Wall clock time and date at job start Tue Mar 31 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48503 * 109.46858 * 274.97961 * 3 2 1 5 5 H 1.48496 * 109.47213 * 34.98388 * 3 2 1 6 6 H 1.48504 * 109.47068 * 154.98206 * 3 2 1 7 7 C 1.39944 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99638 * 163.71202 * 7 2 1 9 9 C 1.41400 * 119.99986 * 343.71409 * 7 2 1 10 10 C 1.40716 * 120.24085 * 336.57091 * 9 7 2 11 11 C 1.37617 * 119.73944 * 180.23076 * 10 9 7 12 12 C 1.38636 * 120.24975 * 359.51875 * 11 10 9 13 13 S 1.76205 * 119.75197 * 180.27554 * 12 11 10 14 14 O 1.42094 * 106.40211 * 203.54275 * 13 12 11 15 15 O 1.42100 * 106.40061 * 336.46301 * 13 12 11 16 16 N 1.65600 * 107.21608 * 89.99994 * 13 12 11 17 17 C 1.46504 * 119.99861 * 65.00260 * 16 13 12 18 18 C 1.53000 * 109.46762 * 163.59930 * 17 16 13 19 19 C 1.50707 * 112.84942 * 293.51468 * 18 17 16 20 20 O 1.20821 * 119.99768 * 116.30282 * 19 18 17 21 21 O 1.34228 * 120.00005 * 296.30236 * 19 18 17 22 22 C 1.53780 * 113.61519 * 162.21187 * 18 17 16 23 23 C 1.53775 * 87.08128 * 220.01634 * 22 18 17 24 24 C 1.53775 * 87.08267 * 25.43085 * 23 22 18 25 25 C 1.38636 * 120.49952 * 0.25699 * 12 11 10 26 26 C 1.37616 * 120.25218 * 359.97438 * 25 12 11 27 27 H 0.97004 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.13428 * 0.02949 * 10 9 7 29 29 H 1.07994 * 119.88078 * 179.79330 * 11 10 9 30 30 H 0.97000 * 119.99712 * 245.00078 * 16 13 12 31 31 H 1.09001 * 109.47148 * 283.59441 * 17 16 13 32 32 H 1.08998 * 109.47103 * 43.59943 * 17 16 13 33 33 H 0.96696 * 117.00571 * 179.97438 * 21 19 18 34 34 H 1.09006 * 113.61440 * 334.56528 * 22 18 17 35 35 H 1.08997 * 113.62054 * 105.46380 * 22 18 17 36 36 H 1.09000 * 113.61488 * 270.88060 * 23 22 18 37 37 H 1.09008 * 113.61650 * 139.97877 * 23 22 18 38 38 H 1.09002 * 113.61209 * 220.01942 * 24 23 22 39 39 H 1.09001 * 113.61785 * 89.11526 * 24 23 22 40 40 H 1.08008 * 119.87605 * 179.97438 * 25 12 11 41 41 H 1.07993 * 120.12897 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3844 2.1072 -1.3948 5 1 1.4962 2.6200 0.8027 6 1 3.5884 1.4122 0.5921 7 6 2.0080 -1.2119 0.0005 8 1 3.0554 -1.2307 -0.2618 9 6 1.3435 -2.4118 0.3445 10 6 0.1813 -2.3762 1.1370 11 6 -0.4544 -3.5506 1.4695 12 6 0.0404 -4.7646 1.0186 13 16 -0.7881 -6.2597 1.4462 14 8 0.1793 -7.2961 1.3503 15 8 -1.5202 -5.9873 2.6333 16 7 -1.9086 -6.5548 0.2632 17 6 -1.4709 -6.8408 -1.1054 18 6 -2.6258 -7.4668 -1.8898 19 6 -3.0099 -8.8309 -1.3772 20 8 -4.1079 -9.0123 -0.9068 21 8 -2.1322 -9.8443 -1.4431 22 6 -2.4364 -7.4107 -3.4149 23 6 -3.9358 -7.0827 -3.5100 24 6 -3.8233 -6.5216 -2.0827 25 6 1.1821 -4.8111 0.2334 26 6 1.8368 -3.6497 -0.1076 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2085 -1.4313 1.4856 29 1 -1.3447 -3.5262 2.0804 30 1 -2.8548 -6.5383 0.4764 31 1 -1.1631 -5.9140 -1.5896 32 1 -0.6304 -7.5343 -1.0806 33 1 -2.4237 -10.7006 -1.1015 34 1 -1.7898 -6.5976 -3.7450 35 1 -2.1705 -8.3705 -3.8575 36 1 -4.5719 -7.9648 -3.5836 37 1 -4.1707 -6.3265 -4.2592 38 1 -4.6771 -6.7637 -1.4499 39 1 -3.5559 -5.4654 -2.0485 40 1 1.5590 -5.7625 -0.1121 41 1 2.7257 -3.6882 -0.7197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166674248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:59 Heat of formation + Delta-G solvation = -160.086506 kcal Electronic energy + Delta-G solvation = -27447.174814 eV Core-core repulsion = 23417.950182 eV Total energy + Delta-G solvation = -4029.224632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.03793 -39.37097 -39.26376 -38.16159 -37.10498 -36.80978 -35.80823 -35.61138 -32.04214 -31.25804 -29.35409 -27.60929 -26.65207 -25.47338 -23.26420 -23.14929 -22.90996 -20.48799 -20.26166 -19.41162 -18.94380 -18.73124 -18.28648 -17.66550 -17.19050 -16.95118 -16.68846 -15.99447 -15.76439 -15.55975 -15.25873 -14.98673 -14.93559 -14.72415 -14.08538 -13.95128 -13.82535 -13.59004 -13.40362 -13.32221 -13.13944 -13.04012 -12.89612 -12.84501 -12.71687 -12.59094 -12.58329 -12.02702 -11.98967 -11.55861 -11.46250 -11.41643 -11.37675 -11.24107 -11.20138 -10.44527 -9.76981 -9.52087 -8.84090 -6.63428 -0.33446 0.49785 1.09027 1.10373 1.37623 1.43631 1.53790 2.00592 2.12526 2.22392 2.53703 2.92174 3.28466 3.47388 3.51261 3.57547 3.72791 3.83477 4.19188 4.32951 4.34838 4.38810 4.43447 4.69686 4.79256 4.85347 4.86584 4.90672 4.96814 5.06568 5.07334 5.10554 5.14956 5.26206 5.41016 5.54627 5.55721 5.62164 5.79887 5.95547 6.04208 6.17426 6.51944 6.70738 6.83673 6.94434 8.09002 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.003264 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.673998 B = 8577.069542 C = 9430.252998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.092 0.908 9 C 0.111 3.889 10 C -0.208 4.208 11 C -0.021 4.021 12 C -0.793 4.793 13 S 2.723 3.277 14 O -0.997 6.997 15 O -1.008 7.008 16 N -1.117 6.117 17 C 0.133 3.867 18 C -0.097 4.097 19 C 0.508 3.492 20 O -0.540 6.540 21 O -0.507 6.507 22 C -0.107 4.107 23 C -0.138 4.138 24 C -0.124 4.124 25 C 0.000 4.000 26 C -0.253 4.253 27 H 0.298 0.702 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.419 0.581 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.428 0.572 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 -9.050 -9.103 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.110 0.890 9 C 0.107 3.893 10 C -0.228 4.228 11 C -0.041 4.041 12 C -0.887 4.887 13 S 2.820 3.180 14 O -0.987 6.987 15 O -0.998 6.998 16 N -0.877 5.877 17 C 0.008 3.992 18 C -0.100 4.100 19 C 0.351 3.649 20 O -0.430 6.430 21 O -0.320 6.320 22 C -0.145 4.145 23 C -0.175 4.175 24 C -0.162 4.162 25 C -0.020 4.020 26 C -0.273 4.273 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.255 0.745 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.289 0.711 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.147 0.853 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.044 -9.166 -8.445 13.446 hybrid contribution -0.320 0.730 0.310 0.855 sum -5.364 -8.436 -8.135 12.889 Atomic orbital electron populations 1.69835 1.09261 1.31716 1.30936 1.26975 0.95588 1.05089 0.90786 0.85065 0.79170 0.75096 0.79793 1.18127 1.18945 1.18011 1.20258 0.98436 0.91921 1.38353 0.88998 1.18205 0.90878 0.93392 0.86787 1.21420 1.00484 0.97076 1.03858 1.20431 0.97017 0.91924 0.94749 1.29507 1.15680 1.16504 1.27004 1.00310 0.72288 0.73449 0.71974 1.93461 1.61898 1.56502 1.86877 1.93463 1.73232 1.86752 1.46390 1.55414 1.21307 1.88354 1.22630 1.21389 0.96002 1.01421 0.80431 1.21964 0.99098 0.89435 0.99493 1.22834 0.81434 0.86771 0.73842 1.90691 1.24241 1.84457 1.43576 1.84495 1.46935 1.23276 1.77282 1.23034 0.98146 1.04790 0.88515 1.22877 0.96148 1.01698 0.96770 1.23042 0.95719 0.99117 0.98288 1.20465 0.91755 0.97896 0.91864 1.21276 1.04586 0.92664 1.08806 0.89099 0.86918 0.87151 0.74541 0.88628 0.89208 0.71077 0.86425 0.89263 0.90517 0.88754 0.90849 0.87393 0.85267 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.17 10.79 21.83 0.24 -36.93 16 2 C 0.04 1.57 5.19 85.26 0.44 2.02 16 3 Si 0.99 33.64 29.59 68.60 2.03 35.67 16 4 H -0.26 -8.31 7.11 99.48 0.71 -7.61 16 5 H -0.27 -8.68 7.11 99.48 0.71 -7.97 16 6 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 7 C -0.46 -22.45 9.07 23.46 0.21 -22.23 16 8 H 0.09 4.20 7.90 -2.91 -0.02 4.17 16 9 C 0.11 5.57 5.59 -21.29 -0.12 5.45 16 10 C -0.21 -10.48 8.71 22.73 0.20 -10.28 16 11 C -0.02 -0.98 9.49 22.22 0.21 -0.77 16 12 C -0.79 -33.57 5.97 22.46 0.13 -33.43 16 13 S 2.72 101.51 5.73 -56.49 -0.32 101.19 16 14 O -1.00 -40.10 16.71 -128.00 -2.14 -42.24 16 15 O -1.01 -43.00 17.26 -128.00 -2.21 -45.21 16 16 N -1.12 -32.25 5.79 -187.48 -1.09 -33.33 16 17 C 0.13 3.22 5.55 86.38 0.48 3.70 16 18 C -0.10 -1.98 0.91 -52.40 -0.05 -2.03 16 19 C 0.51 11.67 6.83 71.24 0.49 12.15 16 20 O -0.54 -15.10 16.68 21.98 0.37 -14.74 16 21 O -0.51 -9.38 13.42 -51.40 -0.69 -10.07 16 22 C -0.11 -1.57 7.22 31.12 0.22 -1.35 16 23 C -0.14 -2.06 7.80 31.12 0.24 -1.82 16 24 C -0.12 -2.38 6.62 31.12 0.21 -2.17 16 25 C 0.00 0.00 9.49 22.22 0.21 0.21 16 26 C -0.25 -11.49 9.80 22.73 0.22 -11.27 16 27 H 0.30 12.38 8.30 -92.71 -0.77 11.61 16 28 H 0.11 5.85 6.02 -2.91 -0.02 5.83 16 29 H 0.11 4.79 7.60 -2.91 -0.02 4.77 16 30 H 0.42 11.13 8.31 -96.75 -0.80 10.33 16 31 H 0.10 2.16 8.04 -2.39 -0.02 2.14 16 32 H 0.09 2.19 7.72 -2.39 -0.02 2.17 16 33 H 0.43 4.31 9.10 -74.06 -0.67 3.63 16 34 H 0.12 1.45 8.03 -2.38 -0.02 1.43 16 35 H 0.09 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.59 7.34 -2.39 -0.02 1.57 16 39 H 0.11 1.98 8.10 -2.39 -0.02 1.96 16 40 H 0.13 4.67 7.60 -2.91 -0.02 4.65 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -67.48 362.02 -1.10 -68.58 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.39 Total: 38.89 kcal Atomic # 6 Polarization: -64.92 SS G_CDS: 3.10 Total: -61.81 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -0.85 Total: -70.26 kcal Atomic # 8 Polarization: -107.59 SS G_CDS: -4.67 Total: -112.26 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.03 Total: 35.67 kcal Atomic # 16 Polarization: 101.51 SS G_CDS: -0.32 Total: 101.19 kcal Total: -67.48 -1.10 -68.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166674248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.507 kcal (2) G-P(sol) polarization free energy of solvation -67.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds