Wall clock time and date at job start Tue Mar 31 2020 23:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46950 * 2 1 4 4 H 1.08997 * 109.47357 * 305.89691 * 3 2 1 5 5 C 1.50700 * 109.47197 * 185.89540 * 3 2 1 6 6 H 1.08000 * 120.00354 * 240.00271 * 5 3 2 7 7 C 1.37877 * 119.99805 * 59.99668 * 5 3 2 8 8 N 1.31520 * 119.99917 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99971 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47173 * 120.00606 * 9 7 5 12 12 H 1.48501 * 109.46955 * 240.00593 * 9 7 5 13 13 N 1.46507 * 109.46937 * 65.89883 * 3 2 1 14 14 S 1.65600 * 119.99622 * 216.58536 * 13 3 2 15 15 O 1.42098 * 106.40483 * 311.60370 * 14 13 3 16 16 O 1.42106 * 106.39814 * 178.68504 * 14 13 3 17 17 C 1.76202 * 107.22023 * 65.14506 * 14 13 3 18 18 C 1.38407 * 119.82511 * 84.86297 * 17 14 13 19 19 C 1.37884 * 120.17217 * 179.97438 * 18 17 14 20 20 C 1.39850 * 119.82374 * 0.02562 * 19 18 17 21 21 C 1.47179 * 120.17224 * 179.97438 * 20 19 18 22 22 C 1.34923 * 119.99450 * 46.12428 * 21 20 19 23 23 C 1.46230 * 119.99950 * 11.26438 * 22 21 20 24 24 O 1.21623 * 120.00265 * 6.87059 * 23 22 21 25 25 O 1.34909 * 119.99561 * 186.87246 * 23 22 21 26 26 C 1.39859 * 119.66108 * 0.27661 * 20 19 18 27 27 C 1.37887 * 119.81849 * 359.42194 * 26 20 19 28 28 H 1.09003 * 109.46446 * 184.86773 * 1 2 3 29 29 H 1.08997 * 109.47238 * 304.86974 * 1 2 3 30 30 H 1.09001 * 109.46784 * 64.87223 * 1 2 3 31 31 H 1.08995 * 109.46857 * 239.99794 * 2 1 3 32 32 H 1.09004 * 109.46761 * 120.00173 * 2 1 3 33 33 H 0.96997 * 120.00079 * 179.97438 * 8 7 5 34 34 H 0.96991 * 119.99916 * 36.58259 * 13 3 2 35 35 H 1.08001 * 119.91469 * 0.02686 * 18 17 14 36 36 H 1.08004 * 120.08723 * 180.02562 * 19 18 17 37 37 H 1.07994 * 119.99894 * 226.39622 * 21 20 19 38 38 H 1.07995 * 119.99729 * 191.26556 * 22 21 20 39 39 H 0.96705 * 113.99970 * 179.97438 * 25 23 22 40 40 H 1.07992 * 120.08975 * 179.72057 * 26 20 19 41 41 H 1.07998 * 119.91586 * 180.29915 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5931 1.9859 -0.8324 5 6 3.5399 1.4451 -0.1459 6 1 4.1567 1.8856 0.6235 7 6 4.1249 0.8849 -1.2617 8 7 3.3739 0.3488 -2.1989 9 14 5.9842 0.8874 -1.4423 10 1 6.5955 1.5454 -0.2598 11 1 6.4741 -0.5111 -1.5385 12 1 6.3610 1.6296 -2.6722 13 7 1.6710 2.0909 1.2609 14 16 1.2364 3.6888 1.2740 15 8 2.2305 4.3811 0.5312 16 8 0.9113 4.0051 2.6207 17 6 -0.2600 3.8300 0.3545 18 6 -1.4746 3.5993 0.9768 19 6 -2.6500 3.7083 0.2643 20 6 -2.6126 4.0524 -1.0907 21 6 -3.8626 4.1703 -1.8588 22 6 -4.9098 4.8469 -1.3431 23 6 -4.7324 5.6666 -0.1452 24 8 -3.6195 5.8397 0.3139 25 8 -5.8031 6.2309 0.4507 26 6 -1.3810 4.2777 -1.7139 27 6 -0.2147 4.1708 -0.9861 28 1 -0.3632 -1.0240 0.0872 29 1 -0.3633 0.5875 0.8431 30 1 -0.3633 0.4364 -0.9304 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.7854 -0.0450 -2.9841 34 1 1.6812 1.5842 2.0879 35 1 -1.5019 3.3341 2.0234 36 1 -3.5971 3.5285 0.7513 37 1 -3.9430 3.7116 -2.8331 38 1 -5.8791 4.7831 -1.8151 39 1 -5.5868 6.7535 1.2350 40 1 -1.3438 4.5393 -2.7610 41 1 0.7370 4.3492 -1.4646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211541840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:21 Heat of formation + Delta-G solvation = -117.364107 kcal Electronic energy + Delta-G solvation = -27689.220116 eV Core-core repulsion = 23661.848066 eV Total energy + Delta-G solvation = -4027.372050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.63123 -38.92468 -36.59331 -36.37752 -35.90090 -35.13967 -34.27801 -32.15490 -30.94972 -30.60883 -30.12245 -26.60477 -25.34033 -23.05526 -22.71836 -22.59775 -20.18433 -19.79740 -18.95471 -18.47218 -17.67359 -16.99183 -16.86183 -16.18156 -15.90637 -15.52216 -15.05775 -14.94698 -14.47958 -14.21135 -14.12864 -13.68096 -13.39846 -13.28797 -13.16224 -12.94276 -12.73647 -12.03981 -11.87296 -11.76828 -11.62190 -11.42069 -11.35451 -11.20031 -11.16940 -10.90211 -10.83041 -10.78614 -10.43511 -10.27172 -10.16948 -9.83246 -9.78611 -9.65727 -8.85502 -8.55760 -8.41567 -8.21341 -6.05999 -4.11931 0.20188 1.10050 1.34789 1.57095 2.67711 2.94491 3.30813 3.38961 3.45372 3.57888 3.94164 4.32749 4.40040 4.47124 4.72100 4.84943 4.95410 5.01504 5.18239 5.24354 5.43325 5.53086 5.67079 5.78873 5.84231 6.09050 6.10230 6.14849 6.16900 6.28720 6.31638 6.35026 6.41320 6.51394 6.78969 6.93784 6.97269 7.11449 7.58812 7.62020 7.65482 7.90615 8.11178 8.26195 8.91740 9.54083 10.98396 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018300 B = 0.003443 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.661472 B = 8130.319862 C = 8601.403650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.281 3.719 4 H 0.043 0.957 5 C -0.518 4.518 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.283 1.283 13 N -1.100 6.100 14 S 2.687 3.313 15 O -0.948 6.948 16 O -0.985 6.985 17 C -0.653 4.653 18 C -0.027 4.027 19 C -0.081 4.081 20 C -0.037 4.037 21 C -0.002 4.002 22 C -0.197 4.197 23 C 0.495 3.505 24 O -0.493 6.493 25 O -0.510 6.510 26 C -0.117 4.117 27 C -0.018 4.018 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.406 0.594 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.409 0.591 40 H 0.131 0.869 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.068 5.285 0.669 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.060 0.940 5 C -0.557 4.557 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.861 5.861 14 S 2.775 3.225 15 O -0.938 6.938 16 O -0.976 6.976 17 C -0.738 4.738 18 C -0.046 4.046 19 C -0.100 4.100 20 C -0.038 4.038 21 C -0.021 4.021 22 C -0.216 4.216 23 C 0.339 3.661 24 O -0.381 6.381 25 O -0.321 6.321 26 C -0.136 4.136 27 C -0.037 4.037 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.239 0.761 35 H 0.152 0.848 36 H 0.135 0.865 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.266 0.734 40 H 0.149 0.851 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.425 5.811 0.482 18.374 hybrid contribution 0.309 -0.158 0.153 0.379 sum -17.116 5.653 0.634 18.036 Atomic orbital electron populations 1.21834 0.99037 0.99362 1.00272 1.21883 0.91949 0.99486 1.03310 1.18557 0.94978 0.90225 0.78579 0.93959 1.21578 0.91391 1.37307 1.05466 0.91712 1.24894 0.98451 0.95016 0.95533 1.69849 1.34824 1.39126 1.09438 0.86454 0.85335 0.77466 0.78285 1.19631 1.21116 1.20921 1.55534 1.82797 1.30141 1.17646 1.02002 0.73796 0.73672 0.73024 1.93595 1.55147 1.71978 1.73085 1.93515 1.85447 1.83714 1.34882 1.31313 1.20001 1.14109 1.08353 1.20621 0.90946 0.93814 0.99261 1.21010 0.97831 0.98723 0.92450 1.19144 0.92804 0.98075 0.93753 1.22739 0.90498 0.91435 0.97384 1.22262 1.00734 1.02058 0.96529 1.21206 0.82205 0.78752 0.83933 1.91113 1.25293 1.58047 1.63690 1.85041 1.38272 1.63847 1.44942 1.21271 0.91289 1.01083 0.99928 1.20926 0.99510 0.91517 0.91783 0.94602 0.94313 0.93761 0.87570 0.94078 0.92826 0.76106 0.84834 0.86549 0.83031 0.83474 0.73436 0.85093 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.86 37.16 0.37 -2.29 16 2 C -0.13 -2.72 5.38 -26.73 -0.14 -2.86 16 3 C 0.28 6.49 2.15 -69.08 -0.15 6.35 16 4 H 0.04 1.04 7.60 -51.93 -0.39 0.64 16 5 C -0.52 -13.76 8.84 -34.44 -0.30 -14.06 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -23.98 11.29 55.43 0.63 -23.35 16 9 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -1.10 -21.99 4.86 -5.88 -0.03 -22.02 16 14 S 2.69 53.80 5.63 -107.50 -0.61 53.20 16 15 O -0.95 -22.20 16.90 -57.17 -0.97 -23.16 16 16 O -0.99 -20.50 17.40 -57.17 -1.00 -21.49 16 17 C -0.65 -11.58 5.84 -39.46 -0.23 -11.81 16 18 C -0.03 -0.43 9.50 -39.65 -0.38 -0.81 16 19 C -0.08 -1.13 6.71 -39.11 -0.26 -1.40 16 20 C -0.04 -0.48 4.42 -105.06 -0.46 -0.95 16 21 C 0.00 -0.02 9.80 -37.13 -0.36 -0.38 16 22 C -0.20 -1.59 10.04 -37.55 -0.38 -1.96 16 23 C 0.49 5.04 7.36 33.94 0.25 5.29 16 24 O -0.49 -6.81 13.09 -19.36 -0.25 -7.07 16 25 O -0.51 -3.96 13.56 -41.06 -0.56 -4.52 16 26 C -0.12 -1.65 9.80 -39.10 -0.38 -2.03 16 27 C -0.02 -0.31 9.24 -39.65 -0.37 -0.68 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.63 7.65 -51.93 -0.40 0.24 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 2.57 5.93 -51.93 -0.31 2.26 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.41 7.14 8.85 -34.47 -0.31 6.83 16 35 H 0.13 1.93 7.72 -52.49 -0.41 1.53 16 36 H 0.12 1.39 7.27 -52.48 -0.38 1.01 16 37 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.41 1.72 8.98 45.56 0.41 2.13 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.15 2.53 7.49 -52.49 -0.39 2.14 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -34.60 364.05 -9.47 -44.07 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.26 Total: 8.75 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -2.90 Total: -26.02 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.60 Total: -45.37 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -2.77 Total: -56.24 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 53.80 SS G_CDS: -0.61 Total: 53.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.60 -9.47 -44.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211541840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.293 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds