Wall clock time and date at job start Tue Mar 31 2020 22:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48506 * 109.46975 * 240.00094 * 3 2 1 5 5 H 1.48500 * 109.46917 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47542 * 120.00057 * 3 2 1 7 7 C 1.37876 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46945 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.46842 * 180.02562 * 10 9 7 12 12 O 1.42093 * 110.54422 * 68.37442 * 11 10 9 13 13 O 1.42099 * 110.54364 * 291.61926 * 11 10 9 14 14 N 1.65605 * 104.44539 * 179.97438 * 11 10 9 15 15 C 1.34780 * 119.99649 * 65.00076 * 14 11 10 16 16 O 1.21272 * 120.00530 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99402 * 179.97438 * 15 14 11 18 18 C 1.53002 * 109.46981 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47361 * 180.02562 * 18 17 15 20 20 O 1.21250 * 119.99733 * 0.02562 * 19 18 17 21 21 C 1.47164 * 119.99851 * 180.02562 * 19 18 17 22 22 C 1.39855 * 120.16680 * 180.02562 * 21 19 18 23 23 C 1.37890 * 119.82316 * 179.97438 * 22 21 19 24 24 C 1.38404 * 120.17220 * 359.97438 * 23 22 21 25 25 C 1.38409 * 120.34828 * 0.04376 * 24 23 22 26 26 C 1.37888 * 120.17293 * 359.95823 * 25 24 23 27 27 H 0.97001 * 120.00097 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47138 * 60.00366 * 9 7 2 29 29 H 1.08995 * 109.47160 * 299.99114 * 9 7 2 30 30 H 1.08997 * 109.47278 * 59.99745 * 10 9 7 31 31 H 1.09003 * 109.46548 * 300.00011 * 10 9 7 32 32 H 0.97000 * 120.00130 * 244.99382 * 14 11 10 33 33 H 1.09001 * 109.47258 * 60.00050 * 17 15 14 34 34 H 1.08995 * 109.47316 * 300.00069 * 17 15 14 35 35 H 1.09001 * 109.46706 * 60.00174 * 18 17 15 36 36 H 1.08995 * 109.47529 * 300.00401 * 18 17 15 37 37 H 1.07999 * 120.09085 * 359.69867 * 22 21 19 38 38 H 1.08000 * 119.91186 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.82754 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.91489 * 179.97438 * 25 24 23 41 41 H 1.07996 * 120.08508 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 -0.0002 12 8 0.6647 -5.4193 -1.2374 13 8 0.6640 -5.4201 1.2365 14 7 2.5205 -6.3927 -0.0009 15 6 3.3471 -6.5129 1.0569 16 8 3.2254 -5.7717 2.0090 17 6 4.4225 -7.5686 1.0565 18 6 5.2141 -7.4908 2.3636 19 6 6.2900 -8.5460 2.3630 20 8 6.4119 -9.2869 1.4109 21 6 7.1925 -8.6773 3.5179 22 6 8.1925 -9.6550 3.5209 23 6 9.0346 -9.7713 4.6065 24 6 8.8925 -8.9234 5.6911 25 6 7.9051 -7.9535 5.6959 26 6 7.0551 -7.8245 4.6178 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6044 0.8905 31 1 2.8720 -3.6043 -0.8895 32 1 2.6181 -6.9854 -0.7625 33 1 5.0947 -7.4023 0.2147 34 1 3.9647 -8.5537 0.9667 35 1 4.5421 -7.6569 3.2056 36 1 5.6719 -6.5057 2.4530 37 1 8.3021 -10.3200 2.6770 38 1 9.8076 -10.5256 4.6102 39 1 9.5554 -9.0191 6.5383 40 1 7.8002 -7.2958 6.5461 41 1 6.2849 -7.0676 4.6232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181273359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:58 Heat of formation + Delta-G solvation = -162.308368 kcal Electronic energy + Delta-G solvation = -25837.301536 eV Core-core repulsion = 21807.980557 eV Total energy + Delta-G solvation = -4029.320979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49647 -40.77414 -39.11116 -38.27423 -37.20900 -35.94895 -35.58444 -34.16086 -33.16702 -32.23817 -31.84668 -27.72711 -27.48620 -24.54304 -23.65984 -23.34200 -22.30649 -20.79730 -20.46797 -19.34453 -19.03310 -18.36060 -17.99830 -17.49641 -16.89403 -16.78864 -16.57429 -16.53993 -16.32871 -15.85029 -15.62648 -15.19699 -14.97219 -14.84208 -14.48624 -14.37277 -14.13210 -13.84398 -13.74061 -13.41997 -13.35192 -13.24275 -12.92799 -12.91198 -12.83953 -12.58723 -12.31433 -12.23824 -12.19758 -12.01027 -11.97241 -11.74511 -11.39879 -11.05864 -10.77157 -10.64400 -9.93352 -9.92804 -8.26692 -6.40778 -0.98122 -0.31625 0.44526 1.02023 1.40654 1.42696 1.44405 1.44871 1.52606 2.37342 2.58573 2.80217 2.87520 3.06562 3.12548 3.39122 3.64013 3.91595 3.94605 4.05426 4.06408 4.10099 4.11866 4.20055 4.32075 4.49772 4.55420 4.67984 4.70606 4.81668 4.93041 4.96393 5.09665 5.23591 5.24678 5.37771 5.47958 5.53146 5.66456 5.69094 5.97267 6.04242 6.42917 6.47392 6.71725 7.29033 8.85400 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.002356 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.490500 B =11883.979334 C =13421.190855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.578 4.578 11 S 2.600 3.400 12 O -0.974 6.974 13 O -0.978 6.978 14 N -1.038 6.038 15 C 0.535 3.465 16 O -0.527 6.527 17 C -0.126 4.126 18 C -0.159 4.159 19 C 0.408 3.592 20 O -0.481 6.481 21 C -0.192 4.192 22 C -0.078 4.078 23 C -0.140 4.140 24 C -0.088 4.088 25 C -0.141 4.141 26 C -0.077 4.077 27 H 0.268 0.732 28 H 0.014 0.986 29 H 0.005 0.995 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.451 0.549 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.382 -20.830 7.818 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.711 4.711 11 S 2.699 3.301 12 O -0.964 6.964 13 O -0.968 6.968 14 N -0.806 5.806 15 C 0.324 3.676 16 O -0.401 6.401 17 C -0.167 4.167 18 C -0.197 4.197 19 C 0.288 3.712 20 O -0.359 6.359 21 C -0.193 4.193 22 C -0.096 4.096 23 C -0.158 4.158 24 C -0.106 4.106 25 C -0.158 4.158 26 C -0.095 4.095 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.024 0.976 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.291 0.709 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 19.261 -20.811 8.012 29.466 hybrid contribution 0.329 0.964 -0.415 1.100 sum 19.590 -19.847 7.597 28.903 Atomic orbital electron populations 1.70091 1.08014 1.28444 1.50664 1.26125 0.95913 1.03890 0.94323 0.85347 0.78139 0.77214 0.79453 1.18606 1.20871 1.18943 1.21447 0.93936 0.90705 1.51817 0.90718 1.18826 0.93488 0.92766 0.96597 1.30235 1.12824 1.15513 1.12530 1.05344 0.74796 0.76886 0.73061 1.93560 1.71628 1.85544 1.45691 1.93545 1.71885 1.84933 1.46438 1.54876 1.48144 1.49367 1.28169 1.21325 0.81584 0.84922 0.79791 1.90906 1.70514 1.44875 1.33765 1.21666 0.95488 0.98274 1.01311 1.21914 0.97507 1.00828 0.99426 1.22562 0.82336 0.81829 0.84441 1.90514 1.68582 1.41333 1.35441 1.20565 1.00386 1.00929 0.97388 1.21579 0.93253 0.96053 0.98735 1.21459 1.00106 1.00720 0.93506 1.21834 0.96937 0.93379 0.98455 1.21540 0.95661 0.99453 0.99178 1.21795 0.98520 0.97097 0.92064 0.92330 0.96812 0.97633 0.84449 0.83149 0.70881 0.84866 0.85466 0.86475 0.86131 0.85346 0.83461 0.83083 0.83331 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 1.17 4.98 29.85 0.15 1.32 16 10 C -0.58 -22.36 5.82 71.99 0.42 -21.94 16 11 S 2.60 91.66 5.11 -56.49 -0.29 91.37 16 12 O -0.97 -37.84 18.08 -127.65 -2.31 -40.15 16 13 O -0.98 -42.59 17.04 -120.72 -2.06 -44.65 16 14 N -1.04 -23.13 5.60 -173.53 -0.97 -24.11 16 15 C 0.54 12.02 7.57 87.66 0.66 12.68 16 16 O -0.53 -16.14 14.09 13.35 0.19 -15.95 16 17 C -0.13 -1.78 4.99 29.85 0.15 -1.63 16 18 C -0.16 -2.28 3.60 29.85 0.11 -2.17 16 19 C 0.41 6.72 7.12 28.03 0.20 6.92 16 20 O -0.48 -10.07 15.98 -2.94 -0.05 -10.11 16 21 C -0.19 -2.98 5.87 -20.15 -0.12 -3.10 16 22 C -0.08 -1.15 9.60 22.58 0.22 -0.93 16 23 C -0.14 -1.51 10.03 22.23 0.22 -1.29 16 24 C -0.09 -0.81 10.04 22.35 0.22 -0.59 16 25 C -0.14 -1.46 10.03 22.23 0.22 -1.23 16 26 C -0.08 -0.97 9.47 22.58 0.21 -0.76 16 27 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.14 5.14 7.19 -2.39 -0.02 5.12 16 31 H 0.15 4.82 8.14 -2.39 -0.02 4.80 16 32 H 0.45 6.02 8.79 -96.74 -0.85 5.17 16 33 H 0.13 1.36 8.10 -2.39 -0.02 1.34 16 34 H 0.13 1.43 8.10 -2.39 -0.02 1.41 16 35 H 0.12 1.61 8.04 -2.39 -0.02 1.59 16 36 H 0.12 1.58 8.05 -2.39 -0.02 1.56 16 37 H 0.13 1.90 7.65 -2.91 -0.02 1.88 16 38 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.15 0.59 8.06 -2.91 -0.02 0.56 16 40 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 41 H 0.15 1.47 7.05 -2.91 -0.02 1.45 16 Total: -1.00 -84.12 371.34 0.40 -83.72 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.21 Total: 13.50 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 3.36 Total: -42.46 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -0.69 Total: -80.75 kcal Atomic # 8 Polarization: -106.64 SS G_CDS: -4.22 Total: -110.86 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 91.66 SS G_CDS: -0.29 Total: 91.37 kcal Total: -84.12 0.40 -83.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181273359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.590 kcal (2) G-P(sol) polarization free energy of solvation -84.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds