Wall clock time and date at job start Tue Mar 31 2020 22:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46507 * 120.00143 * 84.99960 * 10 9 7 12 12 C 1.52998 * 109.46948 * 84.99730 * 11 10 9 13 13 C 1.53003 * 117.49745 * 243.74629 * 12 11 10 14 14 C 1.53005 * 117.49777 * 175.08712 * 12 11 10 15 15 S 1.65602 * 120.00281 * 264.99512 * 10 9 7 16 16 O 1.42094 * 106.40564 * 203.54139 * 15 10 9 17 17 O 1.42101 * 106.39758 * 336.46582 * 15 10 9 18 18 C 1.76201 * 107.21409 * 90.00002 * 15 10 9 19 19 C 1.38386 * 119.92584 * 269.72369 * 18 15 10 20 20 C 1.38347 * 120.30367 * 179.76925 * 19 18 15 21 21 C 1.37968 * 120.14946 * 0.50891 * 20 19 18 22 22 C 1.39607 * 119.84628 * 359.75270 * 21 20 19 23 23 C 1.47732 * 120.15134 * 180.02562 * 22 21 20 24 24 O 1.21474 * 119.99769 * 179.97438 * 23 22 21 25 25 O 1.34707 * 119.99890 * 359.97438 * 23 22 21 26 26 C 1.37922 * 119.92179 * 90.00916 * 18 15 10 27 27 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 29 29 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 30 30 H 1.08994 * 109.47044 * 205.00006 * 11 10 9 31 31 H 1.09003 * 109.47057 * 324.99931 * 11 10 9 32 32 H 1.08997 * 115.55547 * 29.41875 * 12 11 10 33 33 H 1.08999 * 117.50006 * 0.02562 * 13 12 11 34 34 H 1.09001 * 117.49698 * 145.02265 * 13 12 11 35 35 H 1.08997 * 117.49844 * 214.97724 * 14 12 11 36 36 H 1.08999 * 117.49592 * 0.02562 * 14 12 11 37 37 H 1.08005 * 119.84856 * 0.03004 * 19 18 15 38 38 H 1.07996 * 119.92968 * 180.26257 * 20 19 18 39 39 H 1.08004 * 120.08074 * 179.76644 * 21 20 19 40 40 H 0.96700 * 116.99716 * 180.02562 * 25 23 22 41 41 H 1.08000 * 120.07969 * 359.94680 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.7621 -4.0981 1.2627 12 6 1.8019 -5.1111 1.8894 13 6 1.1725 -4.7484 3.2359 14 6 2.2596 -5.8237 3.1637 15 16 2.6471 -4.3227 -1.4301 16 8 3.0867 -5.6346 -1.1066 17 8 1.5982 -4.0596 -2.3519 18 6 4.0615 -3.4567 -2.0253 19 6 3.9016 -2.3651 -2.8608 20 6 5.0064 -1.6765 -3.3288 21 6 6.2767 -2.0809 -2.9734 22 6 6.4455 -3.1845 -2.1352 23 6 7.8026 -3.6230 -1.7499 24 8 7.9462 -4.5834 -1.0201 25 8 8.8807 -2.9578 -2.2079 26 6 5.3256 -3.8718 -1.6622 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5575 0.8880 29 1 0.6246 -2.5563 -0.8919 30 1 3.7233 -4.5766 1.0749 31 1 2.9010 -3.2591 1.9446 32 1 1.1932 -5.6794 1.1861 33 1 1.4421 -3.7879 3.6751 34 1 0.1498 -5.0783 3.4186 35 1 1.9517 -6.8604 3.2988 36 1 3.2446 -5.5704 3.5557 37 1 2.9095 -2.0467 -3.1453 38 1 4.8745 -0.8229 -3.9771 39 1 7.1386 -1.5448 -3.3425 40 1 9.7479 -3.2822 -1.9288 41 1 5.4492 -4.7261 -1.0131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184999906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:38 Heat of formation + Delta-G solvation = -110.618599 kcal Electronic energy + Delta-G solvation = -27902.611260 eV Core-core repulsion = 23875.531718 eV Total energy + Delta-G solvation = -4027.079543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50294 -38.65535 -37.57972 -36.73806 -36.24251 -35.33777 -34.83384 -32.48054 -31.60795 -31.22974 -27.93715 -25.44032 -24.88217 -23.27773 -22.44523 -22.01841 -21.43145 -20.38408 -19.05730 -17.99373 -17.72624 -16.89645 -16.52958 -16.05889 -15.96412 -15.77134 -15.75036 -15.25165 -14.62630 -14.41212 -14.22315 -13.97202 -13.49172 -13.25951 -13.02721 -12.64386 -12.53512 -12.23137 -11.91088 -11.74477 -11.73099 -11.55876 -11.49725 -11.28587 -11.21289 -11.13477 -10.92703 -10.82619 -10.64704 -10.52440 -10.20453 -10.08630 -9.79188 -9.53849 -9.43334 -9.12797 -8.55210 -8.14322 -6.17006 -4.23898 0.53177 0.86470 1.07084 2.38080 2.81805 3.18892 3.27417 3.28792 3.39476 3.68288 4.13124 4.25395 4.31002 4.63473 4.75239 4.84921 4.94839 5.06906 5.17154 5.20694 5.22208 5.29422 5.46162 5.59450 5.64373 5.75970 5.83002 5.89906 6.00385 6.11282 6.13454 6.19548 6.20558 6.28077 6.39863 6.50233 6.62693 6.69473 7.29889 7.35835 7.55776 7.70964 7.79694 8.08419 8.81206 9.42573 10.90771 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.008219 B = 0.005689 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.810506 B = 4920.442682 C = 6647.829026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.243 3.757 10 N -0.975 5.975 11 C 0.161 3.839 12 C -0.160 4.160 13 C -0.175 4.175 14 C -0.181 4.181 15 S 2.688 3.312 16 O -0.969 6.969 17 O -0.953 6.953 18 C -0.678 4.678 19 C 0.039 3.961 20 C -0.155 4.155 21 C -0.016 4.016 22 C -0.160 4.160 23 C 0.531 3.469 24 O -0.512 6.512 25 O -0.513 6.513 26 C 0.042 3.958 27 H 0.265 0.735 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.414 0.586 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.317 -4.899 -2.190 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.122 3.878 10 N -0.814 5.814 11 C 0.034 3.966 12 C -0.180 4.180 13 C -0.212 4.212 14 C -0.219 4.219 15 S 2.776 3.224 16 O -0.960 6.960 17 O -0.943 6.943 18 C -0.761 4.761 19 C 0.020 3.980 20 C -0.173 4.173 21 C -0.035 4.035 22 C -0.162 4.162 23 C 0.375 3.625 24 O -0.401 6.401 25 O -0.325 6.325 26 C 0.022 3.978 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.171 0.829 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.272 0.728 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.409 -5.557 -2.530 12.068 hybrid contribution 1.621 1.510 0.272 2.232 sum 12.029 -4.047 -2.259 12.891 Atomic orbital electron populations 1.69931 1.05940 1.27168 1.49394 1.24909 0.94758 0.99024 0.94895 0.86647 0.79927 0.83498 0.78307 1.20450 1.21060 1.19876 1.21546 0.93528 0.90795 1.52372 0.92053 1.19302 0.87150 0.81405 0.99988 1.57369 1.56604 1.49316 1.18071 1.20684 0.94015 0.95745 0.86108 1.22782 1.02789 1.01520 0.90926 1.23019 0.97649 0.99752 1.00795 1.22924 0.99453 0.97402 1.02112 1.02144 0.73464 0.73353 0.73482 1.93544 1.83140 1.35042 1.84244 1.93564 1.52696 1.85584 1.62465 1.31413 1.17334 1.13785 1.13610 1.21360 1.00849 0.88427 0.87343 1.21333 0.91999 1.01393 1.02609 1.21678 0.98325 0.92328 0.91130 1.19021 0.89682 1.01225 1.06259 1.20822 0.85272 0.79710 0.76657 1.90905 1.87059 1.27165 1.34987 1.84546 1.18132 1.58940 1.70909 1.20964 0.89586 0.95328 0.91900 0.92526 0.93591 0.92852 0.91083 0.89583 0.87855 0.88493 0.89217 0.89131 0.88908 0.82894 0.84166 0.84067 0.72784 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 13.29 55.43 0.74 -23.53 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.49 9.38 -34.44 -0.32 -13.81 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.24 5.69 5.43 -5.19 -0.03 5.66 16 10 N -0.97 -19.21 2.77 -115.66 -0.32 -19.53 16 11 C 0.16 2.76 5.62 -4.04 -0.02 2.74 16 12 C -0.16 -2.55 6.01 -90.62 -0.54 -3.09 16 13 C -0.18 -2.49 10.18 -26.69 -0.27 -2.76 16 14 C -0.18 -2.38 10.26 -26.69 -0.27 -2.65 16 15 S 2.69 51.62 5.65 -107.50 -0.61 51.01 16 16 O -0.97 -19.03 16.24 -57.17 -0.93 -19.96 16 17 O -0.95 -20.64 15.82 -57.17 -0.90 -21.54 16 18 C -0.68 -11.67 5.97 -39.64 -0.24 -11.91 16 19 C 0.04 0.64 9.52 -39.49 -0.38 0.26 16 20 C -0.15 -2.06 10.03 -39.64 -0.40 -2.46 16 21 C -0.02 -0.20 9.62 -39.17 -0.38 -0.58 16 22 C -0.16 -2.28 5.87 -104.98 -0.62 -2.90 16 23 C 0.53 7.02 8.27 34.61 0.29 7.31 16 24 O -0.51 -8.11 17.13 -19.25 -0.33 -8.44 16 25 O -0.51 -4.78 12.68 -40.51 -0.51 -5.29 16 26 C 0.04 0.67 9.07 -39.17 -0.36 0.31 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.05 1.13 8.11 -51.93 -0.42 0.71 16 29 H 0.05 1.36 6.92 -51.93 -0.36 1.00 16 30 H 0.07 1.11 7.61 -51.93 -0.40 0.71 16 31 H 0.09 1.47 7.84 -51.93 -0.41 1.07 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.10 1.39 8.03 -51.93 -0.42 0.97 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.15 2.52 7.60 -52.48 -0.40 2.12 16 38 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.14 1.35 7.61 -52.48 -0.40 0.95 16 40 H 0.41 1.90 9.11 45.56 0.42 2.31 16 41 H 0.15 2.37 7.20 -52.49 -0.38 1.99 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -32.17 371.91 -10.34 -42.50 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.42 Total: 6.46 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -3.63 Total: -22.23 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.42 Total: -43.06 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -2.68 Total: -55.23 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 51.62 SS G_CDS: -0.61 Total: 51.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.17 -10.34 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184999906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.114 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds