Wall clock time and date at job start Tue Mar 31 2020 23:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46950 * 2 1 4 4 H 1.08997 * 109.47357 * 305.89691 * 3 2 1 5 5 C 1.50700 * 109.47197 * 185.89540 * 3 2 1 6 6 H 1.08000 * 120.00354 * 240.00271 * 5 3 2 7 7 C 1.37877 * 119.99805 * 59.99668 * 5 3 2 8 8 N 1.31520 * 119.99917 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99971 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47173 * 120.00606 * 9 7 5 12 12 H 1.48501 * 109.46955 * 240.00593 * 9 7 5 13 13 N 1.46507 * 109.46937 * 65.89883 * 3 2 1 14 14 S 1.65600 * 119.99622 * 216.58536 * 13 3 2 15 15 O 1.42098 * 106.40483 * 311.60370 * 14 13 3 16 16 O 1.42106 * 106.39814 * 178.68504 * 14 13 3 17 17 C 1.76202 * 107.22023 * 65.14506 * 14 13 3 18 18 C 1.38407 * 119.82511 * 84.86297 * 17 14 13 19 19 C 1.37884 * 120.17217 * 179.97438 * 18 17 14 20 20 C 1.39850 * 119.82374 * 0.02562 * 19 18 17 21 21 C 1.47179 * 120.17224 * 179.97438 * 20 19 18 22 22 C 1.34923 * 119.99450 * 46.12428 * 21 20 19 23 23 C 1.46230 * 119.99950 * 11.26438 * 22 21 20 24 24 O 1.21623 * 120.00265 * 6.87059 * 23 22 21 25 25 O 1.34909 * 119.99561 * 186.87246 * 23 22 21 26 26 C 1.39859 * 119.66108 * 0.27661 * 20 19 18 27 27 C 1.37887 * 119.81849 * 359.42194 * 26 20 19 28 28 H 1.09003 * 109.46446 * 184.86773 * 1 2 3 29 29 H 1.08997 * 109.47238 * 304.86974 * 1 2 3 30 30 H 1.09001 * 109.46784 * 64.87223 * 1 2 3 31 31 H 1.08995 * 109.46857 * 239.99794 * 2 1 3 32 32 H 1.09004 * 109.46761 * 120.00173 * 2 1 3 33 33 H 0.96997 * 120.00079 * 179.97438 * 8 7 5 34 34 H 0.96991 * 119.99916 * 36.58259 * 13 3 2 35 35 H 1.08001 * 119.91469 * 0.02686 * 18 17 14 36 36 H 1.08004 * 120.08723 * 180.02562 * 19 18 17 37 37 H 1.07994 * 119.99894 * 226.39622 * 21 20 19 38 38 H 1.07995 * 119.99729 * 191.26556 * 22 21 20 39 39 H 0.96705 * 113.99970 * 179.97438 * 25 23 22 40 40 H 1.07992 * 120.08975 * 179.72057 * 26 20 19 41 41 H 1.07998 * 119.91586 * 180.29915 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5931 1.9859 -0.8324 5 6 3.5399 1.4451 -0.1459 6 1 4.1567 1.8856 0.6235 7 6 4.1249 0.8849 -1.2617 8 7 3.3739 0.3488 -2.1989 9 14 5.9842 0.8874 -1.4423 10 1 6.5955 1.5454 -0.2598 11 1 6.4741 -0.5111 -1.5385 12 1 6.3610 1.6296 -2.6722 13 7 1.6710 2.0909 1.2609 14 16 1.2364 3.6888 1.2740 15 8 2.2305 4.3811 0.5312 16 8 0.9113 4.0051 2.6207 17 6 -0.2600 3.8300 0.3545 18 6 -1.4746 3.5993 0.9768 19 6 -2.6500 3.7083 0.2643 20 6 -2.6126 4.0524 -1.0907 21 6 -3.8626 4.1703 -1.8588 22 6 -4.9098 4.8469 -1.3431 23 6 -4.7324 5.6666 -0.1452 24 8 -3.6195 5.8397 0.3139 25 8 -5.8031 6.2309 0.4507 26 6 -1.3810 4.2777 -1.7139 27 6 -0.2147 4.1708 -0.9861 28 1 -0.3632 -1.0240 0.0872 29 1 -0.3633 0.5875 0.8431 30 1 -0.3633 0.4364 -0.9304 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.7854 -0.0450 -2.9841 34 1 1.6812 1.5842 2.0879 35 1 -1.5019 3.3341 2.0234 36 1 -3.5971 3.5285 0.7513 37 1 -3.9430 3.7116 -2.8331 38 1 -5.8791 4.7831 -1.8151 39 1 -5.5868 6.7535 1.2350 40 1 -1.3438 4.5393 -2.7610 41 1 0.7370 4.3492 -1.4646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211541840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:20 Heat of formation + Delta-G solvation = -142.760249 kcal Electronic energy + Delta-G solvation = -27690.321375 eV Core-core repulsion = 23661.848066 eV Total energy + Delta-G solvation = -4028.473309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44448 -39.95975 -38.28604 -37.66984 -37.12946 -36.84562 -35.12999 -34.12919 -32.22545 -32.09397 -31.12649 -28.50863 -26.19376 -24.85778 -23.84616 -23.62473 -21.91602 -20.65797 -20.39417 -19.25174 -19.00050 -18.73046 -18.13630 -17.69297 -17.21087 -16.75497 -16.51205 -15.97813 -15.88395 -15.40064 -15.27128 -14.94284 -14.86402 -14.67404 -14.51511 -14.13852 -13.84808 -13.57137 -13.36149 -13.16098 -13.06775 -13.02229 -12.99909 -12.70329 -12.59813 -12.52807 -12.33072 -12.08113 -11.92662 -11.73413 -11.54992 -11.54206 -11.36532 -11.06777 -10.43185 -10.03254 -9.95115 -9.58308 -8.08625 -6.20649 -0.73154 -0.41128 0.31287 0.44506 1.41237 1.44803 1.55558 1.94980 2.20753 2.34563 2.46971 2.57588 2.88762 3.17658 3.44178 3.54726 3.82546 3.88518 4.25365 4.29870 4.42372 4.49078 4.49945 4.62633 4.71347 4.71739 4.86583 4.89834 4.93350 5.06895 5.12296 5.15980 5.27002 5.37211 5.42056 5.43010 5.55595 5.70251 5.82632 5.84392 6.03712 6.30042 6.46782 6.85396 6.95849 7.47210 8.93760 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018300 B = 0.003443 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.661472 B = 8130.319862 C = 8601.403650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.287 3.713 4 H 0.026 0.974 5 C -0.542 4.542 6 H 0.047 0.953 7 C 0.023 3.977 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.273 1.273 12 H -0.281 1.281 13 N -1.098 6.098 14 S 2.696 3.304 15 O -0.993 6.993 16 O -0.998 6.998 17 C -0.667 4.667 18 C -0.040 4.040 19 C -0.083 4.083 20 C -0.025 4.025 21 C -0.011 4.011 22 C -0.180 4.180 23 C 0.492 3.508 24 O -0.537 6.537 25 O -0.503 6.503 26 C -0.123 4.123 27 C -0.042 4.042 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.415 0.585 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.192 0.808 38 H 0.186 0.814 39 H 0.423 0.577 40 H 0.160 0.840 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.279 4.937 -0.252 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.182 3.818 4 H 0.043 0.957 5 C -0.582 4.582 6 H 0.066 0.934 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.207 1.207 13 N -0.858 5.858 14 S 2.789 3.211 15 O -0.983 6.983 16 O -0.988 6.988 17 C -0.756 4.756 18 C -0.059 4.059 19 C -0.101 4.101 20 C -0.025 4.025 21 C -0.029 4.029 22 C -0.198 4.198 23 C 0.338 3.662 24 O -0.430 6.430 25 O -0.315 6.315 26 C -0.141 4.141 27 C -0.061 4.061 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.250 0.750 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.209 0.791 38 H 0.203 0.797 39 H 0.283 0.717 40 H 0.178 0.822 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.618 5.456 -0.390 21.331 hybrid contribution 1.105 0.067 0.448 1.194 sum -19.514 5.523 0.058 20.280 Atomic orbital electron populations 1.21724 0.96113 1.01029 1.00703 1.21713 0.94560 0.97680 1.02127 1.18301 0.93078 0.91250 0.79149 0.95670 1.21867 0.93369 1.37508 1.05408 0.93419 1.25494 1.01824 0.94922 0.95434 1.69933 1.35909 1.39232 1.09579 0.85698 0.81429 0.77859 0.77808 1.20239 1.19853 1.20710 1.55284 1.83368 1.29948 1.17249 1.01292 0.74093 0.73080 0.72595 1.93530 1.57914 1.73017 1.73847 1.93482 1.85780 1.83795 1.35776 1.30680 1.18812 1.17547 1.08580 1.20812 0.90992 0.94198 0.99899 1.21311 0.97817 0.97889 0.93114 1.19619 0.94286 0.94956 0.93651 1.22979 0.88350 0.92894 0.98630 1.22640 1.01947 1.00231 0.94974 1.21730 0.81819 0.78396 0.84244 1.91115 1.26991 1.59742 1.65111 1.85017 1.37296 1.63627 1.45591 1.21597 0.90729 1.00601 1.01212 1.20957 1.00205 0.93020 0.91939 0.92396 0.92869 0.94196 0.90225 0.93693 0.92600 0.74958 0.84110 0.84358 0.79076 0.79698 0.71740 0.82209 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.86 71.98 0.71 -4.11 16 2 C -0.12 -5.23 5.38 30.60 0.16 -5.07 16 3 C 0.29 13.72 2.15 44.24 0.10 13.81 16 4 H 0.03 1.30 7.60 -2.39 -0.02 1.28 16 5 C -0.54 -29.79 8.84 25.60 0.23 -29.57 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.02 1.27 5.29 84.65 0.45 1.71 16 8 N -0.91 -49.49 11.29 21.45 0.24 -49.25 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -1.10 -45.37 4.86 -172.51 -0.84 -46.21 16 14 S 2.70 113.02 5.63 -56.49 -0.32 112.70 16 15 O -0.99 -49.47 16.90 -128.00 -2.16 -51.64 16 16 O -1.00 -42.83 17.40 -128.00 -2.23 -45.06 16 17 C -0.67 -24.26 5.84 22.35 0.13 -24.13 16 18 C -0.04 -1.24 9.50 22.23 0.21 -1.03 16 19 C -0.08 -2.14 6.71 22.58 0.15 -1.99 16 20 C -0.02 -0.57 4.42 -20.15 -0.09 -0.66 16 21 C -0.01 -0.14 9.80 23.86 0.23 0.09 16 22 C -0.18 -2.03 10.04 23.59 0.24 -1.80 16 23 C 0.49 8.44 7.36 69.90 0.51 8.96 16 24 O -0.54 -13.86 13.09 19.43 0.25 -13.60 16 25 O -0.50 -6.17 13.56 -58.24 -0.79 -6.96 16 26 C -0.12 -3.30 9.80 22.58 0.22 -3.08 16 27 C -0.04 -1.46 9.24 22.23 0.21 -1.25 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.68 7.65 -2.39 -0.02 1.66 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 3.91 5.93 -2.39 -0.01 3.90 16 32 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 34 H 0.42 15.01 8.85 -96.75 -0.86 14.15 16 35 H 0.14 4.04 7.72 -2.91 -0.02 4.02 16 36 H 0.14 2.90 7.27 -2.91 -0.02 2.88 16 37 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 39 H 0.42 2.51 8.98 -74.05 -0.66 1.84 16 40 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 41 H 0.13 4.78 7.49 -2.91 -0.02 4.76 16 Total: -1.00 -77.32 364.05 -0.79 -78.11 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -0.44 Total: 23.97 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 3.46 Total: -48.11 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -0.60 Total: -95.46 kcal Atomic # 8 Polarization: -112.34 SS G_CDS: -4.93 Total: -117.26 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 113.02 SS G_CDS: -0.32 Total: 112.70 kcal Total: -77.32 -0.79 -78.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211541840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.650 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds