Wall clock time and date at job start Tue Mar 31 2020 21:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48495 * 109.47122 * 270.00026 * 3 2 1 5 5 H 1.48503 * 109.47228 * 30.00421 * 3 2 1 6 6 H 1.48503 * 109.46783 * 150.00019 * 3 2 1 7 7 C 1.37873 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00017 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00139 * 180.02562 * 7 2 1 10 10 C 1.53011 * 109.47366 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47407 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.53899 * 68.37144 * 11 10 9 13 13 O 1.42104 * 110.54073 * 291.62698 * 11 10 9 14 14 N 1.65598 * 104.44706 * 180.02562 * 11 10 9 15 15 C 1.34771 * 120.00143 * 64.99962 * 14 11 10 16 16 O 1.21277 * 120.00278 * 5.02043 * 15 14 11 17 17 C 1.50703 * 119.99780 * 185.01844 * 15 14 11 18 18 H 1.09005 * 109.33781 * 128.92816 * 17 15 14 19 19 O 1.42723 * 109.34280 * 9.40893 * 17 15 14 20 20 C 1.43184 * 113.07117 * 187.92523 * 19 17 15 21 21 C 1.52958 * 108.50941 * 70.74966 * 20 19 17 22 22 C 1.50749 * 109.72009 * 310.73830 * 21 20 19 23 23 C 1.38600 * 118.76981 * 197.00448 * 22 21 20 24 24 C 1.38057 * 120.27945 * 180.18906 * 23 22 21 25 25 C 1.38269 * 119.86339 * 0.04111 * 24 23 22 26 26 C 1.38048 * 119.89429 * 359.89832 * 25 24 23 27 27 C 1.37904 * 121.34838 * 17.04928 * 22 21 20 28 28 H 0.96998 * 119.99733 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47374 * 59.99646 * 9 7 2 30 30 H 1.09000 * 109.47400 * 299.99453 * 9 7 2 31 31 H 1.09004 * 109.46787 * 59.99313 * 10 9 7 32 32 H 1.09000 * 109.46596 * 300.00168 * 10 9 7 33 33 H 0.96998 * 119.99317 * 244.99864 * 14 11 10 34 34 H 1.09006 * 109.67273 * 311.01147 * 20 19 17 35 35 H 1.08997 * 109.57432 * 190.42719 * 20 19 17 36 36 H 1.08995 * 109.42634 * 190.67148 * 21 20 19 37 37 H 1.09000 * 109.42112 * 70.79386 * 21 20 19 38 38 H 1.08007 * 119.86013 * 0.18754 * 23 22 21 39 39 H 1.07998 * 120.07327 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.04950 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.84952 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6365 -0.0001 11 16 5.8357 -2.6364 -0.0001 12 8 6.3343 -2.1460 1.2368 13 8 6.3343 -2.1459 -1.2371 14 7 6.2489 -4.2400 -0.0010 15 6 5.9394 -5.0151 -1.0592 16 8 5.4405 -4.5206 -2.0478 17 6 6.2131 -6.4964 -1.0139 18 1 5.3105 -7.0390 -1.2951 19 8 6.5901 -6.8671 0.3118 20 6 7.0427 -8.2221 0.4082 21 6 8.4056 -8.3288 -0.2780 22 6 8.3396 -7.6905 -1.6421 23 6 9.3328 -7.9822 -2.5637 24 6 9.3052 -7.4120 -3.8208 25 6 8.2828 -6.5456 -4.1615 26 6 7.2925 -6.2556 -3.2445 27 6 7.3177 -6.8295 -1.9826 28 1 -0.4850 0.8400 0.0004 29 1 3.8746 -0.6806 0.8904 30 1 3.8753 -0.6796 -0.8895 31 1 3.6586 -3.1501 -0.8903 32 1 3.6580 -3.1505 0.8897 33 1 6.7137 -4.6214 0.7602 34 1 6.3308 -8.8829 -0.0865 35 1 7.1381 -8.5015 1.4575 36 1 8.6779 -9.3790 -0.3820 37 1 9.1561 -7.8178 0.3253 38 1 10.1318 -8.6583 -2.2974 39 1 10.0806 -7.6419 -4.5365 40 1 8.2584 -6.0976 -5.1438 41 1 6.4945 -5.5785 -3.5112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181267971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:05 Heat of formation + Delta-G solvation = -127.784640 kcal Electronic energy + Delta-G solvation = -27442.692039 eV Core-core repulsion = 23414.868121 eV Total energy + Delta-G solvation = -4027.823918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29705 -39.53113 -38.00885 -36.79635 -35.72931 -34.50520 -33.95661 -33.44563 -32.17251 -31.49462 -29.90838 -26.92195 -26.00068 -24.35183 -23.09451 -21.88641 -21.29533 -20.49832 -19.44683 -18.39136 -17.93149 -17.48916 -17.03042 -16.37125 -16.05256 -15.90199 -15.63354 -15.32089 -15.04251 -15.02541 -14.35890 -14.21219 -14.07142 -13.70835 -13.65547 -13.07212 -13.02219 -12.82576 -12.50127 -12.33732 -12.20234 -11.92472 -11.84606 -11.72912 -11.60000 -11.27215 -11.23176 -11.12063 -10.91304 -10.45258 -10.38237 -10.22152 -10.11693 -9.64014 -9.35083 -9.10154 -8.97664 -8.64989 -6.15264 -4.16708 0.37100 0.90080 1.06418 1.85483 2.59385 2.99536 3.28493 3.35354 3.39237 3.41115 3.89411 4.03975 4.12201 4.25729 4.37153 4.38067 4.51771 4.66047 4.74001 4.78114 4.83863 4.95686 5.02578 5.10213 5.16195 5.29458 5.35955 5.42141 5.48177 5.52250 5.63079 5.77061 6.09424 6.14089 6.24241 6.25004 6.33718 6.62073 6.69136 6.80112 6.93256 7.26960 7.54538 8.37443 8.85687 9.43919 10.97059 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.002967 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.346069 B = 9433.650566 C = 9712.175255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.570 4.570 11 S 2.561 3.439 12 O -0.951 6.951 13 O -0.936 6.936 14 N -1.044 6.044 15 C 0.557 3.443 16 O -0.479 6.479 17 C 0.118 3.882 18 H 0.118 0.882 19 O -0.369 6.369 20 C 0.061 3.939 21 C -0.118 4.118 22 C -0.065 4.065 23 C -0.124 4.124 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.101 4.101 27 C -0.123 4.123 28 H 0.267 0.733 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.437 0.563 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.704 -21.617 -1.920 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.704 4.704 11 S 2.661 3.339 12 O -0.942 6.942 13 O -0.926 6.926 14 N -0.806 5.806 15 C 0.342 3.658 16 O -0.350 6.350 17 C 0.055 3.945 18 H 0.135 0.865 19 O -0.288 6.288 20 C -0.015 4.015 21 C -0.155 4.155 22 C -0.066 4.066 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.139 4.139 26 C -0.119 4.119 27 C -0.124 4.124 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.274 0.726 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 18.828 -20.325 -2.484 27.817 hybrid contribution 0.144 0.088 0.159 0.232 sum 18.971 -20.238 -2.325 27.837 Atomic orbital electron populations 1.69879 1.06193 1.27269 1.49944 1.24970 0.94828 0.99138 0.94099 0.86925 0.80676 0.83668 0.79192 1.19600 1.20727 1.18612 1.20813 0.87581 0.95022 1.52356 0.90296 1.19436 1.00046 0.86953 0.98046 1.30191 1.18590 1.09989 1.11620 1.06815 0.80202 0.72262 0.74647 1.93600 1.79458 1.76178 1.44961 1.93608 1.78369 1.76210 1.44420 1.55237 1.65901 1.32302 1.27154 1.19933 0.75674 0.88480 0.81735 1.90921 1.40433 1.73789 1.29887 1.21042 0.97432 0.92431 0.83606 0.86518 1.87994 1.85283 1.30238 1.25248 1.22727 0.94027 0.82502 1.02260 1.21186 0.99456 1.01554 0.93312 1.19433 0.94324 0.96963 0.95843 1.21020 0.98491 1.01058 0.93641 1.21216 0.98301 0.96649 0.96486 1.21183 0.94549 0.98239 0.99884 1.21591 0.99591 0.98307 0.92362 1.19612 0.96817 1.00386 0.95595 0.92349 0.94804 0.95086 0.84651 0.85214 0.72598 0.91841 0.87286 0.89248 0.89223 0.85754 0.85749 0.85444 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 10 C -0.57 -10.98 5.84 37.16 0.22 -10.76 16 11 S 2.56 45.97 5.12 -107.50 -0.55 45.42 16 12 O -0.95 -18.51 18.08 -57.54 -1.04 -19.55 16 13 O -0.94 -19.80 16.92 -65.16 -1.10 -20.90 16 14 N -1.04 -14.33 5.52 31.22 0.17 -14.16 16 15 C 0.56 7.75 6.60 -10.99 -0.07 7.67 16 16 O -0.48 -7.99 13.05 -12.77 -0.17 -8.16 16 17 C 0.12 1.24 3.22 -29.06 -0.09 1.15 16 18 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 19 O -0.37 -3.34 9.21 -35.23 -0.32 -3.66 16 20 C 0.06 0.36 6.84 37.14 0.25 0.62 16 21 C -0.12 -0.70 6.01 -27.88 -0.17 -0.87 16 22 C -0.07 -0.58 5.78 -104.59 -0.60 -1.18 16 23 C -0.12 -0.99 9.67 -39.51 -0.38 -1.38 16 24 C -0.11 -0.91 10.05 -39.64 -0.40 -1.31 16 25 C -0.12 -1.20 10.05 -39.64 -0.40 -1.59 16 26 C -0.10 -1.18 9.07 -39.50 -0.36 -1.54 16 27 C -0.12 -1.33 5.46 -104.62 -0.57 -1.90 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 30 H 0.03 0.75 7.57 -51.93 -0.39 0.35 16 31 H 0.14 2.54 7.40 -51.92 -0.38 2.16 16 32 H 0.13 2.18 8.14 -51.92 -0.42 1.76 16 33 H 0.44 4.75 7.67 -34.46 -0.26 4.49 16 34 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 35 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.15 1.90 5.84 -52.49 -0.31 1.60 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -36.62 352.77 -9.82 -46.44 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.11 Total: 3.08 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -3.12 Total: -24.35 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.95 Total: -40.64 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -2.63 Total: -52.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: 45.97 SS G_CDS: -0.55 Total: 45.42 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.62 -9.82 -46.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181267971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.346 kcal (2) G-P(sol) polarization free energy of solvation -36.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds