Wall clock time and date at job start Tue Mar 31 2020 22:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86801 * 120.00351 * 2 1 4 4 H 1.48506 * 109.46796 * 239.99795 * 3 2 1 5 5 H 1.48498 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47094 * 119.99742 * 3 2 1 7 7 C 1.38634 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00000 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00067 * 0.02562 * 7 2 1 10 10 C 1.35776 * 116.99608 * 174.95900 * 9 7 2 11 11 C 1.38900 * 120.00629 * 5.34577 * 10 9 7 12 12 C 1.38005 * 120.00755 * 180.02562 * 11 10 9 13 13 C 1.38920 * 119.99535 * 359.97438 * 12 11 10 14 14 N 1.39985 * 120.00255 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99775 * 35.12314 * 14 13 12 16 16 O 1.21291 * 120.00094 * 355.48684 * 15 14 13 17 17 C 1.50706 * 119.99828 * 175.49446 * 15 14 13 18 18 H 1.08995 * 109.55003 * 39.79954 * 17 15 14 19 19 C 1.53041 * 109.54409 * 279.51307 * 17 15 14 20 20 C 1.52592 * 109.98200 * 176.50070 * 19 17 15 21 21 C 1.52586 * 110.64349 * 69.98455 * 20 19 17 22 22 C 1.53034 * 109.98586 * 290.01186 * 21 20 19 23 23 S 1.81667 * 108.99963 * 63.65149 * 22 21 20 24 24 O 1.42096 * 108.66461 * 60.02839 * 23 22 21 25 25 O 1.42100 * 108.66611 * 191.37383 * 23 22 21 26 26 C 1.38922 * 119.99479 * 0.26809 * 13 12 11 27 27 C 1.38007 * 120.00224 * 359.49788 * 26 13 12 28 28 H 0.96997 * 119.99457 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99839 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.99875 * 179.97438 * 12 11 10 31 31 H 0.96994 * 120.00592 * 215.11803 * 14 13 12 32 32 H 1.08996 * 109.38809 * 56.34242 * 19 17 15 33 33 H 1.09001 * 109.38722 * 296.65382 * 19 17 15 34 34 H 1.09004 * 109.23544 * 309.68347 * 20 19 17 35 35 H 1.09001 * 109.23913 * 190.28720 * 20 19 17 36 36 H 1.08999 * 109.38672 * 50.17169 * 21 20 19 37 37 H 1.09000 * 109.37978 * 169.85471 * 21 20 19 38 38 H 1.09003 * 109.54970 * 183.50409 * 22 21 20 39 39 H 1.09001 * 109.55105 * 303.79496 * 22 21 20 40 40 H 1.08010 * 119.99845 * 179.72550 * 26 13 12 41 41 H 1.07997 * 120.00101 * 180.20553 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0702 -3.5045 -0.1052 11 6 3.4576 -3.4375 -0.0952 12 6 4.2052 -4.5924 -0.2033 13 6 3.5701 -5.8223 -0.3215 14 7 4.3283 -6.9940 -0.4305 15 6 5.4941 -7.1068 0.2364 16 8 5.9268 -6.1641 0.8651 17 6 6.2601 -8.4042 0.2009 18 1 6.2138 -8.8277 -0.8024 19 6 5.6493 -9.3869 1.2025 20 6 6.3622 -10.7331 1.1132 21 6 7.7820 -10.6274 1.6619 22 6 8.6478 -9.7930 0.7153 23 16 7.9931 -8.0996 0.6529 24 8 8.0314 -7.5487 1.9622 25 8 8.6260 -7.4062 -0.4138 26 6 2.1826 -5.8889 -0.3366 27 6 1.4351 -4.7343 -0.2237 28 1 -0.4849 0.8401 -0.0004 29 1 3.9513 -2.4812 -0.0037 30 1 5.2839 -4.5401 -0.1959 31 1 4.0148 -7.7247 -0.9860 32 1 4.5914 -9.5222 0.9775 33 1 5.7549 -8.9879 2.2113 34 1 6.4024 -11.0497 0.0709 35 1 5.8077 -11.4723 1.6913 36 1 7.7565 -10.1520 2.6424 37 1 8.2085 -11.6260 1.7567 38 1 9.6744 -9.7739 1.0814 39 1 8.6231 -10.2306 -0.2827 40 1 1.6888 -6.8446 -0.4329 41 1 0.3564 -4.7864 -0.2320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168438618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:20 Heat of formation + Delta-G solvation = -101.941599 kcal Electronic energy + Delta-G solvation = -26918.911550 eV Core-core repulsion = 22892.208270 eV Total energy + Delta-G solvation = -4026.703280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46616 -38.81679 -37.72590 -36.93608 -36.59381 -36.14979 -34.14590 -32.56810 -32.11520 -30.24197 -28.93220 -27.58871 -25.33109 -24.52454 -22.54516 -21.75977 -21.54434 -20.33976 -19.12409 -18.32087 -17.82651 -17.34968 -17.05580 -16.50375 -16.15887 -15.95079 -15.46186 -15.05384 -14.60648 -14.48079 -14.39069 -14.09662 -13.92668 -13.60215 -13.59851 -13.31660 -12.90980 -12.61678 -12.43010 -12.26265 -12.21937 -12.10109 -11.86816 -11.77099 -11.61625 -11.57298 -11.50925 -11.02116 -10.99884 -10.78796 -10.58629 -10.44740 -9.96996 -9.77095 -9.22685 -8.72278 -8.24384 -7.00287 -6.45374 -4.02874 -0.38936 1.92734 2.17183 2.34866 2.55372 2.88586 3.16466 3.17572 3.19736 3.51519 3.60681 3.98296 3.99199 4.03231 4.16678 4.28530 4.35464 4.47092 4.57571 4.66871 4.86241 4.98948 5.08821 5.21066 5.22619 5.23404 5.39356 5.45062 5.60592 5.62454 5.71179 6.05356 6.12185 6.27821 6.66144 6.78072 6.94341 7.02656 7.28172 7.41129 7.49122 7.71534 7.99632 8.10315 9.00352 9.68219 10.72239 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.002485 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.919933 B =11264.776735 C =12116.537776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.149 3.851 11 C -0.220 4.220 12 C -0.062 4.062 13 C 0.024 3.976 14 N -0.643 5.643 15 C 0.532 3.468 16 O -0.509 6.509 17 C -0.606 4.606 18 H 0.155 0.845 19 C -0.100 4.100 20 C -0.138 4.138 21 C -0.113 4.113 22 C -0.612 4.612 23 S 2.445 3.555 24 O -0.904 6.904 25 O -0.931 6.931 26 C -0.088 4.088 27 C -0.179 4.179 28 H 0.271 0.729 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.404 0.596 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.884 -25.392 -0.630 28.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.095 3.905 11 C -0.240 4.240 12 C -0.082 4.082 13 C -0.068 4.068 14 N -0.287 5.287 15 C 0.316 3.684 16 O -0.385 6.385 17 C -0.715 4.715 18 H 0.172 0.828 19 C -0.139 4.139 20 C -0.176 4.176 21 C -0.152 4.152 22 C -0.741 4.741 23 S 2.621 3.379 24 O -0.901 6.901 25 O -0.928 6.928 26 C -0.108 4.108 27 C -0.199 4.199 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.144 0.856 31 H 0.239 0.761 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.133 0.867 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.168 -23.697 0.003 27.109 hybrid contribution -0.055 -0.444 -0.653 0.791 sum 13.113 -24.140 -0.650 27.480 Atomic orbital electron populations 1.70036 1.05973 1.27858 1.45810 1.25295 0.95859 0.98878 0.96415 0.85770 0.78702 0.79599 0.79347 1.19426 1.20272 1.19378 1.21320 0.91904 0.80765 1.52777 0.88955 1.83971 1.34313 1.11451 1.77952 1.19423 0.90265 0.88150 0.92690 1.21116 0.93554 0.98828 1.10500 1.20888 0.99976 0.90358 0.96947 1.17230 0.89900 0.84970 1.14724 1.42976 1.21091 1.17761 1.46866 1.19160 0.82405 0.87094 0.79782 1.90896 1.67274 1.38700 1.41620 1.30717 1.25428 1.03858 1.11504 0.82751 1.21317 1.01889 0.92414 0.98264 1.21720 0.95395 0.97305 1.03135 1.21324 0.93782 1.01652 0.98396 1.30383 1.11286 1.23157 1.09233 1.07766 0.76679 0.77406 0.76042 1.93606 1.84510 1.74330 1.37666 1.93598 1.72274 1.69630 1.57251 1.20323 0.91213 0.97510 1.01767 1.19986 0.99500 0.89807 1.10580 0.91930 0.85014 0.85561 0.76098 0.88891 0.88839 0.90436 0.89101 0.89383 0.89281 0.84472 0.84839 0.86682 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.88 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.39 -11.07 9.48 30.88 0.29 -10.78 16 8 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 9 O -0.17 -4.97 9.76 0.00 0.00 -4.97 16 10 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 11 C -0.22 -5.05 9.16 -39.42 -0.36 -5.41 16 12 C -0.06 -1.28 8.69 -39.41 -0.34 -1.62 16 13 C 0.02 0.42 6.30 -83.63 -0.53 -0.11 16 14 N -0.64 -8.46 5.34 -9.82 -0.05 -8.51 16 15 C 0.53 7.48 6.85 -10.98 -0.08 7.41 16 16 O -0.51 -9.70 12.86 -9.32 -0.12 -9.82 16 17 C -0.61 -5.16 2.81 -27.86 -0.08 -5.24 16 18 H 0.15 0.65 8.14 -51.93 -0.42 0.23 16 19 C -0.10 -0.61 5.00 -26.92 -0.13 -0.75 16 20 C -0.14 -0.45 5.63 -27.15 -0.15 -0.60 16 21 C -0.11 -0.45 5.73 -26.93 -0.15 -0.60 16 22 C -0.61 -2.97 6.35 37.17 0.24 -2.74 16 23 S 2.44 25.65 4.25 -107.50 -0.46 25.20 16 24 O -0.90 -13.25 17.11 -64.26 -1.10 -14.35 16 25 O -0.93 -13.24 18.10 -57.81 -1.05 -14.28 16 26 C -0.09 -1.50 9.96 -39.41 -0.39 -1.89 16 27 C -0.18 -3.68 9.99 -39.42 -0.39 -4.07 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.13 3.05 5.63 -52.48 -0.30 2.75 16 30 H 0.13 2.62 6.23 -52.49 -0.33 2.29 16 31 H 0.40 3.49 8.82 -40.82 -0.36 3.13 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.70 8.01 -51.93 -0.42 0.29 16 34 H 0.08 0.12 8.09 -51.93 -0.42 -0.30 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 0.40 8.01 -51.93 -0.42 -0.01 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -39.24 353.31 -9.18 -48.42 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.02 Total: 3.72 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -2.44 Total: -22.01 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.71 Total: -33.08 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -2.27 Total: -43.42 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 25.65 SS G_CDS: -0.46 Total: 25.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -39.24 -9.18 -48.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168438618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.526 kcal (2) G-P(sol) polarization free energy of solvation -39.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds