Wall clock time and date at job start Tue Mar 31 2020 22:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86801 * 120.00351 * 2 1 4 4 H 1.48506 * 109.46796 * 239.99795 * 3 2 1 5 5 H 1.48498 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47094 * 119.99742 * 3 2 1 7 7 C 1.38634 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00000 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00067 * 0.02562 * 7 2 1 10 10 C 1.35776 * 116.99608 * 174.95900 * 9 7 2 11 11 C 1.38900 * 120.00629 * 5.34577 * 10 9 7 12 12 C 1.38005 * 120.00755 * 180.02562 * 11 10 9 13 13 C 1.38920 * 119.99535 * 359.97438 * 12 11 10 14 14 N 1.39985 * 120.00255 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99775 * 35.12314 * 14 13 12 16 16 O 1.21291 * 120.00094 * 355.48684 * 15 14 13 17 17 C 1.50706 * 119.99828 * 175.49446 * 15 14 13 18 18 H 1.08995 * 109.55003 * 39.79954 * 17 15 14 19 19 C 1.53041 * 109.54409 * 279.51307 * 17 15 14 20 20 C 1.52592 * 109.98200 * 176.50070 * 19 17 15 21 21 C 1.52586 * 110.64349 * 69.98455 * 20 19 17 22 22 C 1.53034 * 109.98586 * 290.01186 * 21 20 19 23 23 S 1.81667 * 108.99963 * 63.65149 * 22 21 20 24 24 O 1.42096 * 108.66461 * 60.02839 * 23 22 21 25 25 O 1.42100 * 108.66611 * 191.37383 * 23 22 21 26 26 C 1.38922 * 119.99479 * 0.26809 * 13 12 11 27 27 C 1.38007 * 120.00224 * 359.49788 * 26 13 12 28 28 H 0.96997 * 119.99457 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99839 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.99875 * 179.97438 * 12 11 10 31 31 H 0.96994 * 120.00592 * 215.11803 * 14 13 12 32 32 H 1.08996 * 109.38809 * 56.34242 * 19 17 15 33 33 H 1.09001 * 109.38722 * 296.65382 * 19 17 15 34 34 H 1.09004 * 109.23544 * 309.68347 * 20 19 17 35 35 H 1.09001 * 109.23913 * 190.28720 * 20 19 17 36 36 H 1.08999 * 109.38672 * 50.17169 * 21 20 19 37 37 H 1.09000 * 109.37978 * 169.85471 * 21 20 19 38 38 H 1.09003 * 109.54970 * 183.50409 * 22 21 20 39 39 H 1.09001 * 109.55105 * 303.79496 * 22 21 20 40 40 H 1.08010 * 119.99845 * 179.72550 * 26 13 12 41 41 H 1.07997 * 120.00101 * 180.20553 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0702 -3.5045 -0.1052 11 6 3.4576 -3.4375 -0.0952 12 6 4.2052 -4.5924 -0.2033 13 6 3.5701 -5.8223 -0.3215 14 7 4.3283 -6.9940 -0.4305 15 6 5.4941 -7.1068 0.2364 16 8 5.9268 -6.1641 0.8651 17 6 6.2601 -8.4042 0.2009 18 1 6.2138 -8.8277 -0.8024 19 6 5.6493 -9.3869 1.2025 20 6 6.3622 -10.7331 1.1132 21 6 7.7820 -10.6274 1.6619 22 6 8.6478 -9.7930 0.7153 23 16 7.9931 -8.0996 0.6529 24 8 8.0314 -7.5487 1.9622 25 8 8.6260 -7.4062 -0.4138 26 6 2.1826 -5.8889 -0.3366 27 6 1.4351 -4.7343 -0.2237 28 1 -0.4849 0.8401 -0.0004 29 1 3.9513 -2.4812 -0.0037 30 1 5.2839 -4.5401 -0.1959 31 1 4.0148 -7.7247 -0.9860 32 1 4.5914 -9.5222 0.9775 33 1 5.7549 -8.9879 2.2113 34 1 6.4024 -11.0497 0.0709 35 1 5.8077 -11.4723 1.6913 36 1 7.7565 -10.1520 2.6424 37 1 8.2085 -11.6260 1.7567 38 1 9.6744 -9.7739 1.0814 39 1 8.6231 -10.2306 -0.2827 40 1 1.6888 -6.8446 -0.4329 41 1 0.3564 -4.7864 -0.2320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168438618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:19 Heat of formation + Delta-G solvation = -133.520946 kcal Electronic energy + Delta-G solvation = -26920.280933 eV Core-core repulsion = 22892.208270 eV Total energy + Delta-G solvation = -4028.072663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75990 -40.50482 -38.53310 -38.19743 -37.56319 -37.04771 -35.57543 -34.23756 -33.11619 -31.91406 -29.93370 -28.70258 -27.28493 -25.16097 -24.08475 -23.29063 -21.95073 -21.63541 -20.16302 -19.78055 -19.30637 -18.52393 -18.37388 -17.51201 -17.21593 -16.76342 -16.55195 -16.29362 -15.98024 -15.79319 -15.53101 -15.35902 -15.11982 -14.81025 -14.72113 -14.48071 -14.18455 -13.84410 -13.60473 -13.39135 -13.27634 -13.21792 -13.11927 -12.84846 -12.73522 -12.62965 -12.47686 -12.32519 -12.16695 -11.76812 -11.62535 -11.50228 -11.33653 -11.09818 -10.87075 -10.59807 -9.89831 -8.70640 -8.50194 -6.17088 -1.11160 0.42118 0.48806 1.30027 1.33059 1.43995 1.48380 1.67050 1.81977 2.15806 2.75977 2.79333 2.94041 3.10397 3.31436 3.47418 3.53093 3.72172 3.79645 3.90614 4.03336 4.06603 4.08639 4.28256 4.42875 4.56419 4.60155 4.65690 4.70288 4.86005 4.95921 5.03033 5.05987 5.16107 5.23495 5.28262 5.36169 5.38924 5.50668 5.65317 5.98534 6.06678 6.29103 6.94149 6.99669 7.71988 8.72065 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.002485 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.919933 B =11264.776735 C =12116.537776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.017 4.017 3 Si 1.014 2.986 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.417 4.417 8 H 0.095 0.905 9 O -0.223 6.223 10 C 0.110 3.890 11 C -0.232 4.232 12 C -0.081 4.081 13 C 0.053 3.947 14 N -0.629 5.629 15 C 0.522 3.478 16 O -0.566 6.566 17 C -0.587 4.587 18 H 0.209 0.791 19 C -0.103 4.103 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.568 4.568 23 S 2.407 3.593 24 O -0.969 6.969 25 O -0.987 6.987 26 C -0.068 4.068 27 C -0.179 4.179 28 H 0.274 0.726 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.433 0.567 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.152 0.848 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.784 -30.894 -1.849 33.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.215 4.215 3 Si 0.834 3.166 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.112 0.888 9 O -0.130 6.130 10 C 0.060 3.940 11 C -0.252 4.252 12 C -0.101 4.101 13 C -0.041 4.041 14 N -0.276 5.276 15 C 0.309 3.691 16 O -0.445 6.445 17 C -0.697 4.697 18 H 0.226 0.774 19 C -0.142 4.142 20 C -0.171 4.171 21 C -0.161 4.161 22 C -0.702 4.702 23 S 2.593 3.407 24 O -0.966 6.966 25 O -0.984 6.984 26 C -0.087 4.087 27 C -0.198 4.198 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.273 0.727 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.170 0.830 39 H 0.193 0.807 40 H 0.193 0.807 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.094 -29.239 -1.238 32.482 hybrid contribution -0.173 0.776 -0.264 0.837 sum 13.921 -28.463 -1.503 31.721 Atomic orbital electron populations 1.70158 1.07749 1.28958 1.48403 1.26496 0.96875 1.02444 0.95720 0.84715 0.77511 0.74655 0.79767 1.18347 1.18988 1.18645 1.21715 0.92338 0.81656 1.53586 0.88784 1.83932 1.35484 1.12373 1.81181 1.19963 0.90875 0.88590 0.94619 1.21085 0.93549 0.99183 1.11399 1.20948 0.99670 0.91281 0.98198 1.17385 0.90807 0.85538 1.10328 1.42882 1.20542 1.16919 1.47225 1.20175 0.82164 0.88465 0.78283 1.90897 1.68511 1.41360 1.43688 1.30629 1.22443 1.01242 1.15409 0.77423 1.21495 1.03410 0.93239 0.96038 1.21787 0.94319 0.95353 1.05613 1.21527 0.94529 1.02622 0.97388 1.30101 1.11563 1.16232 1.12338 1.08361 0.77662 0.80505 0.74201 1.93532 1.85516 1.77838 1.39717 1.93528 1.73560 1.73324 1.57958 1.20809 0.90531 0.98616 0.98757 1.20377 1.00557 0.89450 1.09448 0.91652 0.86783 0.86290 0.72672 0.86896 0.91374 0.87075 0.87155 0.90924 0.86015 0.82999 0.80658 0.80722 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.66 13.67 21.61 0.30 -56.37 16 2 C -0.02 -1.00 5.49 84.83 0.47 -0.53 16 3 Si 1.01 44.69 29.55 68.60 2.03 46.71 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.42 -25.23 9.48 67.91 0.64 -24.58 16 8 H 0.09 5.39 5.20 -2.91 -0.02 5.38 16 9 O -0.22 -13.67 9.76 -22.91 -0.22 -13.89 16 10 C 0.11 5.65 6.65 22.59 0.15 5.80 16 11 C -0.23 -11.33 9.16 22.37 0.20 -11.13 16 12 C -0.08 -3.44 8.69 22.38 0.19 -3.24 16 13 C 0.05 1.76 6.30 38.17 0.24 2.00 16 14 N -0.63 -14.35 5.34 -303.37 -1.62 -15.97 16 15 C 0.52 13.84 6.85 87.66 0.60 14.44 16 16 O -0.57 -22.23 12.86 11.15 0.14 -22.09 16 17 C -0.59 -8.00 2.81 29.86 0.08 -7.92 16 18 H 0.21 0.47 8.14 -2.39 -0.02 0.45 16 19 C -0.10 -0.82 5.00 30.47 0.15 -0.67 16 20 C -0.13 -0.02 5.63 30.32 0.17 0.15 16 21 C -0.12 -0.33 5.73 30.47 0.17 -0.16 16 22 C -0.57 -2.93 6.35 71.99 0.46 -2.47 16 23 S 2.41 48.55 4.25 -56.49 -0.24 48.31 16 24 O -0.97 -30.15 17.11 -121.23 -2.07 -32.23 16 25 O -0.99 -28.53 18.10 -127.40 -2.31 -30.83 16 26 C -0.07 -2.07 9.96 22.38 0.22 -1.85 16 27 C -0.18 -7.26 9.99 22.38 0.22 -7.04 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.11 5.81 5.63 -2.91 -0.02 5.79 16 30 H 0.12 5.22 6.23 -2.91 -0.02 5.21 16 31 H 0.43 4.96 8.82 -92.71 -0.82 4.15 16 32 H 0.11 0.48 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.92 8.01 -2.39 -0.02 0.90 16 34 H 0.11 -0.62 8.09 -2.38 -0.02 -0.64 16 35 H 0.11 -0.28 8.14 -2.39 -0.02 -0.29 16 36 H 0.07 0.48 8.01 -2.39 -0.02 0.46 16 37 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.18 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 41 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -99.81 353.31 0.25 -99.56 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.26 Total: 13.99 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 3.99 Total: -37.20 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -1.32 Total: -72.33 kcal Atomic # 8 Polarization: -94.58 SS G_CDS: -4.46 Total: -99.04 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 48.55 SS G_CDS: -0.24 Total: 48.31 kcal Total: -99.81 0.25 -99.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168438618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.961 kcal (2) G-P(sol) polarization free energy of solvation -99.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds