Wall clock time and date at job start Tue Mar 31 2020 21:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48494 * 109.46992 * 270.00031 * 3 2 1 5 5 H 1.48501 * 109.46857 * 30.00243 * 3 2 1 6 6 H 1.48491 * 109.46879 * 150.00069 * 3 2 1 7 7 C 1.37881 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47154 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47229 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.53973 * 68.37511 * 11 10 9 13 13 O 1.42102 * 110.54503 * 291.62829 * 11 10 9 14 14 N 1.65601 * 104.44884 * 179.97438 * 11 10 9 15 15 C 1.34779 * 119.99693 * 65.00345 * 14 11 10 16 16 O 1.21280 * 119.99832 * 354.95152 * 15 14 11 17 17 C 1.50697 * 119.99513 * 175.22596 * 15 14 11 18 18 H 1.08998 * 109.44027 * 335.74737 * 17 15 14 19 19 C 1.53073 * 109.43606 * 215.82701 * 17 15 14 20 20 C 1.53409 * 108.29402 * 191.74798 * 19 17 15 21 21 O 1.42831 * 108.36870 * 64.75216 * 20 19 17 22 22 C 1.35844 * 117.86088 * 310.85094 * 21 20 19 23 23 C 1.39150 * 118.50033 * 197.02491 * 22 21 20 24 24 C 1.37962 * 120.21705 * 180.17940 * 23 22 21 25 25 C 1.38285 * 119.96219 * 0.02562 * 24 23 22 26 26 C 1.38104 * 119.97984 * 359.91961 * 25 24 23 27 27 C 1.38311 * 121.79259 * 17.10949 * 22 21 20 28 28 H 0.97004 * 119.99875 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47373 * 60.00097 * 9 7 2 30 30 H 1.08997 * 109.47623 * 300.00344 * 9 7 2 31 31 H 1.08996 * 109.46689 * 60.00291 * 10 9 7 32 32 H 1.08997 * 109.46565 * 300.00334 * 10 9 7 33 33 H 0.96993 * 120.00058 * 245.00150 * 14 11 10 34 34 H 1.08996 * 109.70307 * 311.45471 * 19 17 15 35 35 H 1.09001 * 109.69564 * 72.05082 * 19 17 15 36 36 H 1.09001 * 109.68562 * 184.46749 * 20 19 17 37 37 H 1.08995 * 109.68651 * 304.99296 * 20 19 17 38 38 H 1.07998 * 119.88567 * 0.15130 * 23 22 21 39 39 H 1.08005 * 120.01724 * 180.02562 * 24 23 22 40 40 H 1.07992 * 120.01366 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.84284 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2330 -0.0013 12 8 0.6647 -5.4193 -1.2386 13 8 0.6637 -5.4200 1.2354 14 7 2.5204 -6.3927 -0.0020 15 6 3.3469 -6.5130 1.0559 16 8 3.2854 -5.7153 1.9673 17 6 4.3516 -7.6352 1.1032 18 1 4.0070 -8.4573 0.4759 19 6 4.5020 -8.1238 2.5460 20 6 5.7256 -9.0463 2.6170 21 8 6.8902 -8.2726 2.3251 22 6 6.8666 -7.4817 1.2208 23 6 8.0743 -7.0084 0.7172 24 6 8.0913 -6.1996 -0.4004 25 6 6.9050 -5.8569 -1.0229 26 6 5.7046 -6.3258 -0.5266 27 6 5.6817 -7.1396 0.5948 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8718 -3.6044 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 2.6180 -6.9853 -0.7635 34 1 4.6456 -7.2711 3.2096 35 1 3.6091 -8.6743 2.8424 36 1 5.8081 -9.4706 3.6176 37 1 5.6240 -9.8480 1.8855 38 1 9.0013 -7.2747 1.2031 39 1 9.0306 -5.8344 -0.7888 40 1 6.9173 -5.2235 -1.8976 41 1 4.7794 -6.0570 -1.0148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181285750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:24 Heat of formation + Delta-G solvation = -157.895212 kcal Electronic energy + Delta-G solvation = -27581.737524 eV Core-core repulsion = 23552.607914 eV Total energy + Delta-G solvation = -4029.129610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32254 -40.74736 -38.47097 -38.36099 -37.30366 -36.02348 -35.81625 -35.23290 -33.20847 -31.63859 -31.21883 -27.89769 -27.59690 -24.90529 -24.03060 -23.64057 -22.87131 -21.09844 -20.70060 -19.44875 -19.25621 -18.58563 -18.42880 -17.68501 -17.37837 -17.12876 -16.72767 -16.57621 -16.11225 -15.98531 -15.76215 -15.28965 -15.13697 -14.78885 -14.52662 -14.45490 -14.26160 -13.86776 -13.79583 -13.45332 -13.41169 -13.33329 -13.02373 -12.96476 -12.87492 -12.53770 -12.36636 -12.31462 -12.16092 -12.05689 -11.93326 -11.77216 -11.70023 -11.30525 -11.09350 -10.67032 -9.84912 -9.16741 -8.29123 -6.43124 -1.07898 0.24098 0.42297 0.84287 1.33239 1.38834 1.41158 1.52400 2.33179 2.35278 2.49156 2.68442 2.93444 3.04382 3.12458 3.43370 3.45869 3.68215 3.83629 3.97626 3.99237 4.03998 4.08961 4.20732 4.35655 4.47073 4.49386 4.53360 4.65221 4.65496 4.88661 4.97598 5.07141 5.19045 5.20421 5.27154 5.40172 5.55091 5.57300 5.64560 5.81727 6.01677 6.27908 6.44638 6.69043 7.26859 8.83322 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003559 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.815871 B = 7864.562978 C = 9101.902371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.023 3.977 10 C -0.579 4.579 11 S 2.598 3.402 12 O -0.966 6.966 13 O -0.977 6.977 14 N -1.036 6.036 15 C 0.546 3.454 16 O -0.521 6.521 17 C -0.055 4.055 18 H 0.151 0.849 19 C -0.156 4.156 20 C 0.065 3.935 21 O -0.328 6.328 22 C 0.130 3.870 23 C -0.159 4.159 24 C -0.080 4.080 25 C -0.156 4.156 26 C -0.103 4.103 27 C -0.169 4.169 28 H 0.269 0.731 29 H 0.017 0.983 30 H 0.004 0.996 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.451 0.549 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.344 -21.801 -1.309 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.090 0.910 9 C -0.015 4.015 10 C -0.712 4.712 11 S 2.697 3.303 12 O -0.956 6.956 13 O -0.967 6.967 14 N -0.804 5.804 15 C 0.334 3.666 16 O -0.394 6.394 17 C -0.078 4.078 18 H 0.169 0.831 19 C -0.194 4.194 20 C -0.010 4.010 21 O -0.243 6.243 22 C 0.085 3.915 23 C -0.178 4.178 24 C -0.098 4.098 25 C -0.174 4.174 26 C -0.121 4.121 27 C -0.170 4.170 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.023 0.977 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.292 0.708 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.154 0.846 37 H 0.110 0.890 38 H 0.163 0.837 39 H 0.174 0.826 40 H 0.162 0.838 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.338 -21.395 -0.483 26.924 hybrid contribution 0.035 1.164 -0.341 1.213 sum 16.373 -20.231 -0.824 26.039 Atomic orbital electron populations 1.70091 1.07975 1.28434 1.50627 1.26090 0.95889 1.03771 0.94201 0.85311 0.78491 0.77609 0.78858 1.19061 1.20660 1.18643 1.21445 0.93844 0.90729 1.51928 0.90974 1.18826 0.93389 0.92665 0.96667 1.30253 1.12871 1.15730 1.12365 1.05445 0.74755 0.76838 0.73258 1.93571 1.71359 1.85412 1.45294 1.93548 1.71777 1.84917 1.46471 1.54991 1.47974 1.49661 1.27724 1.21014 0.79845 0.86322 0.79465 1.90899 1.68350 1.43257 1.36851 1.20389 0.90190 0.96070 1.01153 0.83129 1.22317 1.01860 1.01576 0.93652 1.23257 0.81075 0.91812 1.04827 1.85985 1.41329 1.55991 1.40971 1.18817 0.93328 0.92598 0.86754 1.20913 0.96396 1.02055 0.98397 1.21335 0.99492 0.95113 0.93847 1.21362 0.92169 1.01841 1.02038 1.21259 0.99723 0.96161 0.94998 1.19374 0.92550 1.05414 0.99711 0.92251 0.96472 0.97741 0.85033 0.83063 0.70763 0.91240 0.86870 0.84635 0.89007 0.83704 0.82640 0.83833 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.02 1.27 4.98 29.85 0.15 1.41 16 10 C -0.58 -23.40 5.80 71.98 0.42 -22.98 16 11 S 2.60 93.69 5.10 -56.49 -0.29 93.40 16 12 O -0.97 -37.19 18.08 -127.65 -2.31 -39.50 16 13 O -0.98 -43.28 17.16 -121.22 -2.08 -45.36 16 14 N -1.04 -24.28 4.90 -173.53 -0.85 -25.13 16 15 C 0.55 14.00 5.52 87.66 0.48 14.49 16 16 O -0.52 -18.37 14.08 11.67 0.16 -18.20 16 17 C -0.06 -0.96 2.70 -12.24 -0.03 -0.99 16 18 H 0.15 1.33 8.12 -2.39 -0.02 1.31 16 19 C -0.16 -2.51 5.35 30.76 0.16 -2.34 16 20 C 0.06 0.75 7.03 72.12 0.51 1.26 16 21 O -0.33 -6.11 10.27 -91.80 -0.94 -7.06 16 22 C 0.13 2.61 6.47 22.51 0.15 2.76 16 23 C -0.16 -2.80 9.94 22.42 0.22 -2.57 16 24 C -0.08 -1.25 10.04 22.22 0.22 -1.02 16 25 C -0.16 -2.69 10.04 22.25 0.22 -2.47 16 26 C -0.10 -1.98 9.10 22.32 0.20 -1.77 16 27 C -0.17 -3.33 5.42 -19.74 -0.11 -3.44 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.02 0.95 8.14 -2.38 -0.02 0.94 16 30 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.13 5.37 7.00 -2.39 -0.02 5.35 16 32 H 0.15 5.04 8.14 -2.39 -0.02 5.03 16 33 H 0.45 6.10 8.75 -96.75 -0.85 5.26 16 34 H 0.07 1.56 7.47 -2.39 -0.02 1.55 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.13 2.16 6.78 -2.91 -0.02 2.14 16 Total: -1.00 -84.52 357.90 -0.48 -85.00 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.22 Total: 15.47 kcal Atomic # 6 Polarization: -51.12 SS G_CDS: 3.29 Total: -47.83 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -0.57 Total: -82.01 kcal Atomic # 8 Polarization: -104.95 SS G_CDS: -5.17 Total: -110.12 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 93.69 SS G_CDS: -0.29 Total: 93.40 kcal Total: -84.52 -0.48 -85.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181285750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.896 kcal (2) G-P(sol) polarization free energy of solvation -84.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds