Wall clock time and date at job start Tue Mar 31 2020 22:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00263 * 2 1 4 4 H 1.48504 * 109.46989 * 239.99890 * 3 2 1 5 5 H 1.48506 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47417 * 119.99682 * 3 2 1 7 7 C 1.37879 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00100 * 179.44683 * 7 2 1 9 9 C 1.50697 * 119.99743 * 359.71739 * 7 2 1 10 10 C 1.53002 * 115.55420 * 274.93758 * 9 7 2 11 11 S 1.81406 * 109.46915 * 294.54512 * 10 9 7 12 12 O 1.42097 * 110.54383 * 292.17609 * 11 10 9 13 13 O 1.42108 * 110.54052 * 68.92949 * 11 10 9 14 14 N 1.65600 * 104.45032 * 180.55105 * 11 10 9 15 15 C 1.46500 * 119.99754 * 64.99948 * 14 11 10 16 16 H 1.08996 * 109.47038 * 25.00159 * 15 14 11 17 17 C 1.50701 * 109.47220 * 264.99796 * 15 14 11 18 18 O 1.20829 * 120.00138 * 0.02562 * 17 15 14 19 19 O 1.34226 * 120.00010 * 179.97438 * 17 15 14 20 20 C 1.50703 * 109.46867 * 145.00235 * 15 14 11 21 21 C 1.38235 * 119.99900 * 39.72840 * 20 15 14 22 22 C 1.38236 * 119.99831 * 179.79130 * 21 20 15 23 23 C 1.38238 * 120.00089 * 0.43523 * 22 21 20 24 24 C 1.38240 * 119.99524 * 359.81813 * 23 22 21 25 25 C 1.38225 * 120.00080 * 359.97438 * 24 23 22 26 26 C 1.53005 * 117.49744 * 129.26803 * 9 7 2 27 27 C 1.53001 * 117.49865 * 60.60817 * 9 7 2 28 28 H 0.97002 * 119.99801 * 5.05381 * 1 2 3 29 29 H 1.08999 * 109.46922 * 54.54669 * 10 9 7 30 30 H 1.09000 * 109.47595 * 174.55162 * 10 9 7 31 31 H 0.96996 * 119.99938 * 245.00828 * 14 11 10 32 32 H 0.96699 * 116.99900 * 180.02562 * 19 17 15 33 33 H 1.07995 * 120.00121 * 359.97438 * 21 20 15 34 34 H 1.08002 * 119.99831 * 180.27682 * 22 21 20 35 35 H 1.07998 * 120.00061 * 179.83499 * 23 22 21 36 36 H 1.07997 * 119.99593 * 180.02562 * 24 23 22 37 37 H 1.08010 * 119.99827 * 180.02562 * 25 24 23 38 38 H 1.08998 * 117.49745 * 359.97438 * 26 9 7 39 39 H 1.09003 * 117.49645 * 145.02036 * 26 9 7 40 40 H 1.09007 * 117.50022 * 214.97606 * 27 9 7 41 41 H 1.08997 * 117.50069 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1942 -0.0085 9 6 1.2509 -2.4991 0.0076 10 6 0.8239 -3.0072 1.3861 11 16 2.2970 -3.4136 2.3637 12 8 2.9649 -4.5409 1.8140 13 8 3.0109 -2.2329 2.7039 14 7 1.6971 -3.9584 3.8079 15 6 0.9107 -5.1936 3.8552 16 1 1.1800 -5.8282 3.0110 17 6 -0.5567 -4.8578 3.7834 18 8 -0.9094 -3.7051 3.7007 19 8 -1.4718 -5.8394 3.8102 20 6 1.1968 -5.9222 5.1429 21 6 1.3420 -5.2132 6.3207 22 6 1.6002 -5.8820 7.5026 23 6 1.7221 -7.2590 7.5053 24 6 1.5820 -7.9675 6.3265 25 6 1.3196 -7.2991 5.1454 26 6 1.6371 -3.5435 -1.0418 27 6 0.3158 -2.7812 -1.1701 28 1 -0.4850 0.8368 -0.0740 29 1 0.2508 -2.2335 1.8970 30 1 0.2077 -3.8988 1.2699 31 1 1.8664 -3.4597 4.6224 32 1 -2.4007 -5.5751 3.7613 33 1 1.2509 -4.1371 6.3179 34 1 1.7092 -5.3284 8.4236 35 1 1.9264 -7.7812 8.4282 36 1 1.6768 -9.0433 6.3287 37 1 1.2098 -7.8527 4.2245 38 1 2.4359 -3.2865 -1.7375 39 1 1.5865 -4.5926 -0.7501 40 1 -0.6035 -3.3292 -0.9628 41 1 0.2453 -2.0228 -1.9497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263567707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:08 Heat of formation + Delta-G solvation = -104.530209 kcal Electronic energy + Delta-G solvation = -28085.684991 eV Core-core repulsion = 24058.869460 eV Total energy + Delta-G solvation = -4026.815530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69187 -39.23120 -36.74646 -36.47665 -36.28265 -35.36056 -35.11419 -31.99212 -31.34757 -30.92179 -28.18668 -27.27262 -25.41959 -22.90809 -22.79660 -21.21458 -21.12775 -19.79822 -18.79744 -18.24535 -17.66036 -17.13046 -16.76689 -16.41314 -15.89037 -15.77508 -15.10141 -14.96818 -14.77703 -14.56011 -14.31697 -13.80902 -13.61394 -13.49438 -13.13785 -13.02045 -12.71735 -11.94801 -11.82042 -11.74839 -11.54960 -11.39636 -11.33594 -11.29646 -11.20282 -11.03121 -11.00838 -10.86459 -10.59193 -10.45461 -10.11749 -9.85203 -9.48957 -9.15420 -9.03470 -8.98924 -8.50904 -8.08690 -6.08041 -4.20453 0.88645 1.05202 1.17191 2.08599 2.69412 3.27781 3.35670 3.38305 3.46209 3.65819 4.20661 4.41062 4.43579 4.58266 4.74497 4.79083 4.89063 4.91603 5.08440 5.18273 5.21183 5.23535 5.29366 5.51727 5.67624 5.69302 5.79832 6.00508 6.18942 6.25582 6.26328 6.28701 6.37822 6.41501 6.65038 6.71415 6.72394 6.97264 7.03106 7.26833 7.44016 7.78764 7.84593 8.22719 8.85197 9.50982 10.99061 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.003768 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.380961 B = 7428.495054 C = 7701.637640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.080 3.920 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.040 3.960 10 C -0.541 4.541 11 S 2.597 3.403 12 O -0.970 6.970 13 O -0.937 6.937 14 N -1.105 6.105 15 C 0.207 3.793 16 H 0.138 0.862 17 C 0.455 3.545 18 O -0.483 6.483 19 O -0.512 6.512 20 C -0.087 4.087 21 C -0.104 4.104 22 C -0.118 4.118 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.091 4.091 26 C -0.212 4.212 27 C -0.133 4.133 28 H 0.263 0.737 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.418 0.582 32 H 0.411 0.589 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 -15.514 12.923 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.125 4.125 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.086 0.914 9 C 0.037 3.963 10 C -0.675 4.675 11 S 2.695 3.305 12 O -0.960 6.960 13 O -0.927 6.927 14 N -0.860 5.860 15 C 0.096 3.904 16 H 0.155 0.845 17 C 0.293 3.707 18 O -0.368 6.368 19 O -0.323 6.323 20 C -0.089 4.089 21 C -0.123 4.123 22 C -0.136 4.136 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.110 4.110 26 C -0.250 4.250 27 C -0.173 4.173 28 H 0.073 0.927 29 H 0.160 0.840 30 H 0.108 0.892 31 H 0.253 0.747 32 H 0.270 0.730 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.337 -15.195 12.643 19.812 hybrid contribution -1.107 1.420 0.281 1.822 sum -2.444 -13.775 12.924 19.046 Atomic orbital electron populations 1.70001 1.05962 1.27220 1.47674 1.24957 0.94823 0.99218 0.93502 0.86656 0.79858 0.82429 0.79305 1.19984 1.21191 1.19297 1.20480 0.92789 0.88282 1.53457 0.91357 1.18324 1.00285 0.94168 0.83494 1.29972 1.16973 1.08702 1.11874 1.05594 0.77568 0.73980 0.73324 1.93508 1.71976 1.52457 1.78099 1.93580 1.69888 1.48080 1.81200 1.56148 1.67960 1.33561 1.28333 1.18943 0.84302 0.87255 0.99927 0.84466 1.24088 0.89938 0.83713 0.72972 1.90822 1.81494 1.21215 1.43299 1.84500 1.21156 1.41308 1.85380 1.19415 1.02527 0.94005 0.92945 1.21017 0.98958 1.00221 0.92096 1.21126 1.00032 0.94627 0.97856 1.21234 0.99355 0.94325 0.98283 1.21143 1.00026 1.00105 0.92415 1.21049 0.98003 0.92951 0.98999 1.23243 1.00243 0.95775 1.05718 1.22502 0.91111 1.01038 1.02604 0.92749 0.84028 0.89175 0.74742 0.72999 0.85679 0.85666 0.85884 0.85552 0.85073 0.89437 0.90783 0.91720 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.64 12.74 55.43 0.71 -23.94 16 2 C 0.08 2.23 5.42 -17.82 -0.10 2.13 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.26 7.96 -34.44 -0.27 -14.53 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.04 0.99 1.38 -155.66 -0.21 0.77 16 10 C -0.54 -11.84 4.64 37.16 0.17 -11.66 16 11 S 2.60 53.21 5.25 -107.50 -0.56 52.65 16 12 O -0.97 -20.67 17.39 -57.54 -1.00 -21.67 16 13 O -0.94 -22.61 17.45 -57.54 -1.00 -23.61 16 14 N -1.11 -17.24 4.80 -6.88 -0.03 -17.27 16 15 C 0.21 2.73 2.92 -70.23 -0.20 2.53 16 16 H 0.14 1.67 7.34 -51.93 -0.38 1.29 16 17 C 0.46 6.09 7.05 36.01 0.25 6.34 16 18 O -0.48 -8.04 15.72 -18.75 -0.29 -8.34 16 19 O -0.51 -5.14 13.34 -39.25 -0.52 -5.66 16 20 C -0.09 -1.00 4.88 -104.62 -0.51 -1.51 16 21 C -0.10 -1.12 9.16 -39.58 -0.36 -1.48 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 25 C -0.09 -0.90 9.67 -39.59 -0.38 -1.28 16 26 C -0.21 -4.69 9.96 -26.69 -0.27 -4.95 16 27 C -0.13 -3.09 9.25 -26.69 -0.25 -3.34 16 28 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 29 H 0.14 3.36 7.84 -51.92 -0.41 2.96 16 30 H 0.09 1.70 7.61 -51.92 -0.40 1.30 16 31 H 0.42 5.78 7.03 -34.47 -0.24 5.54 16 32 H 0.41 2.54 9.10 45.56 0.41 2.96 16 33 H 0.13 1.27 6.80 -52.49 -0.36 0.91 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.13 1.06 8.04 -52.48 -0.42 0.64 16 38 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.06 1.38 8.14 -51.92 -0.42 0.96 16 41 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -35.54 366.61 -9.83 -45.37 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -4.29 Total: 11.34 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -3.33 Total: -31.18 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.67 Total: -41.21 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -2.82 Total: -59.28 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 53.21 SS G_CDS: -0.56 Total: 52.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.54 -9.83 -45.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263567707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.159 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds