Wall clock time and date at job start Tue Mar 31 2020 23:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46863 * 2 1 4 4 H 1.09008 * 109.46600 * 183.93844 * 3 2 1 5 5 C 1.50701 * 109.47187 * 303.93413 * 3 2 1 6 6 H 1.07994 * 119.99862 * 120.00299 * 5 3 2 7 7 C 1.37885 * 120.00011 * 300.00676 * 5 3 2 8 8 N 1.31509 * 119.99929 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99979 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47242 * 89.99488 * 9 7 5 11 11 H 1.48501 * 109.47491 * 209.99690 * 9 7 5 12 12 H 1.48507 * 109.47259 * 329.99870 * 9 7 5 13 13 N 1.46495 * 109.47444 * 63.93757 * 3 2 1 14 14 S 1.65606 * 119.99997 * 95.22578 * 13 3 2 15 15 O 1.42097 * 106.39778 * 178.84409 * 14 13 3 16 16 O 1.42098 * 106.39843 * 311.76093 * 14 13 3 17 17 C 1.76199 * 107.21691 * 65.30056 * 14 13 3 18 18 C 1.38404 * 119.82401 * 269.71903 * 17 14 13 19 19 C 1.37891 * 120.17111 * 179.76788 * 18 17 14 20 20 C 1.39853 * 119.82230 * 0.53082 * 19 18 17 21 21 C 1.47175 * 120.17121 * 179.74367 * 20 19 18 22 22 C 1.34911 * 120.00030 * 224.53412 * 21 20 19 23 23 C 1.46238 * 120.00158 * 11.97020 * 22 21 20 24 24 O 1.21624 * 120.00100 * 6.51617 * 23 22 21 25 25 O 1.34905 * 119.99941 * 186.51912 * 23 22 21 26 26 C 1.39859 * 119.65837 * 359.73270 * 20 19 18 27 27 C 1.37890 * 119.82247 * 359.97438 * 26 20 19 28 28 H 1.08994 * 109.46877 * 175.35822 * 1 2 3 29 29 H 1.09001 * 109.47008 * 295.36486 * 1 2 3 30 30 H 1.09003 * 109.46810 * 55.35656 * 1 2 3 31 31 H 1.08995 * 109.47416 * 239.99623 * 2 1 3 32 32 H 1.09003 * 109.47338 * 119.99502 * 2 1 3 33 33 H 0.97003 * 119.99891 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00168 * 275.49776 * 13 3 2 35 35 H 1.08005 * 119.91685 * 0.02562 * 18 17 14 36 36 H 1.08003 * 120.08791 * 180.26413 * 19 18 17 37 37 H 1.07999 * 119.99778 * 44.53761 * 21 20 19 38 38 H 1.08005 * 119.99930 * 191.96661 * 22 21 20 39 39 H 0.96701 * 114.00140 * 179.97438 * 25 23 22 40 40 H 1.07997 * 120.08566 * 179.97438 * 26 20 19 41 41 H 1.07998 * 119.90878 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1278 1.4433 -0.0706 5 6 1.4596 2.1805 -1.1788 6 1 0.8471 3.0556 -1.0197 7 6 1.7106 1.7384 -2.4605 8 7 2.4568 0.6730 -2.6543 9 14 0.9906 2.6527 -3.9216 10 1 1.9408 3.7045 -4.3646 11 1 0.7540 1.6988 -5.0349 12 1 -0.2954 3.2819 -3.5271 13 7 1.6307 2.1053 1.2407 14 16 2.6680 2.1620 2.5304 15 8 1.9969 2.8844 3.5535 16 8 3.1610 0.8410 2.7070 17 6 4.0468 3.1472 2.0477 18 6 5.1470 2.5496 1.4578 19 6 6.2279 3.3145 1.0730 20 6 6.2149 4.6960 1.2903 21 6 7.3668 5.5189 0.8877 22 6 7.8454 6.4641 1.7230 23 6 7.4020 6.5013 3.1160 24 8 6.6957 5.6129 3.5533 25 8 7.7763 7.5209 3.9160 26 6 5.1017 5.2915 1.8919 27 6 4.0261 4.5138 2.2656 28 1 -0.3633 -1.0243 -0.0832 29 1 -0.3633 0.4402 0.9286 30 1 -0.3633 0.5842 -0.8455 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.6337 0.3622 -3.5560 34 1 0.7506 2.5074 1.3082 35 1 5.1573 1.4820 1.2947 36 1 7.0839 2.8473 0.6089 37 1 7.8289 5.3661 -0.0764 38 1 8.5560 7.1933 1.3628 39 1 7.4343 7.4589 4.8184 40 1 5.0845 6.3577 2.0634 41 1 3.1655 4.9723 2.7299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211541765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:18 Heat of formation + Delta-G solvation = -118.187434 kcal Electronic energy + Delta-G solvation = -27550.775250 eV Core-core repulsion = 23523.367498 eV Total energy + Delta-G solvation = -4027.407752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60979 -38.88078 -36.72127 -36.35181 -35.93073 -35.25459 -34.24501 -32.19673 -30.90998 -30.31057 -30.07195 -26.31582 -25.31014 -23.58489 -22.70404 -22.56801 -20.03881 -19.74725 -18.87667 -18.44255 -17.58891 -17.24567 -16.76770 -16.14489 -15.86711 -15.43333 -15.03150 -14.92836 -14.49748 -14.20850 -14.07263 -13.62955 -13.38015 -13.28902 -13.11071 -12.77440 -12.67748 -12.21746 -12.01172 -11.74354 -11.67044 -11.51593 -11.45383 -11.17933 -11.02711 -10.92438 -10.79930 -10.61356 -10.47357 -10.30504 -10.24212 -9.99375 -9.60650 -9.14739 -8.80168 -8.61175 -8.47981 -8.22268 -6.14007 -4.20171 0.22207 1.06779 1.38951 1.61890 2.71106 2.97682 3.22163 3.30110 3.32376 3.59268 3.89251 4.33371 4.35144 4.40267 4.73722 4.86984 4.98677 5.04511 5.17286 5.18019 5.44854 5.55370 5.69568 5.82790 5.87681 6.12524 6.17357 6.28861 6.33475 6.35855 6.44964 6.45462 6.57974 6.70010 7.01033 7.05676 7.29708 7.49122 7.55410 7.64812 7.67589 7.83489 8.04264 8.27408 8.81550 9.44424 10.91554 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003891 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.004588 B = 7193.849327 C = 8514.419690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.134 4.134 3 C 0.279 3.721 4 H 0.041 0.959 5 C -0.519 4.519 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 N -1.098 6.098 14 S 2.687 3.313 15 O -0.983 6.983 16 O -0.963 6.963 17 C -0.649 4.649 18 C -0.018 4.018 19 C -0.115 4.115 20 C -0.039 4.039 21 C 0.000 4.000 22 C -0.199 4.199 23 C 0.495 3.505 24 O -0.494 6.494 25 O -0.510 6.510 26 C -0.078 4.078 27 C -0.027 4.027 28 H 0.024 0.976 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.409 0.591 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.408 0.592 40 H 0.117 0.883 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 10.327 6.549 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.174 4.174 3 C 0.175 3.825 4 H 0.059 0.941 5 C -0.558 4.558 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.859 5.859 14 S 2.776 3.224 15 O -0.973 6.973 16 O -0.953 6.953 17 C -0.735 4.735 18 C -0.037 4.037 19 C -0.134 4.134 20 C -0.039 4.039 21 C -0.018 4.018 22 C -0.218 4.218 23 C 0.340 3.660 24 O -0.382 6.382 25 O -0.321 6.321 26 C -0.097 4.097 27 C -0.047 4.047 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.243 0.757 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.265 0.735 40 H 0.135 0.865 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.004 9.520 6.910 15.442 hybrid contribution -0.365 1.174 -0.821 1.478 sum 9.639 10.694 6.089 15.631 Atomic orbital electron populations 1.21570 0.97666 0.98671 1.00766 1.21952 0.95194 0.98838 1.01436 1.18581 0.95163 0.89289 0.79516 0.94093 1.21207 1.32395 1.12188 0.90041 0.91847 1.24863 0.95057 0.94947 0.98722 1.69871 1.37494 1.23087 1.21828 0.86548 0.79534 0.79485 0.82145 1.20756 1.21160 1.19835 1.55517 1.27495 1.71767 1.31125 1.01913 0.73497 0.73929 0.73047 1.93515 1.73632 1.74439 1.55725 1.93560 1.81278 1.35345 1.85121 1.31174 1.19057 1.08467 1.14808 1.20844 0.91113 1.00433 0.91334 1.21255 0.98999 0.92494 1.00646 1.19143 0.93593 0.93877 0.97301 1.22742 0.90979 0.89607 0.98513 1.22251 1.06540 1.02499 0.90510 1.21209 0.77285 0.79257 0.88269 1.91108 1.34047 1.37049 1.76045 1.85041 1.71906 1.47621 1.27512 1.21021 0.92925 0.99191 0.96556 1.20635 0.98023 0.91656 0.94354 0.95711 0.95156 0.91669 0.88531 0.94914 0.92643 0.75662 0.83963 0.85086 0.83028 0.83471 0.73473 0.86515 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.53 37.16 0.35 -2.37 16 2 C -0.13 -3.12 5.64 -26.73 -0.15 -3.27 16 3 C 0.28 6.44 2.46 -69.08 -0.17 6.27 16 4 H 0.04 1.00 7.27 -51.92 -0.38 0.62 16 5 C -0.52 -12.80 7.23 -34.44 -0.25 -13.05 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 8 N -0.88 -23.20 11.36 55.43 0.63 -22.57 16 9 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 N -1.10 -21.97 4.96 -5.88 -0.03 -22.00 16 14 S 2.69 52.34 5.65 -107.50 -0.61 51.74 16 15 O -0.98 -20.08 17.26 -57.17 -0.99 -21.07 16 16 O -0.96 -20.89 16.49 -57.17 -0.94 -21.83 16 17 C -0.65 -11.81 5.84 -39.46 -0.23 -12.04 16 18 C -0.02 -0.31 8.91 -39.65 -0.35 -0.67 16 19 C -0.12 -1.69 9.80 -39.10 -0.38 -2.08 16 20 C -0.04 -0.53 4.47 -105.06 -0.47 -1.00 16 21 C 0.00 0.00 9.80 -37.14 -0.36 -0.37 16 22 C -0.20 -1.72 10.03 -37.55 -0.38 -2.09 16 23 C 0.50 5.24 7.31 33.94 0.25 5.49 16 24 O -0.49 -6.98 13.03 -19.36 -0.25 -7.23 16 25 O -0.51 -4.12 13.56 -41.05 -0.56 -4.67 16 26 C -0.08 -1.16 6.68 -39.10 -0.26 -1.42 16 27 C -0.03 -0.46 9.50 -39.65 -0.38 -0.84 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.58 7.80 -51.93 -0.41 0.17 16 30 H 0.06 1.44 6.93 -51.93 -0.36 1.08 16 31 H 0.10 2.44 6.19 -51.93 -0.32 2.12 16 32 H 0.03 0.74 7.62 -51.93 -0.40 0.35 16 33 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.41 7.49 8.78 -34.47 -0.30 7.19 16 35 H 0.14 2.42 7.60 -52.48 -0.40 2.02 16 36 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.41 1.82 8.98 45.56 0.41 2.23 16 40 H 0.12 1.49 7.16 -52.49 -0.38 1.12 16 41 H 0.14 2.08 7.60 -52.49 -0.40 1.68 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -33.15 360.03 -9.38 -42.53 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.16 Total: 10.63 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -2.88 Total: -25.83 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.60 Total: -44.56 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -2.74 Total: -54.80 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 52.34 SS G_CDS: -0.61 Total: 51.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.15 -9.38 -42.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211541765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.660 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds