Wall clock time and date at job start Tue Mar 31 2020 22:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46507 * 120.00143 * 84.99960 * 10 9 7 12 12 C 1.52998 * 109.46948 * 84.99730 * 11 10 9 13 13 C 1.53003 * 117.49745 * 243.74629 * 12 11 10 14 14 C 1.53005 * 117.49777 * 175.08712 * 12 11 10 15 15 S 1.65602 * 120.00281 * 264.99512 * 10 9 7 16 16 O 1.42094 * 106.40564 * 203.54139 * 15 10 9 17 17 O 1.42101 * 106.39758 * 336.46582 * 15 10 9 18 18 C 1.76201 * 107.21409 * 90.00002 * 15 10 9 19 19 C 1.38386 * 119.92584 * 269.72369 * 18 15 10 20 20 C 1.38347 * 120.30367 * 179.76925 * 19 18 15 21 21 C 1.37968 * 120.14946 * 0.50891 * 20 19 18 22 22 C 1.39607 * 119.84628 * 359.75270 * 21 20 19 23 23 C 1.47732 * 120.15134 * 180.02562 * 22 21 20 24 24 O 1.21474 * 119.99769 * 179.97438 * 23 22 21 25 25 O 1.34707 * 119.99890 * 359.97438 * 23 22 21 26 26 C 1.37922 * 119.92179 * 90.00916 * 18 15 10 27 27 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 29 29 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 30 30 H 1.08994 * 109.47044 * 205.00006 * 11 10 9 31 31 H 1.09003 * 109.47057 * 324.99931 * 11 10 9 32 32 H 1.08997 * 115.55547 * 29.41875 * 12 11 10 33 33 H 1.08999 * 117.50006 * 0.02562 * 13 12 11 34 34 H 1.09001 * 117.49698 * 145.02265 * 13 12 11 35 35 H 1.08997 * 117.49844 * 214.97724 * 14 12 11 36 36 H 1.08999 * 117.49592 * 0.02562 * 14 12 11 37 37 H 1.08005 * 119.84856 * 0.03004 * 19 18 15 38 38 H 1.07996 * 119.92968 * 180.26257 * 20 19 18 39 39 H 1.08004 * 120.08074 * 179.76644 * 21 20 19 40 40 H 0.96700 * 116.99716 * 180.02562 * 25 23 22 41 41 H 1.08000 * 120.07969 * 359.94680 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.7621 -4.0981 1.2627 12 6 1.8019 -5.1111 1.8894 13 6 1.1725 -4.7484 3.2359 14 6 2.2596 -5.8237 3.1637 15 16 2.6471 -4.3227 -1.4301 16 8 3.0867 -5.6346 -1.1066 17 8 1.5982 -4.0596 -2.3519 18 6 4.0615 -3.4567 -2.0253 19 6 3.9016 -2.3651 -2.8608 20 6 5.0064 -1.6765 -3.3288 21 6 6.2767 -2.0809 -2.9734 22 6 6.4455 -3.1845 -2.1352 23 6 7.8026 -3.6230 -1.7499 24 8 7.9462 -4.5834 -1.0201 25 8 8.8807 -2.9578 -2.2079 26 6 5.3256 -3.8718 -1.6622 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5575 0.8880 29 1 0.6246 -2.5563 -0.8919 30 1 3.7233 -4.5766 1.0749 31 1 2.9010 -3.2591 1.9446 32 1 1.1932 -5.6794 1.1861 33 1 1.4421 -3.7879 3.6751 34 1 0.1498 -5.0783 3.4186 35 1 1.9517 -6.8604 3.2988 36 1 3.2446 -5.5704 3.5557 37 1 2.9095 -2.0467 -3.1453 38 1 4.8745 -0.8229 -3.9771 39 1 7.1386 -1.5448 -3.3425 40 1 9.7479 -3.2822 -1.9288 41 1 5.4492 -4.7261 -1.0131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184999906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:37 Heat of formation + Delta-G solvation = -131.609986 kcal Electronic energy + Delta-G solvation = -27903.521515 eV Core-core repulsion = 23875.531718 eV Total energy + Delta-G solvation = -4027.989798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52012 -39.75049 -38.89787 -38.33819 -37.16023 -36.95249 -36.40545 -34.36570 -32.76311 -32.37001 -29.68804 -27.06477 -25.96133 -24.58300 -24.12477 -23.14908 -22.49104 -21.68628 -20.31256 -19.24385 -18.86741 -18.59704 -18.28267 -17.49026 -17.17345 -17.04585 -16.74766 -16.59766 -16.23475 -15.80066 -15.48231 -15.10023 -14.81115 -14.49278 -14.38727 -14.30872 -13.95762 -13.56813 -13.42004 -13.22315 -13.15450 -12.98099 -12.82595 -12.74042 -12.65755 -12.59899 -12.37520 -12.28683 -12.06332 -11.93193 -11.77859 -11.68305 -11.22141 -10.76193 -10.63603 -10.52978 -10.27662 -9.79031 -8.14489 -6.27997 -0.67271 -0.50385 -0.18038 1.32006 1.43105 1.45236 1.54393 1.89262 1.98720 2.41936 2.47098 2.73845 2.98506 3.17412 3.27994 3.65384 3.77345 3.80824 3.88995 3.98315 4.04903 4.15588 4.25007 4.26892 4.50733 4.53145 4.67418 4.81510 4.86802 4.89246 4.95131 4.99683 5.09291 5.11957 5.31333 5.32982 5.34154 5.47786 5.51717 5.58924 5.75666 5.90366 6.12294 6.83567 6.88855 7.42066 8.93527 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.008219 B = 0.005689 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.810506 B = 4920.442682 C = 6647.829026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.018 3.982 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.260 3.740 10 N -0.980 5.980 11 C 0.157 3.843 12 C -0.191 4.191 13 C -0.176 4.176 14 C -0.155 4.155 15 S 2.694 3.306 16 O -0.979 6.979 17 O -0.987 6.987 18 C -0.687 4.687 19 C 0.015 3.985 20 C -0.147 4.147 21 C 0.003 3.997 22 C -0.166 4.166 23 C 0.540 3.460 24 O -0.544 6.544 25 O -0.496 6.496 26 C 0.029 3.971 27 H 0.265 0.735 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.140 0.860 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.437 0.563 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.582 -3.680 -2.391 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.137 3.863 10 N -0.817 5.817 11 C 0.032 3.968 12 C -0.211 4.211 13 C -0.213 4.213 14 C -0.193 4.193 15 S 2.787 3.213 16 O -0.969 6.969 17 O -0.977 6.977 18 C -0.775 4.775 19 C -0.004 4.004 20 C -0.165 4.165 21 C -0.015 4.015 22 C -0.168 4.168 23 C 0.386 3.614 24 O -0.436 6.436 25 O -0.310 6.310 26 C 0.009 3.991 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.158 0.842 38 H 0.192 0.808 39 H 0.200 0.800 40 H 0.300 0.700 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 13.683 -4.371 -2.715 14.619 hybrid contribution 0.728 1.109 0.278 1.355 sum 14.412 -3.263 -2.437 14.976 Atomic orbital electron populations 1.70061 1.07554 1.27967 1.50828 1.25705 0.95442 1.02437 0.94659 0.85665 0.78753 0.79255 0.78769 1.19260 1.21317 1.19012 1.21772 0.93773 0.91213 1.51293 0.91479 1.18827 0.87336 0.82463 0.97671 1.57233 1.56630 1.48406 1.19463 1.20855 0.94908 0.96045 0.85041 1.22739 1.03881 1.02631 0.91816 1.23068 0.98627 1.00371 0.99282 1.23050 0.99728 0.97863 0.98641 1.01569 0.73645 0.73251 0.72870 1.93517 1.83291 1.35806 1.84320 1.93513 1.54831 1.86059 1.63339 1.30856 1.16461 1.14834 1.15331 1.21457 1.01658 0.89025 0.88309 1.21714 0.91228 1.01548 1.02025 1.22118 0.99240 0.91035 0.89106 1.19226 0.89883 1.01469 1.06188 1.20563 0.85687 0.79180 0.75994 1.90904 1.87543 1.28645 1.36511 1.84476 1.18629 1.57901 1.69989 1.20973 0.89859 0.95776 0.92493 0.92554 0.95481 0.95734 0.89657 0.89790 0.89332 0.88737 0.88543 0.87446 0.87348 0.84216 0.80763 0.80033 0.70046 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.86 13.29 21.45 0.28 -51.58 16 2 C 0.02 0.91 5.46 84.65 0.46 1.37 16 3 Si 0.95 40.43 29.54 68.60 2.03 42.46 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.54 -27.33 9.38 25.60 0.24 -27.09 16 8 H 0.07 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.26 12.79 5.43 85.64 0.47 13.25 16 10 N -0.98 -40.32 2.77 -519.84 -1.44 -41.76 16 11 C 0.16 5.51 5.62 86.38 0.49 6.00 16 12 C -0.19 -6.19 6.01 -10.79 -0.06 -6.25 16 13 C -0.18 -5.00 10.18 30.62 0.31 -4.69 16 14 C -0.16 -3.87 10.26 30.62 0.31 -3.55 16 15 S 2.69 108.27 5.65 -56.49 -0.32 107.95 16 16 O -0.98 -39.82 16.24 -128.00 -2.08 -41.90 16 17 O -0.99 -45.45 15.82 -128.00 -2.02 -47.47 16 18 C -0.69 -23.87 5.97 22.23 0.13 -23.74 16 19 C 0.01 0.48 9.52 22.33 0.21 0.69 16 20 C -0.15 -3.46 10.03 22.23 0.22 -3.23 16 21 C 0.00 0.06 9.62 22.54 0.22 0.28 16 22 C -0.17 -4.31 5.87 -20.09 -0.12 -4.43 16 23 C 0.54 12.73 8.27 70.33 0.58 13.31 16 24 O -0.54 -16.29 17.13 19.92 0.34 -15.95 16 25 O -0.50 -7.05 12.68 -56.17 -0.71 -7.76 16 26 C 0.03 0.90 9.07 22.54 0.20 1.11 16 27 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 29 H 0.02 1.34 6.92 -2.39 -0.02 1.33 16 30 H 0.09 2.69 7.61 -2.39 -0.02 2.67 16 31 H 0.08 2.93 7.84 -2.39 -0.02 2.91 16 32 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.09 2.71 8.03 -2.39 -0.02 2.69 16 34 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.14 4.76 7.60 -2.91 -0.02 4.74 16 38 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.18 2.35 7.61 -2.91 -0.02 2.33 16 40 H 0.44 2.11 9.11 -74.06 -0.67 1.44 16 41 H 0.15 4.61 7.20 -2.91 -0.02 4.59 16 Total: -1.00 -71.20 371.91 0.14 -71.06 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.39 Total: 21.95 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 3.67 Total: -36.99 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -1.15 Total: -93.34 kcal Atomic # 8 Polarization: -108.62 SS G_CDS: -4.47 Total: -113.09 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 108.27 SS G_CDS: -0.32 Total: 107.95 kcal Total: -71.20 0.14 -71.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184999906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.549 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds