Wall clock time and date at job start Tue Mar 31 2020 21:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48494 * 109.46992 * 270.00031 * 3 2 1 5 5 H 1.48501 * 109.46857 * 30.00243 * 3 2 1 6 6 H 1.48491 * 109.46879 * 150.00069 * 3 2 1 7 7 C 1.37881 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47154 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47229 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.53973 * 68.37511 * 11 10 9 13 13 O 1.42102 * 110.54503 * 291.62829 * 11 10 9 14 14 N 1.65601 * 104.44884 * 179.97438 * 11 10 9 15 15 C 1.34779 * 119.99693 * 65.00345 * 14 11 10 16 16 O 1.21280 * 119.99832 * 354.95152 * 15 14 11 17 17 C 1.50697 * 119.99513 * 175.22596 * 15 14 11 18 18 H 1.08998 * 109.44027 * 335.74737 * 17 15 14 19 19 C 1.53073 * 109.43606 * 215.82701 * 17 15 14 20 20 C 1.53409 * 108.29402 * 191.74798 * 19 17 15 21 21 O 1.42831 * 108.36870 * 64.75216 * 20 19 17 22 22 C 1.35844 * 117.86088 * 310.85094 * 21 20 19 23 23 C 1.39150 * 118.50033 * 197.02491 * 22 21 20 24 24 C 1.37962 * 120.21705 * 180.17940 * 23 22 21 25 25 C 1.38285 * 119.96219 * 0.02562 * 24 23 22 26 26 C 1.38104 * 119.97984 * 359.91961 * 25 24 23 27 27 C 1.38311 * 121.79259 * 17.10949 * 22 21 20 28 28 H 0.97004 * 119.99875 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47373 * 60.00097 * 9 7 2 30 30 H 1.08997 * 109.47623 * 300.00344 * 9 7 2 31 31 H 1.08996 * 109.46689 * 60.00291 * 10 9 7 32 32 H 1.08997 * 109.46565 * 300.00334 * 10 9 7 33 33 H 0.96993 * 120.00058 * 245.00150 * 14 11 10 34 34 H 1.08996 * 109.70307 * 311.45471 * 19 17 15 35 35 H 1.09001 * 109.69564 * 72.05082 * 19 17 15 36 36 H 1.09001 * 109.68562 * 184.46749 * 20 19 17 37 37 H 1.08995 * 109.68651 * 304.99296 * 20 19 17 38 38 H 1.07998 * 119.88567 * 0.15130 * 23 22 21 39 39 H 1.08005 * 120.01724 * 180.02562 * 24 23 22 40 40 H 1.07992 * 120.01366 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.84284 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2330 -0.0013 12 8 0.6647 -5.4193 -1.2386 13 8 0.6637 -5.4200 1.2354 14 7 2.5204 -6.3927 -0.0020 15 6 3.3469 -6.5130 1.0559 16 8 3.2854 -5.7153 1.9673 17 6 4.3516 -7.6352 1.1032 18 1 4.0070 -8.4573 0.4759 19 6 4.5020 -8.1238 2.5460 20 6 5.7256 -9.0463 2.6170 21 8 6.8902 -8.2726 2.3251 22 6 6.8666 -7.4817 1.2208 23 6 8.0743 -7.0084 0.7172 24 6 8.0913 -6.1996 -0.4004 25 6 6.9050 -5.8569 -1.0229 26 6 5.7046 -6.3258 -0.5266 27 6 5.6817 -7.1396 0.5948 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8718 -3.6044 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 2.6180 -6.9853 -0.7635 34 1 4.6456 -7.2711 3.2096 35 1 3.6091 -8.6743 2.8424 36 1 5.8081 -9.4706 3.6176 37 1 5.6240 -9.8480 1.8855 38 1 9.0013 -7.2747 1.2031 39 1 9.0306 -5.8344 -0.7888 40 1 6.9173 -5.2235 -1.8976 41 1 4.7794 -6.0570 -1.0148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181285750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:25 Heat of formation + Delta-G solvation = -129.949671 kcal Electronic energy + Delta-G solvation = -27580.525715 eV Core-core repulsion = 23552.607914 eV Total energy + Delta-G solvation = -4027.917801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48148 -39.75600 -37.79564 -36.77915 -35.69116 -34.78582 -34.34541 -33.91008 -31.19972 -30.98296 -30.52023 -27.04733 -25.63012 -24.20601 -23.17903 -22.04793 -21.62442 -20.26083 -19.40592 -18.48463 -17.85836 -17.55193 -17.01227 -16.56491 -16.46634 -15.71237 -15.33008 -15.20739 -14.95915 -14.75448 -14.53921 -14.39981 -14.09088 -13.71930 -13.58658 -13.42428 -12.84642 -12.55501 -12.39674 -12.30210 -11.85469 -11.83132 -11.78239 -11.68710 -11.44707 -11.26330 -11.09830 -11.04766 -10.99775 -10.90025 -10.45109 -10.37838 -10.26021 -9.72269 -9.20481 -9.12236 -8.50208 -8.45970 -6.12558 -4.17937 0.42868 0.96239 1.14700 1.93816 2.62468 2.95881 3.26994 3.33256 3.36884 3.42700 3.87262 4.01017 4.16213 4.20634 4.35972 4.37423 4.55600 4.69976 4.73114 4.81041 4.83386 4.89386 5.10073 5.13820 5.17393 5.21317 5.22863 5.50056 5.56102 5.66218 5.70840 5.76252 5.96782 6.10120 6.25765 6.42856 6.46687 6.53420 7.11235 7.26516 7.32856 7.33906 7.80700 8.16061 8.85016 9.46698 10.98576 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003559 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.815871 B = 7864.562978 C = 9101.902371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.574 4.574 11 S 2.562 3.438 12 O -0.953 6.953 13 O -0.939 6.939 14 N -1.060 6.060 15 C 0.546 3.454 16 O -0.478 6.478 17 C -0.062 4.062 18 H 0.110 0.890 19 C -0.153 4.153 20 C 0.066 3.934 21 O -0.314 6.314 22 C 0.145 3.855 23 C -0.148 4.148 24 C -0.080 4.080 25 C -0.145 4.145 26 C -0.085 4.085 27 C -0.156 4.156 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.429 0.571 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.067 0.933 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.143 -20.550 -0.486 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.709 4.709 11 S 2.663 3.337 12 O -0.943 6.943 13 O -0.929 6.929 14 N -0.821 5.821 15 C 0.331 3.669 16 O -0.348 6.348 17 C -0.085 4.085 18 H 0.128 0.872 19 C -0.191 4.191 20 C -0.010 4.010 21 O -0.228 6.228 22 C 0.100 3.900 23 C -0.167 4.167 24 C -0.099 4.099 25 C -0.163 4.163 26 C -0.104 4.104 27 C -0.157 4.157 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.264 0.736 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.130 -20.133 0.375 24.599 hybrid contribution 0.677 0.869 -0.608 1.259 sum 14.807 -19.263 -0.233 24.298 Atomic orbital electron populations 1.69955 1.06118 1.27237 1.49561 1.25059 0.94984 0.99538 0.94839 0.86448 0.79778 0.82748 0.78216 1.20445 1.20967 1.19696 1.20968 0.93114 0.89525 1.52193 0.91941 1.18995 0.92596 0.90342 0.98998 1.30343 1.13680 1.15941 1.10923 1.06837 0.75022 0.77357 0.74533 1.93594 1.70518 1.85280 1.44937 1.93595 1.70278 1.84428 1.44606 1.55558 1.49204 1.50709 1.26615 1.20220 0.80015 0.86082 0.80567 1.90907 1.67215 1.41417 1.35241 1.20248 0.91795 0.96767 0.99644 0.87199 1.22272 0.99944 1.02013 0.94908 1.22995 0.83001 0.92190 1.02767 1.86007 1.39936 1.55711 1.41124 1.18580 0.92877 0.92068 0.86516 1.20613 0.96053 1.02012 0.98015 1.21007 0.98598 0.95889 0.94361 1.21070 0.92093 1.01702 1.01456 1.21023 0.98936 0.95735 0.94658 1.19266 0.92293 1.04744 0.99410 0.92504 0.94760 0.94609 0.84867 0.86039 0.73605 0.88192 0.88746 0.86770 0.91433 0.84952 0.85090 0.85247 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 10 C -0.57 -11.47 5.80 37.16 0.22 -11.26 16 11 S 2.56 46.29 5.10 -107.50 -0.55 45.74 16 12 O -0.95 -18.60 18.08 -57.54 -1.04 -19.64 16 13 O -0.94 -20.40 17.16 -64.27 -1.10 -21.51 16 14 N -1.06 -13.25 4.90 31.22 0.15 -13.10 16 15 C 0.55 7.32 5.52 -10.99 -0.06 7.26 16 16 O -0.48 -8.37 14.08 -9.81 -0.14 -8.51 16 17 C -0.06 -0.60 2.70 -92.85 -0.25 -0.85 16 18 H 0.11 0.70 8.12 -51.93 -0.42 0.28 16 19 C -0.15 -1.36 5.35 -26.48 -0.14 -1.50 16 20 C 0.07 0.46 7.03 37.37 0.26 0.72 16 21 O -0.31 -3.18 10.27 -19.25 -0.20 -3.38 16 22 C 0.14 1.56 6.47 -39.22 -0.25 1.31 16 23 C -0.15 -1.42 9.94 -39.34 -0.39 -1.82 16 24 C -0.08 -0.71 10.04 -39.67 -0.40 -1.11 16 25 C -0.15 -1.39 10.04 -39.61 -0.40 -1.78 16 26 C -0.09 -0.89 9.10 -39.51 -0.36 -1.25 16 27 C -0.16 -1.67 5.42 -104.44 -0.57 -2.24 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.13 2.67 7.00 -51.93 -0.36 2.30 16 32 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 33 H 0.43 3.47 8.75 -34.47 -0.30 3.17 16 34 H 0.10 1.13 7.47 -51.93 -0.39 0.74 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.15 6.78 -52.48 -0.36 0.79 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -37.83 357.90 -9.83 -47.66 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.18 Total: 1.96 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -2.89 Total: -25.16 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.89 Total: -39.00 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -2.48 Total: -53.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 46.29 SS G_CDS: -0.55 Total: 45.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.83 -9.83 -47.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181285750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.286 kcal (2) G-P(sol) polarization free energy of solvation -37.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds