Wall clock time and date at job start Tue Mar 31 2020 22:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86804 * 119.99700 * 2 1 4 4 H 1.48497 * 109.47431 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47000 * 120.00231 * 3 2 1 6 6 H 1.48501 * 109.46596 * 239.99787 * 3 2 1 7 7 C 1.38650 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99961 * 180.02562 * 7 2 1 9 9 O 1.34837 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99621 * 174.96521 * 9 7 2 11 11 C 1.38947 * 120.03245 * 185.06195 * 10 9 7 12 12 C 1.38123 * 120.07284 * 179.76738 * 11 10 9 13 13 C 1.38201 * 120.13515 * 0.51354 * 12 11 10 14 14 C 1.38922 * 120.07023 * 359.74165 * 13 12 11 15 15 N 1.39919 * 120.03597 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00119 * 35.11029 * 15 14 13 17 17 O 1.21288 * 119.99974 * 355.48300 * 16 15 14 18 18 C 1.50699 * 120.00439 * 175.48682 * 16 15 14 19 19 H 1.09004 * 109.54464 * 335.00027 * 18 16 15 20 20 C 1.53032 * 109.55396 * 214.80616 * 18 16 15 21 21 C 1.52593 * 109.98463 * 176.49577 * 20 18 16 22 22 C 1.52584 * 110.64538 * 69.98773 * 21 20 18 23 23 C 1.53040 * 109.98466 * 290.01257 * 22 21 20 24 24 S 1.81674 * 109.55026 * 95.18587 * 18 16 15 25 25 O 1.42097 * 108.66623 * 288.48939 * 24 18 16 26 26 O 1.42107 * 108.65736 * 59.82922 * 24 18 16 27 27 C 1.38735 * 120.03373 * 5.34407 * 10 9 7 28 28 H 0.97001 * 119.99797 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.96440 * 0.03130 * 11 10 9 30 30 H 1.08002 * 119.93419 * 180.25736 * 12 11 10 31 31 H 1.08002 * 119.96715 * 179.76486 * 13 12 11 32 32 H 0.97004 * 120.00358 * 215.10267 * 15 14 13 33 33 H 1.08996 * 109.38239 * 296.65099 * 20 18 16 34 34 H 1.08993 * 109.38604 * 56.44062 * 20 18 16 35 35 H 1.09000 * 109.23667 * 190.28446 * 21 20 18 36 36 H 1.08997 * 109.24070 * 309.68260 * 21 20 18 37 37 H 1.09007 * 109.38526 * 50.16823 * 22 21 20 38 38 H 1.08994 * 109.38956 * 169.85311 * 22 21 20 39 39 H 1.09001 * 109.54766 * 183.49983 * 23 22 21 40 40 H 1.08997 * 109.54725 * 303.69309 * 23 22 21 41 41 H 1.08004 * 120.07063 * 359.94866 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 1.2846 2.7465 -0.0006 5 1 3.1034 1.6965 1.2125 6 1 3.1033 1.6964 -1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 -0.1072 11 6 1.4356 -4.7356 -0.2196 12 6 2.1829 -5.8916 -0.3331 13 6 3.5635 -5.8290 -0.3245 14 6 4.2038 -4.6017 -0.2071 15 7 5.6016 -4.5391 -0.1990 16 6 6.3189 -5.3951 -0.9535 17 8 5.7576 -6.2720 -1.5755 18 6 7.8184 -5.2626 -1.0242 19 1 8.1044 -4.2339 -0.8050 20 6 8.3003 -5.6404 -2.4267 21 6 9.8073 -5.4268 -2.5355 22 6 10.5587 -6.4582 -1.6990 23 6 10.3468 -6.1783 -0.2094 24 16 8.5851 -6.3780 0.1877 25 8 8.3498 -5.8640 1.4914 26 8 8.2006 -7.7121 -0.1154 27 6 3.4558 -3.4382 -0.0983 28 1 -0.4850 0.8401 0.0004 29 1 0.3568 -4.7882 -0.2226 30 1 1.6874 -6.8469 -0.4245 31 1 4.1451 -6.7350 -0.4095 32 1 6.0544 -3.8795 0.3495 33 1 8.0686 -6.6880 -2.6188 34 1 7.7939 -5.0169 -3.1634 35 1 10.1091 -5.5215 -3.5786 36 1 10.0548 -4.4266 -2.1799 37 1 10.1880 -7.4556 -1.9359 38 1 11.6227 -6.4052 -1.9293 39 1 10.9358 -6.8802 0.3810 40 1 10.6586 -5.1589 0.0180 41 1 3.9512 -2.4828 -0.0072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168438837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:22 Heat of formation + Delta-G solvation = -102.499167 kcal Electronic energy + Delta-G solvation = -27173.545872 eV Core-core repulsion = 23146.818415 eV Total energy + Delta-G solvation = -4026.727458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50866 -38.83061 -37.76767 -37.02286 -36.45815 -36.33886 -34.39616 -32.55853 -32.22525 -29.63020 -28.89503 -28.02531 -25.37718 -24.64523 -22.26589 -21.85349 -21.48484 -20.35483 -19.25932 -18.26501 -17.97142 -17.27088 -17.15174 -16.78225 -15.98836 -15.79819 -15.26949 -15.08716 -14.79336 -14.62297 -14.40713 -14.18746 -13.96386 -13.78100 -13.59905 -13.45761 -13.01270 -12.48923 -12.45495 -12.37567 -12.31342 -12.04793 -11.91930 -11.78510 -11.58907 -11.45198 -11.24443 -11.06718 -11.01390 -10.83774 -10.67105 -10.50359 -9.98817 -9.68964 -9.46621 -8.83569 -7.81539 -7.21171 -6.47162 -4.07304 -0.55038 1.85657 2.15866 2.33444 2.55954 2.80803 3.09484 3.11012 3.13910 3.33456 3.48700 3.92085 3.93388 4.02251 4.11747 4.23306 4.40282 4.51029 4.59219 4.72607 4.89986 5.00404 5.06117 5.26437 5.27424 5.30249 5.45386 5.55522 5.67319 5.73919 5.96232 5.98359 6.16474 6.23034 6.58545 6.86633 6.91650 7.06953 7.27697 7.38432 7.52476 7.74004 7.96129 8.05028 8.97835 9.67639 10.70734 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015835 B = 0.002955 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.770019 B = 9474.756965 C =10428.915412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.394 4.394 8 H 0.090 0.910 9 O -0.175 6.175 10 C 0.167 3.833 11 C -0.195 4.195 12 C -0.063 4.063 13 C -0.205 4.205 14 C 0.172 3.828 15 N -0.659 5.659 16 C 0.525 3.475 17 O -0.490 6.490 18 C -0.599 4.599 19 H 0.156 0.844 20 C -0.094 4.094 21 C -0.140 4.140 22 C -0.113 4.113 23 C -0.601 4.601 24 S 2.422 3.578 25 O -0.927 6.927 26 O -0.911 6.911 27 C -0.252 4.252 28 H 0.271 0.729 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.410 0.590 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.270 -8.872 -3.121 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.470 4.470 8 H 0.107 0.893 9 O -0.078 6.078 10 C 0.113 3.887 11 C -0.215 4.215 12 C -0.082 4.082 13 C -0.226 4.226 14 C 0.080 3.920 15 N -0.304 5.304 16 C 0.309 3.691 17 O -0.363 6.363 18 C -0.708 4.708 19 H 0.174 0.826 20 C -0.132 4.132 21 C -0.178 4.178 22 C -0.151 4.151 23 C -0.731 4.731 24 S 2.601 3.399 25 O -0.924 6.924 26 O -0.908 6.908 27 C -0.274 4.274 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.246 0.754 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 22.040 -9.787 -2.929 24.292 hybrid contribution 1.222 1.985 -0.198 2.340 sum 23.261 -7.802 -3.128 24.734 Atomic orbital electron populations 1.70028 1.05939 1.27804 1.45875 1.25276 0.95834 0.98781 0.96526 0.85798 0.78738 0.79886 0.79077 1.20228 1.19498 1.19594 1.21228 0.91651 0.80881 1.53281 0.89279 1.84013 1.33911 1.11309 1.78569 1.19053 0.89321 0.88235 0.92086 1.20298 0.99840 0.90253 1.11077 1.20567 0.92995 0.97043 0.97613 1.20727 0.94571 0.96179 1.11135 1.17403 0.80185 0.94071 1.00355 1.43419 1.06032 1.36010 1.44907 1.19190 0.86643 0.82842 0.80458 1.90780 1.70592 1.32201 1.42692 1.30489 1.04326 1.19093 1.16931 0.82619 1.21241 0.95409 1.05158 0.91400 1.21741 0.93770 0.99869 1.02381 1.21343 1.03468 1.00949 0.89386 1.30261 1.24168 1.12068 1.06587 1.08322 0.79108 0.76665 0.75849 1.93635 1.84142 1.81161 1.33484 1.93633 1.80715 1.31747 1.84746 1.20805 0.94008 0.97040 1.15543 0.91924 0.86221 0.86367 0.85682 0.75373 0.88398 0.88911 0.89053 0.90473 0.89362 0.89173 0.84354 0.84564 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.08 13.67 55.48 0.76 -24.32 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.86 9.49 30.88 0.29 -10.57 16 8 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 9 O -0.17 -4.95 9.76 0.03 0.00 -4.95 16 10 C 0.17 4.06 6.65 -39.14 -0.26 3.80 16 11 C -0.19 -4.21 9.99 -39.36 -0.39 -4.60 16 12 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 13 C -0.21 -4.08 8.70 -39.34 -0.34 -4.42 16 14 C 0.17 3.37 6.29 -83.72 -0.53 2.84 16 15 N -0.66 -10.25 5.33 -9.88 -0.05 -10.30 16 16 C 0.53 7.75 6.67 -10.99 -0.07 7.68 16 17 O -0.49 -8.85 13.78 5.55 0.08 -8.78 16 18 C -0.60 -5.53 2.80 -27.87 -0.08 -5.60 16 19 H 0.16 0.81 8.13 -51.93 -0.42 0.39 16 20 C -0.09 -0.72 4.62 -26.92 -0.12 -0.84 16 21 C -0.14 -0.59 5.63 -27.15 -0.15 -0.75 16 22 C -0.11 -0.47 5.73 -26.92 -0.15 -0.63 16 23 C -0.60 -2.80 6.34 37.18 0.24 -2.56 16 24 S 2.42 23.50 4.67 -107.50 -0.50 23.00 16 25 O -0.93 -11.79 18.11 -57.81 -1.05 -12.84 16 26 O -0.91 -12.33 17.94 -57.81 -1.04 -13.37 16 27 C -0.25 -5.47 9.08 -39.21 -0.36 -5.83 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 30 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.13 2.45 6.22 -52.49 -0.33 2.13 16 32 H 0.41 5.03 8.82 -40.82 -0.36 4.67 16 33 H 0.10 0.87 7.85 -51.93 -0.41 0.46 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 37 H 0.09 0.41 8.02 -51.92 -0.42 0.00 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.13 2.74 5.63 -52.48 -0.30 2.44 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -37.91 354.76 -8.92 -46.83 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.02 Total: 6.37 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -2.43 Total: -22.10 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.71 Total: -34.62 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -2.01 Total: -39.93 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 23.50 SS G_CDS: -0.50 Total: 23.00 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.91 -8.92 -46.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168438837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.667 kcal (2) G-P(sol) polarization free energy of solvation -37.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds