Wall clock time and date at job start Tue Mar 31 2020 23:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46863 * 2 1 4 4 H 1.09008 * 109.46600 * 183.93844 * 3 2 1 5 5 C 1.50701 * 109.47187 * 303.93413 * 3 2 1 6 6 H 1.07994 * 119.99862 * 120.00299 * 5 3 2 7 7 C 1.37885 * 120.00011 * 300.00676 * 5 3 2 8 8 N 1.31509 * 119.99929 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99979 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47242 * 89.99488 * 9 7 5 11 11 H 1.48501 * 109.47491 * 209.99690 * 9 7 5 12 12 H 1.48507 * 109.47259 * 329.99870 * 9 7 5 13 13 N 1.46495 * 109.47444 * 63.93757 * 3 2 1 14 14 S 1.65606 * 119.99997 * 95.22578 * 13 3 2 15 15 O 1.42097 * 106.39778 * 178.84409 * 14 13 3 16 16 O 1.42098 * 106.39843 * 311.76093 * 14 13 3 17 17 C 1.76199 * 107.21691 * 65.30056 * 14 13 3 18 18 C 1.38404 * 119.82401 * 269.71903 * 17 14 13 19 19 C 1.37891 * 120.17111 * 179.76788 * 18 17 14 20 20 C 1.39853 * 119.82230 * 0.53082 * 19 18 17 21 21 C 1.47175 * 120.17121 * 179.74367 * 20 19 18 22 22 C 1.34911 * 120.00030 * 224.53412 * 21 20 19 23 23 C 1.46238 * 120.00158 * 11.97020 * 22 21 20 24 24 O 1.21624 * 120.00100 * 6.51617 * 23 22 21 25 25 O 1.34905 * 119.99941 * 186.51912 * 23 22 21 26 26 C 1.39859 * 119.65837 * 359.73270 * 20 19 18 27 27 C 1.37890 * 119.82247 * 359.97438 * 26 20 19 28 28 H 1.08994 * 109.46877 * 175.35822 * 1 2 3 29 29 H 1.09001 * 109.47008 * 295.36486 * 1 2 3 30 30 H 1.09003 * 109.46810 * 55.35656 * 1 2 3 31 31 H 1.08995 * 109.47416 * 239.99623 * 2 1 3 32 32 H 1.09003 * 109.47338 * 119.99502 * 2 1 3 33 33 H 0.97003 * 119.99891 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00168 * 275.49776 * 13 3 2 35 35 H 1.08005 * 119.91685 * 0.02562 * 18 17 14 36 36 H 1.08003 * 120.08791 * 180.26413 * 19 18 17 37 37 H 1.07999 * 119.99778 * 44.53761 * 21 20 19 38 38 H 1.08005 * 119.99930 * 191.96661 * 22 21 20 39 39 H 0.96701 * 114.00140 * 179.97438 * 25 23 22 40 40 H 1.07997 * 120.08566 * 179.97438 * 26 20 19 41 41 H 1.07998 * 119.90878 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1278 1.4433 -0.0706 5 6 1.4596 2.1805 -1.1788 6 1 0.8471 3.0556 -1.0197 7 6 1.7106 1.7384 -2.4605 8 7 2.4568 0.6730 -2.6543 9 14 0.9906 2.6527 -3.9216 10 1 1.9408 3.7045 -4.3646 11 1 0.7540 1.6988 -5.0349 12 1 -0.2954 3.2819 -3.5271 13 7 1.6307 2.1053 1.2407 14 16 2.6680 2.1620 2.5304 15 8 1.9969 2.8844 3.5535 16 8 3.1610 0.8410 2.7070 17 6 4.0468 3.1472 2.0477 18 6 5.1470 2.5496 1.4578 19 6 6.2279 3.3145 1.0730 20 6 6.2149 4.6960 1.2903 21 6 7.3668 5.5189 0.8877 22 6 7.8454 6.4641 1.7230 23 6 7.4020 6.5013 3.1160 24 8 6.6957 5.6129 3.5533 25 8 7.7763 7.5209 3.9160 26 6 5.1017 5.2915 1.8919 27 6 4.0261 4.5138 2.2656 28 1 -0.3633 -1.0243 -0.0832 29 1 -0.3633 0.4402 0.9286 30 1 -0.3633 0.5842 -0.8455 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.6337 0.3622 -3.5560 34 1 0.7506 2.5074 1.3082 35 1 5.1573 1.4820 1.2947 36 1 7.0839 2.8473 0.6089 37 1 7.8289 5.3661 -0.0764 38 1 8.5560 7.1933 1.3628 39 1 7.4343 7.4589 4.8184 40 1 5.0845 6.3577 2.0634 41 1 3.1655 4.9723 2.7299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211541765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:17 Heat of formation + Delta-G solvation = -141.861879 kcal Electronic energy + Delta-G solvation = -27551.801851 eV Core-core repulsion = 23523.367498 eV Total energy + Delta-G solvation = -4028.434353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46547 -39.95528 -38.37968 -37.70786 -37.14365 -36.89984 -35.14276 -34.06893 -32.10126 -32.05484 -31.13511 -28.19243 -26.20822 -25.42206 -23.86892 -23.63494 -21.83956 -20.61268 -20.35243 -19.25190 -19.06514 -18.74065 -17.93145 -17.74547 -17.12735 -16.77620 -16.51393 -15.93960 -15.89288 -15.38597 -15.31017 -14.93313 -14.90413 -14.56439 -14.44019 -14.13503 -14.07901 -13.88185 -13.42375 -13.19185 -13.11345 -13.05178 -12.79511 -12.64686 -12.54054 -12.40707 -12.33688 -12.18908 -11.89719 -11.79737 -11.63411 -11.43817 -11.10399 -10.99051 -10.50484 -10.03390 -9.94106 -9.57035 -8.06575 -6.18071 -0.75734 -0.42774 0.31101 0.44619 1.46572 1.49917 1.57824 1.93607 2.16232 2.33029 2.47885 2.56267 2.86227 3.23558 3.38574 3.53768 3.79302 3.86923 4.23244 4.28143 4.40628 4.47944 4.50819 4.70112 4.71239 4.81432 4.84825 4.91858 4.93208 5.05470 5.10952 5.24999 5.26250 5.41247 5.49021 5.54287 5.63168 5.74194 5.76701 5.83960 6.10427 6.16623 6.46079 6.89760 6.94766 7.49080 8.98613 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003891 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.004588 B = 7193.849327 C = 8514.419690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 C 0.284 3.716 4 H 0.024 0.976 5 C -0.525 4.525 6 H 0.065 0.935 7 C 0.026 3.974 8 N -0.910 5.910 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.269 1.269 13 N -1.096 6.096 14 S 2.702 3.298 15 O -0.995 6.995 16 O -0.992 6.992 17 C -0.670 4.670 18 C -0.041 4.041 19 C -0.124 4.124 20 C -0.029 4.029 21 C -0.011 4.011 22 C -0.180 4.180 23 C 0.492 3.508 24 O -0.537 6.537 25 O -0.503 6.503 26 C -0.083 4.083 27 C -0.045 4.045 28 H 0.039 0.961 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.416 0.584 35 H 0.132 0.868 36 H 0.161 0.839 37 H 0.191 0.809 38 H 0.186 0.814 39 H 0.423 0.577 40 H 0.137 0.863 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.247 12.757 5.804 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.174 4.174 3 C 0.179 3.821 4 H 0.042 0.958 5 C -0.565 4.565 6 H 0.083 0.917 7 C -0.174 4.174 8 N -0.549 5.549 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.857 5.857 14 S 2.794 3.206 15 O -0.985 6.985 16 O -0.982 6.982 17 C -0.759 4.759 18 C -0.061 4.061 19 C -0.143 4.143 20 C -0.030 4.030 21 C -0.029 4.029 22 C -0.198 4.198 23 C 0.339 3.661 24 O -0.429 6.429 25 O -0.314 6.314 26 C -0.102 4.102 27 C -0.065 4.065 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.252 0.748 35 H 0.150 0.850 36 H 0.179 0.821 37 H 0.208 0.792 38 H 0.203 0.797 39 H 0.283 0.717 40 H 0.154 0.846 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.342 11.960 6.199 17.609 hybrid contribution -0.642 0.549 -0.480 0.972 sum 10.700 12.509 5.718 17.426 Atomic orbital electron populations 1.21498 0.95947 0.99657 1.01007 1.21897 0.96771 0.98680 1.00090 1.18333 0.94129 0.89384 0.80251 0.95848 1.21425 1.32170 1.12206 0.90652 0.91661 1.25510 0.95410 0.95590 1.00929 1.69991 1.38510 1.24223 1.22181 0.85657 0.78970 0.78325 0.79252 1.20448 1.21295 1.19333 1.55323 1.28343 1.71900 1.30157 1.01205 0.73470 0.73374 0.72560 1.93485 1.74366 1.74505 1.56172 1.93513 1.81692 1.37417 1.85560 1.30764 1.18691 1.08957 1.17456 1.20970 0.92216 1.00475 0.92413 1.21633 0.99050 0.93151 1.00431 1.19631 0.94594 0.93946 0.94794 1.22970 0.90142 0.89255 1.00549 1.22637 1.06102 1.02034 0.89057 1.21702 0.76355 0.78816 0.89259 1.91110 1.36098 1.38725 1.76978 1.85015 1.71399 1.46455 1.28579 1.21316 0.92668 1.00063 0.96130 1.20837 0.99236 0.91310 0.95071 0.94143 0.93643 0.92834 0.90770 0.95293 0.92728 0.74837 0.84978 0.82098 0.79237 0.79663 0.71720 0.84559 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 9.53 71.98 0.69 -4.51 16 2 C -0.13 -6.39 5.64 30.60 0.17 -6.21 16 3 C 0.28 13.46 2.46 44.25 0.11 13.57 16 4 H 0.02 1.20 7.27 -2.38 -0.02 1.18 16 5 C -0.53 -26.07 7.23 25.60 0.19 -25.88 16 6 H 0.07 3.15 7.81 -2.91 -0.02 3.13 16 7 C 0.03 1.32 5.30 84.66 0.45 1.77 16 8 N -0.91 -48.36 11.36 21.45 0.24 -48.11 16 9 Si 0.95 40.50 29.54 68.60 2.03 42.53 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 N -1.10 -44.93 4.96 -172.52 -0.86 -45.79 16 14 S 2.70 109.11 5.65 -56.49 -0.32 108.79 16 15 O -0.99 -41.63 17.26 -128.00 -2.21 -43.84 16 16 O -0.99 -44.97 16.49 -128.00 -2.11 -47.08 16 17 C -0.67 -25.12 5.84 22.35 0.13 -24.99 16 18 C -0.04 -1.47 8.91 22.23 0.20 -1.28 16 19 C -0.12 -3.55 9.80 22.58 0.22 -3.33 16 20 C -0.03 -0.75 4.47 -20.15 -0.09 -0.84 16 21 C -0.01 -0.17 9.80 23.85 0.23 0.06 16 22 C -0.18 -2.33 10.03 23.58 0.24 -2.09 16 23 C 0.49 9.04 7.31 69.90 0.51 9.55 16 24 O -0.54 -14.43 13.03 19.43 0.25 -14.17 16 25 O -0.50 -6.61 13.56 -58.20 -0.79 -7.40 16 26 C -0.08 -2.37 6.68 22.58 0.15 -2.22 16 27 C -0.05 -1.52 9.50 22.23 0.21 -1.31 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.73 7.80 -2.39 -0.02 1.71 16 30 H 0.05 2.36 6.93 -2.39 -0.02 2.34 16 31 H 0.07 3.86 6.19 -2.39 -0.01 3.85 16 32 H 0.03 1.35 7.62 -2.39 -0.02 1.33 16 33 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 34 H 0.42 15.46 8.78 -96.75 -0.85 14.61 16 35 H 0.13 4.81 7.60 -2.91 -0.02 4.78 16 36 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.42 2.81 8.98 -74.06 -0.66 2.14 16 40 H 0.14 3.24 7.16 -2.91 -0.02 3.22 16 41 H 0.14 4.39 7.60 -2.91 -0.02 4.37 16 Total: -1.00 -72.27 360.03 -0.78 -73.05 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.43 Total: 29.73 kcal Atomic # 6 Polarization: -51.11 SS G_CDS: 3.40 Total: -47.71 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -0.61 Total: -93.90 kcal Atomic # 8 Polarization: -107.64 SS G_CDS: -4.86 Total: -112.49 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 109.11 SS G_CDS: -0.32 Total: 108.79 kcal Total: -72.27 -0.78 -73.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211541765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.813 kcal (2) G-P(sol) polarization free energy of solvation -72.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds