Wall clock time and date at job start Tue Mar 31 2020 22:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99793 * 2 1 4 4 H 1.48501 * 109.46794 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46953 * 300.00106 * 3 2 1 6 6 H 1.48495 * 109.47204 * 60.00139 * 3 2 1 7 7 C 1.37884 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99404 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99759 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46697 * 179.97438 * 9 7 2 11 11 S 1.65598 * 119.99782 * 164.99669 * 10 9 7 12 12 O 1.42100 * 106.40353 * 311.45846 * 11 10 9 13 13 O 1.42108 * 106.40208 * 178.54229 * 11 10 9 14 14 C 1.76201 * 107.22049 * 65.00065 * 11 10 9 15 15 C 1.38372 * 119.84587 * 89.99715 * 14 11 10 16 16 C 1.37938 * 120.14820 * 179.97438 * 15 14 11 17 17 C 1.39636 * 119.84900 * 0.02772 * 16 15 14 18 18 C 1.47722 * 120.14973 * 179.97438 * 17 16 15 19 19 O 1.21469 * 120.00138 * 359.97438 * 18 17 16 20 20 O 1.34708 * 119.99808 * 179.97438 * 18 17 16 21 21 C 1.45206 * 116.99941 * 179.97438 * 20 18 17 22 22 C 1.53786 * 113.61338 * 249.13604 * 21 20 18 23 23 C 1.53962 * 87.01719 * 220.04790 * 22 21 20 24 24 C 1.53781 * 113.61383 * 151.52870 * 21 20 18 25 25 C 1.39630 * 119.69633 * 0.24696 * 17 16 15 26 26 C 1.37936 * 119.85022 * 359.47435 * 25 17 16 27 27 H 0.96990 * 119.99986 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47572 * 59.99875 * 9 7 2 29 29 H 1.09000 * 109.46885 * 299.99359 * 9 7 2 30 30 H 0.96999 * 120.00660 * 345.00176 * 10 9 7 31 31 H 1.07994 * 119.92513 * 359.97438 * 15 14 11 32 32 H 1.07998 * 120.07874 * 179.97438 * 16 15 14 33 33 H 1.09002 * 112.84946 * 20.33361 * 21 20 18 34 34 H 1.08993 * 113.61491 * 334.56911 * 22 21 20 35 35 H 1.09000 * 113.61138 * 105.47249 * 22 21 20 36 36 H 1.08997 * 113.53543 * 270.80998 * 23 22 21 37 37 H 1.08994 * 113.66446 * 139.93200 * 23 22 21 38 38 H 1.09001 * 113.61695 * 254.52938 * 24 21 20 39 39 H 1.09002 * 113.61213 * 25.34998 * 24 21 20 40 40 H 1.08001 * 120.06864 * 179.72766 * 25 17 16 41 41 H 1.08001 * 119.92708 * 180.27361 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 16 1.6883 -5.1421 0.3718 12 8 0.9254 -5.0301 1.5654 13 8 2.8240 -5.9880 0.2519 14 6 0.5647 -5.6356 -0.8925 15 6 1.0372 -6.2884 -2.0174 16 6 0.1630 -6.6779 -3.0108 17 6 -1.2015 -6.4116 -2.8795 18 6 -2.1435 -6.8253 -3.9395 19 8 -1.7317 -7.3981 -4.9283 20 8 -3.4592 -6.5673 -3.8095 21 6 -4.3261 -7.0020 -4.8902 22 6 -4.9234 -5.8426 -5.7051 23 6 -6.2365 -6.6460 -5.7345 24 6 -5.7606 -7.3228 -4.4382 25 6 -1.6706 -5.7474 -1.7444 26 6 -0.7861 -5.3686 -0.7560 27 1 -0.4849 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 3.1351 -3.4541 -0.2168 31 1 2.0927 -6.4933 -2.1178 32 1 0.5330 -7.1869 -3.8884 33 1 -3.8774 -7.7822 -5.5051 34 1 -4.9954 -4.9088 -5.1477 35 1 -4.4653 -5.7170 -6.6861 36 1 -6.3105 -7.3281 -6.5815 37 1 -7.1279 -6.0323 -5.6049 38 1 -5.9774 -8.3902 -4.3980 39 1 -6.0613 -6.7953 -3.5329 40 1 -2.7241 -5.5345 -1.6388 41 1 -1.1482 -4.8587 0.1245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176945236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:35 Heat of formation + Delta-G solvation = -135.688142 kcal Electronic energy + Delta-G solvation = -26386.633199 eV Core-core repulsion = 22358.466559 eV Total energy + Delta-G solvation = -4028.166640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.92737 -40.23280 -39.05815 -38.33377 -36.96197 -36.87138 -36.47774 -34.12546 -32.94019 -32.30687 -28.72551 -27.20143 -26.69845 -25.29443 -24.51709 -23.95617 -22.36367 -20.76672 -20.63043 -19.52039 -19.25332 -18.83864 -18.12047 -17.70240 -17.24855 -17.21205 -16.63342 -16.30489 -16.15141 -15.83650 -15.55884 -15.22974 -14.73096 -14.66283 -14.36946 -14.28999 -14.08366 -13.81282 -13.57806 -13.47589 -13.33801 -13.23685 -13.14083 -12.78540 -12.60478 -12.51006 -12.45198 -12.21336 -12.15652 -12.07587 -11.70918 -11.47791 -11.39009 -11.17056 -10.86624 -10.69391 -10.26607 -10.12176 -8.23962 -6.35079 -1.01074 -0.55025 0.10403 1.08463 1.42291 1.45070 1.46970 1.58598 2.06150 2.36704 2.43838 2.74751 3.11502 3.25805 3.32342 3.47446 3.51143 3.66386 3.71912 3.79782 3.82781 4.08489 4.17543 4.33823 4.39081 4.60282 4.70291 4.73774 4.76443 4.77769 4.85385 4.92218 4.96810 4.97629 5.03637 5.12491 5.29014 5.32559 5.48212 5.51412 5.75999 5.98511 6.31657 6.46774 6.79041 7.34432 8.87166 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.002976 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.988875 B = 9407.304041 C =11178.247983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.256 3.744 10 N -1.100 6.100 11 S 2.709 3.291 12 O -0.987 6.987 13 O -0.979 6.979 14 C -0.647 4.647 15 C -0.033 4.033 16 C -0.078 4.078 17 C -0.087 4.087 18 C 0.514 3.486 19 O -0.522 6.522 20 O -0.339 6.339 21 C 0.038 3.962 22 C -0.155 4.155 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.078 4.078 26 C -0.041 4.041 27 H 0.268 0.732 28 H 0.014 0.986 29 H 0.017 0.983 30 H 0.420 0.580 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.167 0.833 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -13.815 -10.414 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.092 0.908 9 C 0.132 3.868 10 N -0.862 5.862 11 S 2.799 3.201 12 O -0.977 6.977 13 O -0.969 6.969 14 C -0.734 4.734 15 C -0.052 4.052 16 C -0.097 4.097 17 C -0.089 4.089 18 C 0.359 3.641 19 O -0.412 6.412 20 O -0.255 6.255 21 C -0.016 4.016 22 C -0.192 4.192 23 C -0.164 4.164 24 C -0.164 4.164 25 C -0.096 4.096 26 C -0.060 4.060 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.035 0.965 30 H 0.256 0.744 31 H 0.187 0.813 32 H 0.180 0.820 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.184 0.816 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.653 -14.403 -9.957 19.995 hybrid contribution 0.310 1.065 -0.712 1.318 sum -9.344 -13.338 -10.669 19.469 Atomic orbital electron populations 1.70042 1.07504 1.28286 1.50442 1.25841 0.95816 1.03026 0.94375 0.85333 0.79059 0.78557 0.77658 1.18583 1.20395 1.20647 1.21650 0.94191 0.90938 1.51973 0.90754 1.18728 0.88006 0.84282 0.95829 1.55257 1.19695 1.23388 1.87884 1.01197 0.72947 0.72130 0.73819 1.93539 1.73180 1.86523 1.44462 1.93529 1.49841 1.66201 1.87366 1.31251 1.11311 1.12920 1.17933 1.21147 1.01821 0.92137 0.90046 1.21562 0.90934 0.97553 0.99617 1.19584 0.93260 1.01732 0.94289 1.21162 0.82594 0.75237 0.85095 1.90799 1.78941 1.39991 1.31497 1.86671 1.17334 1.73491 1.48040 1.25082 0.88892 0.99422 0.88156 1.23523 0.97414 0.98067 1.00239 1.22681 0.96930 0.99224 0.97564 1.23270 0.90436 1.02888 0.99803 1.21751 1.01884 0.94623 0.91385 1.21171 0.91255 0.94344 0.99213 0.92284 0.96771 0.96518 0.74398 0.81319 0.81972 0.87606 0.89064 0.90631 0.88351 0.88738 0.89170 0.88393 0.81552 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.69 13.29 21.45 0.28 -51.41 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.97 41.44 29.54 68.60 2.03 43.47 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -28.48 9.27 25.60 0.24 -28.25 16 8 H 0.07 3.65 7.65 -2.91 -0.02 3.63 16 9 C 0.26 12.28 5.98 85.63 0.51 12.79 16 10 N -1.10 -42.26 5.99 -190.80 -1.14 -43.40 16 11 S 2.71 95.03 5.73 -56.49 -0.32 94.70 16 12 O -0.99 -40.70 16.74 -128.00 -2.14 -42.85 16 13 O -0.98 -34.92 17.27 -128.00 -2.21 -37.13 16 14 C -0.65 -19.93 5.95 22.33 0.13 -19.80 16 15 C -0.03 -0.86 9.50 22.23 0.21 -0.65 16 16 C -0.08 -1.95 9.60 22.54 0.22 -1.73 16 17 C -0.09 -2.29 5.87 -20.10 -0.12 -2.40 16 18 C 0.51 13.38 7.90 70.33 0.56 13.93 16 19 O -0.52 -15.22 15.58 19.94 0.31 -14.91 16 20 O -0.34 -7.74 9.49 -56.18 -0.53 -8.28 16 21 C 0.04 0.69 4.23 31.12 0.13 0.82 16 22 C -0.15 -2.33 7.94 31.18 0.25 -2.08 16 23 C -0.13 -1.26 8.09 31.18 0.25 -1.01 16 24 C -0.13 -1.54 7.92 31.12 0.25 -1.30 16 25 C -0.08 -2.02 9.62 22.53 0.22 -1.80 16 26 C -0.04 -1.22 9.50 22.23 0.21 -1.01 16 27 H 0.27 14.09 8.31 -92.72 -0.77 13.32 16 28 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.02 0.88 7.75 -2.39 -0.02 0.86 16 30 H 0.42 14.48 8.54 -96.75 -0.83 13.66 16 31 H 0.17 3.72 7.60 -2.91 -0.02 3.69 16 32 H 0.16 3.44 7.65 -2.91 -0.02 3.41 16 33 H 0.11 2.01 7.11 -2.39 -0.02 2.00 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.17 3.53 7.61 -2.91 -0.02 3.51 16 41 H 0.15 4.50 7.60 -2.91 -0.02 4.47 16 Total: -1.00 -68.11 368.59 0.03 -68.09 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.24 Total: 23.21 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 3.52 Total: -31.50 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -0.86 Total: -94.81 kcal Atomic # 8 Polarization: -98.59 SS G_CDS: -4.58 Total: -103.16 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 95.03 SS G_CDS: -0.32 Total: 94.70 kcal Total: -68.11 0.03 -68.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176945236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.601 kcal (2) G-P(sol) polarization free energy of solvation -68.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds