Wall clock time and date at job start Tue Mar 31 2020 22:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00263 * 2 1 4 4 H 1.48504 * 109.46989 * 239.99890 * 3 2 1 5 5 H 1.48506 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47417 * 119.99682 * 3 2 1 7 7 C 1.37879 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00100 * 179.44683 * 7 2 1 9 9 C 1.50697 * 119.99743 * 359.71739 * 7 2 1 10 10 C 1.53002 * 115.55420 * 274.93758 * 9 7 2 11 11 S 1.81406 * 109.46915 * 294.54512 * 10 9 7 12 12 O 1.42097 * 110.54383 * 292.17609 * 11 10 9 13 13 O 1.42108 * 110.54052 * 68.92949 * 11 10 9 14 14 N 1.65600 * 104.45032 * 180.55105 * 11 10 9 15 15 C 1.46500 * 119.99754 * 64.99948 * 14 11 10 16 16 H 1.08996 * 109.47038 * 25.00159 * 15 14 11 17 17 C 1.50701 * 109.47220 * 264.99796 * 15 14 11 18 18 O 1.20829 * 120.00138 * 0.02562 * 17 15 14 19 19 O 1.34226 * 120.00010 * 179.97438 * 17 15 14 20 20 C 1.50703 * 109.46867 * 145.00235 * 15 14 11 21 21 C 1.38235 * 119.99900 * 39.72840 * 20 15 14 22 22 C 1.38236 * 119.99831 * 179.79130 * 21 20 15 23 23 C 1.38238 * 120.00089 * 0.43523 * 22 21 20 24 24 C 1.38240 * 119.99524 * 359.81813 * 23 22 21 25 25 C 1.38225 * 120.00080 * 359.97438 * 24 23 22 26 26 C 1.53005 * 117.49744 * 129.26803 * 9 7 2 27 27 C 1.53001 * 117.49865 * 60.60817 * 9 7 2 28 28 H 0.97002 * 119.99801 * 5.05381 * 1 2 3 29 29 H 1.08999 * 109.46922 * 54.54669 * 10 9 7 30 30 H 1.09000 * 109.47595 * 174.55162 * 10 9 7 31 31 H 0.96996 * 119.99938 * 245.00828 * 14 11 10 32 32 H 0.96699 * 116.99900 * 180.02562 * 19 17 15 33 33 H 1.07995 * 120.00121 * 359.97438 * 21 20 15 34 34 H 1.08002 * 119.99831 * 180.27682 * 22 21 20 35 35 H 1.07998 * 120.00061 * 179.83499 * 23 22 21 36 36 H 1.07997 * 119.99593 * 180.02562 * 24 23 22 37 37 H 1.08010 * 119.99827 * 180.02562 * 25 24 23 38 38 H 1.08998 * 117.49745 * 359.97438 * 26 9 7 39 39 H 1.09003 * 117.49645 * 145.02036 * 26 9 7 40 40 H 1.09007 * 117.50022 * 214.97606 * 27 9 7 41 41 H 1.08997 * 117.50069 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1942 -0.0085 9 6 1.2509 -2.4991 0.0076 10 6 0.8239 -3.0072 1.3861 11 16 2.2970 -3.4136 2.3637 12 8 2.9649 -4.5409 1.8140 13 8 3.0109 -2.2329 2.7039 14 7 1.6971 -3.9584 3.8079 15 6 0.9107 -5.1936 3.8552 16 1 1.1800 -5.8282 3.0110 17 6 -0.5567 -4.8578 3.7834 18 8 -0.9094 -3.7051 3.7007 19 8 -1.4718 -5.8394 3.8102 20 6 1.1968 -5.9222 5.1429 21 6 1.3420 -5.2132 6.3207 22 6 1.6002 -5.8820 7.5026 23 6 1.7221 -7.2590 7.5053 24 6 1.5820 -7.9675 6.3265 25 6 1.3196 -7.2991 5.1454 26 6 1.6371 -3.5435 -1.0418 27 6 0.3158 -2.7812 -1.1701 28 1 -0.4850 0.8368 -0.0740 29 1 0.2508 -2.2335 1.8970 30 1 0.2077 -3.8988 1.2699 31 1 1.8664 -3.4597 4.6224 32 1 -2.4007 -5.5751 3.7613 33 1 1.2509 -4.1371 6.3179 34 1 1.7092 -5.3284 8.4236 35 1 1.9264 -7.7812 8.4282 36 1 1.6768 -9.0433 6.3287 37 1 1.2098 -7.8527 4.2245 38 1 2.4359 -3.2865 -1.7375 39 1 1.5865 -4.5926 -0.7501 40 1 -0.6035 -3.3292 -0.9628 41 1 0.2453 -2.0228 -1.9497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263567707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:07 Heat of formation + Delta-G solvation = -130.035820 kcal Electronic energy + Delta-G solvation = -28086.790997 eV Core-core repulsion = 24058.869460 eV Total energy + Delta-G solvation = -4027.921537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68051 -40.01044 -38.59311 -38.09652 -37.35689 -36.95432 -36.35228 -34.08172 -32.16118 -31.69994 -29.93012 -28.25741 -27.50264 -23.66118 -23.61738 -23.00122 -22.06235 -21.56762 -20.38473 -19.22413 -18.96328 -18.41819 -18.13941 -17.88617 -16.95545 -16.83229 -16.78591 -16.56936 -16.05954 -15.82262 -15.59914 -15.29266 -14.93170 -14.44685 -14.27450 -13.90343 -13.81460 -13.69928 -13.55226 -13.20743 -13.07244 -13.02224 -12.94578 -12.84620 -12.59493 -12.45516 -12.31445 -12.18042 -12.16396 -11.94030 -11.89114 -11.57661 -10.98434 -10.88161 -10.53522 -9.93451 -9.83714 -9.76809 -8.18337 -6.34907 -0.68623 0.27425 0.48744 1.05899 1.37285 1.41585 1.48481 1.54027 2.12641 2.39308 2.80758 2.89460 3.07609 3.24676 3.31751 3.37707 3.67431 3.91635 3.99756 4.07426 4.17960 4.24015 4.31412 4.38065 4.48305 4.59561 4.60950 4.72565 4.82712 4.95835 4.98720 5.14240 5.20500 5.43070 5.52502 5.53194 5.55260 5.59591 5.61125 5.71079 5.78585 6.06307 6.20436 6.72267 6.89355 7.37903 8.88150 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.003768 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.380961 B = 7428.495054 C = 7701.637640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.038 3.962 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.005 3.995 10 C -0.539 4.539 11 S 2.621 3.379 12 O -0.978 6.978 13 O -0.981 6.981 14 N -1.095 6.095 15 C 0.199 3.801 16 H 0.149 0.851 17 C 0.463 3.537 18 O -0.523 6.523 19 O -0.498 6.498 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.100 4.100 26 C -0.195 4.195 27 C -0.133 4.133 28 H 0.264 0.736 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.425 0.575 32 H 0.429 0.571 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -17.899 14.070 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.165 4.165 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.002 3.998 10 C -0.672 4.672 11 S 2.719 3.281 12 O -0.968 6.968 13 O -0.971 6.971 14 N -0.854 5.854 15 C 0.089 3.911 16 H 0.167 0.833 17 C 0.303 3.697 18 O -0.412 6.412 19 O -0.311 6.311 20 C -0.106 4.106 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.119 4.119 26 C -0.232 4.232 27 C -0.172 4.172 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.262 0.738 32 H 0.292 0.708 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.164 0.836 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.498 -17.597 13.773 22.397 hybrid contribution -1.097 2.005 0.025 2.285 sum -2.596 -15.593 13.798 20.982 Atomic orbital electron populations 1.70067 1.06711 1.27744 1.48528 1.25568 0.95614 1.01750 0.93535 0.85944 0.79064 0.79779 0.79108 1.18961 1.20021 1.20208 1.20702 0.92390 0.90252 1.53358 0.92951 1.18458 1.01627 0.94336 0.85354 1.29836 1.17889 1.09017 1.10499 1.04600 0.76829 0.73037 0.73672 1.93487 1.72128 1.52230 1.78940 1.93516 1.71202 1.50237 1.82174 1.55637 1.68350 1.34538 1.26829 1.19213 0.83994 0.86125 1.01782 0.83344 1.24051 0.90441 0.83376 0.71870 1.90824 1.82149 1.22777 1.45427 1.84449 1.22223 1.39945 1.84468 1.19351 1.04563 0.94727 0.91999 1.21145 1.00007 1.00282 0.92838 1.21404 0.99559 0.95435 0.97890 1.21626 0.97875 0.94036 0.99459 1.21510 0.98815 1.01540 0.91838 1.21312 0.97836 0.92329 1.00407 1.23304 0.99329 0.96584 1.03947 1.22437 0.92357 1.01019 1.01402 0.92719 0.86362 0.86430 0.73797 0.70843 0.86201 0.83940 0.83173 0.82860 0.83626 0.89486 0.88015 0.89913 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.33 12.74 21.45 0.27 -51.05 16 2 C 0.04 2.14 5.42 84.66 0.46 2.60 16 3 Si 0.94 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 7 C -0.53 -30.05 7.96 25.60 0.20 -29.85 16 8 H 0.05 3.05 7.81 -2.92 -0.02 3.02 16 9 C 0.00 0.23 1.38 -52.93 -0.07 0.15 16 10 C -0.54 -23.64 4.64 71.98 0.33 -23.30 16 11 S 2.62 107.71 5.25 -56.49 -0.30 107.42 16 12 O -0.98 -40.78 17.39 -127.65 -2.22 -43.00 16 13 O -0.98 -48.55 17.45 -127.65 -2.23 -50.78 16 14 N -1.10 -34.01 4.80 -175.68 -0.84 -34.85 16 15 C 0.20 5.03 2.92 43.50 0.13 5.16 16 16 H 0.15 3.36 7.34 -2.39 -0.02 3.34 16 17 C 0.46 11.90 7.05 71.24 0.50 12.40 16 18 O -0.52 -17.39 15.72 21.96 0.35 -17.04 16 19 O -0.50 -8.97 13.34 -51.38 -0.69 -9.66 16 20 C -0.10 -2.24 4.88 -19.87 -0.10 -2.34 16 21 C -0.12 -2.54 9.16 22.27 0.20 -2.34 16 22 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 23 C -0.11 -1.47 10.05 22.27 0.22 -1.25 16 24 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 25 C -0.10 -1.72 9.67 22.26 0.22 -1.50 16 26 C -0.19 -8.36 9.96 30.62 0.30 -8.06 16 27 C -0.13 -6.13 9.25 30.62 0.28 -5.84 16 28 H 0.26 14.45 8.32 -92.71 -0.77 13.68 16 29 H 0.12 5.78 7.84 -2.39 -0.02 5.76 16 30 H 0.12 4.32 7.61 -2.39 -0.02 4.30 16 31 H 0.42 11.97 7.03 -96.75 -0.68 11.29 16 32 H 0.43 4.41 9.10 -74.06 -0.67 3.73 16 33 H 0.12 2.45 6.80 -2.91 -0.02 2.43 16 34 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.15 1.95 8.04 -2.91 -0.02 1.92 16 38 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 39 H 0.10 3.77 8.14 -2.39 -0.02 3.76 16 40 H 0.08 3.45 8.14 -2.38 -0.02 3.43 16 41 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -77.10 366.61 -0.77 -77.87 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.27 Total: 31.12 kcal Atomic # 6 Polarization: -60.46 SS G_CDS: 3.13 Total: -57.32 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -0.57 Total: -85.90 kcal Atomic # 8 Polarization: -115.70 SS G_CDS: -4.79 Total: -120.49 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 107.71 SS G_CDS: -0.30 Total: 107.42 kcal Total: -77.10 -0.77 -77.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263567707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.167 kcal (2) G-P(sol) polarization free energy of solvation -77.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds