 13 S 2.791 3.209 14 O -0.974 6.974 15 O -0.974 6.974 16 N -0.885 5.885 17 C 0.015 3.985 18 C -0.095 4.095 19 C 0.350 3.650 20 O -0.400 6.400 21 O -0.319 6.319 22 C -0.154 4.154 23 C -0.183 4.183 24 C -0.157 4.157 25 C -0.021 4.021 26 C -0.259 4.259 27 H 0.100 0.900 28 H 0.144 0.856 29 H 0.121 0.879 30 H 0.245 0.755 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.269 0.731 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.364 -8.905 -7.083 12.579 hybrid contribution -0.163 0.806 -0.109 0.830 sum -5.527 -8.098 -7.192 12.159 Atomic orbital electron populations 1.69805 1.07901 1.30301 1.30857 1.26142 0.94921 1.02166 0.91825 0.86132 0.80795 0.79580 0.79469 1.19102 1.19573 1.17996 1.19968 0.97969 0.91026 1.37034 0.89453 1.17865 0.90399 0.92137 0.86170 1.21419 0.99508 0.96953 1.02516 1.20266 0.96820 0.91671 0.94741 1.29127 1.15305 1.15935 1.27918 1.01263 0.72636 0.74666 0.72301 1.93481 1.60827 1.56594 1.86541 1.93500 1.72837 1.86626 1.44394 1.55800 1.21613 1.88949 1.22176 1.21142 0.95063 1.00689 0.81635 1.21878 0.99535 0.89891 0.98147 1.22622 0.81732 0.86118 0.74501 1.90699 1.23066 1.83882 1.42303 1.84530 1.47415 1.22452 1.77528 1.22985 0.97899 1.03696 0.90844 1.22918 0.96165 1.01554 0.97630 1.23000 0.96471 0.99050 0.97179 1.20176 0.92194 0.97235 0.92520 1.21044 1.03819 0.92709 1.08287 0.89996 0.85620 0.87908 0.75538 0.89555 0.89286 0.73122 0.87726 0.90282 0.90213 0.90298 0.89621 0.87710 0.87762 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.70 10.79 55.55 0.60 -17.10 16 2 C 0.07 1.60 5.19 -17.34 -0.09 1.51 16 3 Si 0.92 16.63 29.59 -169.99 -5.03 11.60 16 4 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 7 C -0.43 -10.35 9.07 -37.74 -0.34 -10.69 16 8 H 0.09 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.14 3.40 5.59 -106.82 -0.60 2.81 16 10 C -0.18 -4.50 8.71 -38.87 -0.34 -4.84 16 11 C -0.01 -0.33 9.49 -39.66 -0.38 -0.71 16 12 C -0.79 -16.85 5.97 -39.29 -0.23 -17.08 16 13 S 2.69 51.58 5.73 -107.50 -0.62 50.97 16 14 O -0.98 -20.57 16.71 -57.17 -0.96 -21.53 16 15 O -0.98 -21.26 17.26 -57.17 -0.99 -22.25 16 16 N -1.13 -17.03 5.79 -10.61 -0.06 -17.09 16 17 C 0.14 1.84 5.55 -4.04 -0.02 1.82 16 18 C -0.09 -1.02 0.91 -154.85 -0.14 -1.16 16 19 C 0.51 6.23 6.83 36.01 0.25 6.47 16 20 O -0.51 -7.39 16.68 -18.75 -0.31 -7.70 16 21 O -0.51 -5.21 13.42 -39.25 -0.53 -5.73 16 22 C -0.12 -1.01 7.22 -25.92 -0.19 -1.19 16 23 C -0.15 -1.25 7.80 -25.93 -0.20 -1.45 16 24 C -0.12 -1.23 6.62 -25.92 -0.17 -1.40 16 25 C 0.00 -0.02 9.49 -39.66 -0.38 -0.40 16 26 C -0.24 -5.42 9.80 -38.87 -0.38 -5.80 16 27 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 28 H 0.13 3.13 6.02 -52.49 -0.32 2.82 16 29 H 0.10 2.20 7.60 -52.49 -0.40 1.80 16 30 H 0.41 5.67 8.31 -34.47 -0.29 5.39 16 31 H 0.09 1.06 8.04 -51.93 -0.42 0.65 16 32 H 0.09 1.18 7.72 -51.93 -0.40 0.78 16 33 H 0.41 2.45 9.10 45.56 0.41 2.86 16 34 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 35 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.09 0.95 7.34 -51.93 -0.38 0.57 16 39 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 40 H 0.10 1.99 7.60 -52.48 -0.40 1.59 16 41 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -31.64 362.02 -9.91 -41.55 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -4.26 Total: 13.96 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -3.21 Total: -32.12 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.54 Total: -34.19 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -2.78 Total: -57.21 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: 51.58 SS G_CDS: -0.62 Total: 50.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.64 -9.91 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166674248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.817 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds