Wall clock time and date at job start Tue Mar 31 2020 22:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86808 * 119.99493 * 2 1 4 4 H 1.48499 * 109.47167 * 270.00268 * 3 2 1 5 5 H 1.48503 * 109.47015 * 30.00326 * 3 2 1 6 6 H 1.48503 * 109.46875 * 149.99951 * 3 2 1 7 7 C 1.38625 * 120.00475 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00279 * 0.02562 * 7 2 1 9 9 O 1.34812 * 120.00022 * 179.97438 * 7 2 1 10 10 C 1.35783 * 117.00197 * 174.96746 * 9 7 2 11 11 C 1.38910 * 119.99478 * 5.33974 * 10 9 7 12 12 C 1.38000 * 120.00153 * 179.97438 * 11 10 9 13 13 C 1.38926 * 119.99822 * 0.02562 * 12 11 10 14 14 N 1.39989 * 120.00238 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99890 * 35.13411 * 14 13 12 16 16 O 1.21296 * 119.99908 * 355.49156 * 15 14 13 17 17 C 1.50700 * 120.00078 * 175.48968 * 15 14 13 18 18 H 1.08999 * 109.54922 * 325.18913 * 17 15 14 19 19 C 1.53036 * 109.55195 * 85.48174 * 17 15 14 20 20 C 1.52578 * 109.98942 * 183.50290 * 19 17 15 21 21 C 1.52578 * 110.73102 * 290.05202 * 20 19 17 22 22 C 1.53034 * 109.99547 * 69.83897 * 21 20 19 23 23 S 1.81672 * 109.54867 * 204.99975 * 17 15 14 24 24 O 1.42100 * 108.66501 * 71.51545 * 23 17 15 25 25 O 1.42098 * 108.74876 * 300.20690 * 23 17 15 26 26 C 1.38919 * 119.99450 * 0.25542 * 13 12 11 27 27 C 1.38000 * 120.00102 * 359.48996 * 26 13 12 28 28 H 0.96998 * 120.00283 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00474 * 0.02562 * 11 10 9 30 30 H 1.07997 * 120.00568 * 180.02562 * 12 11 10 31 31 H 0.96998 * 120.00499 * 215.12506 * 14 13 12 32 32 H 1.09005 * 109.38313 * 303.66355 * 19 17 15 33 33 H 1.09004 * 109.38013 * 63.44786 * 19 17 15 34 34 H 1.09000 * 109.24326 * 50.31396 * 20 19 17 35 35 H 1.09000 * 109.24861 * 169.71582 * 20 19 17 36 36 H 1.09002 * 109.29682 * 309.73220 * 21 20 19 37 37 H 1.08998 * 109.46288 * 190.05404 * 21 20 19 38 38 H 1.08998 * 109.55410 * 176.59879 * 22 21 20 39 39 H 1.09005 * 109.55066 * 56.40203 * 22 21 20 40 40 H 1.08000 * 120.00055 * 179.74570 * 26 13 12 41 41 H 1.07999 * 120.00131 * 180.25372 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 2.4971 2.0466 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4404 0.7001 7 6 2.0090 -1.2005 -0.0005 8 1 1.4691 -2.1358 -0.0014 9 8 3.3571 -1.2004 -0.0011 10 6 3.9737 -2.4055 0.1046 11 6 3.2218 -3.5735 0.0950 12 6 3.8484 -4.7984 0.2018 13 6 5.2312 -4.8633 0.3194 14 7 5.8668 -6.1058 0.4283 15 6 5.3814 -7.1718 -0.2384 16 8 4.3485 -7.0752 -0.8669 17 6 6.1221 -8.4838 -0.2032 18 1 7.1955 -8.2961 -0.1770 19 6 5.7076 -9.2726 1.0410 20 6 6.5151 -10.5640 1.1328 21 6 6.0989 -11.5403 0.0366 22 6 6.5577 -11.0215 -1.3281 23 16 5.7106 -9.4541 -1.6830 24 8 6.3283 -8.8484 -2.8102 25 8 4.3091 -9.6884 -1.7003 26 6 5.9825 -3.6949 0.3348 27 6 5.3563 -2.4703 0.2227 28 1 -0.4850 0.8400 0.0004 29 1 2.1470 -3.5231 0.0032 30 1 3.2640 -5.7065 0.1940 31 1 6.6567 -6.1996 0.9835 32 1 5.8894 -8.6682 1.9297 33 1 4.6466 -9.5147 0.9789 34 1 7.5748 -10.3335 1.0233 35 1 6.3470 -11.0244 2.1063 36 1 5.0137 -11.6427 0.0385 37 1 6.5529 -12.5131 0.2252 38 1 6.3104 -11.7523 -2.0981 39 1 7.6354 -10.8583 -1.3127 40 1 7.0571 -3.7451 0.4303 41 1 5.9407 -1.5622 0.2305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168438732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:23 Heat of formation + Delta-G solvation = -99.735533 kcal Electronic energy + Delta-G solvation = -26928.228478 eV Core-core repulsion = 22901.620860 eV Total energy + Delta-G solvation = -4026.607618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52768 -38.97535 -37.75545 -36.96950 -36.70978 -36.17244 -34.21314 -32.59156 -32.26520 -30.33681 -29.01953 -27.78099 -25.25982 -24.49882 -22.70137 -21.67384 -21.56386 -20.38157 -19.14005 -18.35638 -17.72661 -17.40939 -17.21155 -16.68491 -16.22596 -15.96021 -15.55511 -15.10271 -14.60215 -14.55842 -14.29157 -14.03468 -13.89506 -13.82038 -13.73334 -13.38677 -12.81980 -12.48519 -12.44809 -12.30619 -12.25000 -12.23515 -12.11150 -11.93171 -11.76253 -11.69043 -11.52436 -11.02803 -10.97615 -10.77945 -10.61481 -10.29073 -9.95776 -9.77789 -9.29835 -8.79413 -8.33037 -7.13584 -6.41640 -4.07705 -0.40993 1.82859 2.07246 2.33553 2.52397 2.81730 3.22855 3.25861 3.39437 3.48661 3.58877 3.96783 4.01130 4.13593 4.23215 4.26818 4.33848 4.41915 4.50367 4.65149 4.81682 4.84698 4.97353 5.09798 5.19083 5.21809 5.37802 5.42970 5.50100 5.58572 5.60812 5.98238 6.04611 6.17633 6.51615 6.70007 6.82043 7.01593 7.26731 7.39567 7.55040 7.77812 7.99075 8.06799 8.92850 9.53587 10.65759 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.027283 B = 0.002397 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.051616 B =11680.765358 C =11922.131595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.108 0.892 9 O -0.214 6.214 10 C 0.155 3.845 11 C -0.207 4.207 12 C -0.065 4.065 13 C 0.033 3.967 14 N -0.645 5.645 15 C 0.531 3.469 16 O -0.505 6.505 17 C -0.607 4.607 18 H 0.154 0.846 19 C -0.101 4.101 20 C -0.138 4.138 21 C -0.113 4.113 22 C -0.611 4.611 23 S 2.444 3.556 24 O -0.930 6.930 25 O -0.903 6.903 26 C -0.091 4.091 27 C -0.178 4.178 28 H 0.280 0.720 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.405 0.595 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.195 -23.220 4.430 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.125 0.875 9 O -0.119 6.119 10 C 0.102 3.898 11 C -0.227 4.227 12 C -0.084 4.084 13 C -0.059 4.059 14 N -0.289 5.289 15 C 0.315 3.685 16 O -0.381 6.381 17 C -0.715 4.715 18 H 0.172 0.828 19 C -0.139 4.139 20 C -0.176 4.176 21 C -0.151 4.151 22 C -0.740 4.740 23 S 2.620 3.380 24 O -0.927 6.927 25 O -0.900 6.900 26 C -0.111 4.111 27 C -0.198 4.198 28 H 0.090 0.910 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.240 0.760 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.136 0.864 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.833 -22.533 3.221 28.310 hybrid contribution 1.273 0.409 0.885 1.603 sum 18.106 -22.124 4.106 28.882 Atomic orbital electron populations 1.69656 1.05582 1.28548 1.47680 1.24479 0.95038 0.98860 0.95636 0.86167 0.80269 0.81377 0.78993 1.19840 1.20804 1.18344 1.20795 0.76825 0.96757 1.52106 0.87483 1.83562 1.22697 1.25644 1.79963 1.19167 0.91698 0.85583 0.93376 1.21239 1.01439 0.91211 1.08768 1.20945 0.92368 0.98074 0.97046 1.17303 0.91827 0.83206 1.13544 1.43007 1.31073 1.07683 1.47176 1.19186 0.85392 0.83816 0.80083 1.90915 1.22151 1.83074 1.41913 1.30713 1.11138 1.07689 1.21975 0.82794 1.21322 1.02255 0.95452 0.94876 1.21712 1.00764 0.94587 1.00506 1.21321 1.03139 1.00592 0.90083 1.30379 1.14347 1.21986 1.07287 1.07806 0.76584 0.77739 0.75887 1.93604 1.78759 1.75247 1.45099 1.93611 1.27127 1.84064 1.85160 1.20333 0.98164 0.90679 1.01932 1.19982 0.91945 0.97301 1.10543 0.90990 0.84395 0.85234 0.76021 0.88914 0.88761 0.90455 0.89089 0.89378 0.89254 0.84443 0.84845 0.86446 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 13.96 55.48 0.77 -24.78 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.68 28.62 -169.99 -4.86 16.81 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.39 -11.06 9.94 30.88 0.31 -10.76 16 8 H 0.11 3.13 5.43 -52.49 -0.28 2.84 16 9 O -0.21 -5.65 8.58 0.00 0.00 -5.65 16 10 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 11 C -0.21 -4.66 9.16 -39.42 -0.36 -5.03 16 12 C -0.06 -1.29 8.69 -39.41 -0.34 -1.64 16 13 C 0.03 0.57 6.30 -83.62 -0.53 0.04 16 14 N -0.65 -8.17 5.34 -9.82 -0.05 -8.22 16 15 C 0.53 7.29 6.80 -10.98 -0.07 7.21 16 16 O -0.51 -9.47 12.91 -9.56 -0.12 -9.59 16 17 C -0.61 -4.99 2.81 -27.86 -0.08 -5.07 16 18 H 0.15 0.61 8.14 -51.93 -0.42 0.19 16 19 C -0.10 -0.58 5.00 -26.93 -0.13 -0.71 16 20 C -0.14 -0.41 5.62 -27.16 -0.15 -0.57 16 21 C -0.11 -0.42 5.74 -26.93 -0.15 -0.58 16 22 C -0.61 -2.88 6.34 37.18 0.24 -2.65 16 23 S 2.44 25.35 4.31 -107.50 -0.46 24.89 16 24 O -0.93 -13.26 18.10 -57.82 -1.05 -14.30 16 25 O -0.90 -13.10 17.08 -64.33 -1.10 -14.20 16 26 C -0.09 -1.48 9.96 -39.42 -0.39 -1.87 16 27 C -0.18 -3.43 9.99 -39.42 -0.39 -3.82 16 28 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.14 3.28 5.63 -52.49 -0.30 2.99 16 30 H 0.13 2.60 6.22 -52.49 -0.33 2.27 16 31 H 0.40 3.27 8.82 -40.82 -0.36 2.91 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.67 8.02 -51.93 -0.42 0.25 16 34 H 0.08 0.10 8.09 -51.93 -0.42 -0.32 16 35 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.09 0.39 8.03 -51.93 -0.42 -0.03 16 37 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.14 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 40 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -38.51 352.25 -9.03 -47.54 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.04 Total: 2.60 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.42 Total: -20.41 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.72 Total: -33.00 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -2.27 Total: -43.74 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.86 Total: 16.81 kcal Atomic # 16 Polarization: 25.35 SS G_CDS: -0.46 Total: 24.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.51 -9.03 -47.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168438732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.197 kcal (2) G-P(sol) polarization free energy of solvation -38.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds