Wall clock time and date at job start Tue Mar 31 2020 22:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34708 * 117.00286 * 2 1 4 4 O 1.21469 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.47736 * 119.99903 * 179.97438 * 3 2 1 6 6 C 1.39644 * 120.14718 * 353.93804 * 5 3 2 7 7 C 1.37923 * 119.84320 * 179.97438 * 6 5 3 8 8 C 1.38390 * 120.15242 * 0.02943 * 7 6 5 9 9 S 1.76201 * 119.84952 * 179.97438 * 8 7 6 10 10 O 1.42100 * 106.40405 * 336.46157 * 9 8 7 11 11 O 1.42096 * 106.40426 * 203.53856 * 9 8 7 12 12 N 1.65610 * 107.21457 * 89.99968 * 9 8 7 13 13 C 1.36932 * 119.99947 * 90.00038 * 12 9 8 14 14 H 1.08005 * 120.00195 * 227.13400 * 13 12 9 15 15 C 1.38812 * 119.99784 * 47.13731 * 13 12 9 16 16 N 1.31620 * 120.00299 * 28.27543 * 15 13 12 17 17 Si 1.86808 * 119.99833 * 208.27365 * 15 13 12 18 18 H 1.48499 * 109.47159 * 89.99996 * 17 15 13 19 19 H 1.48500 * 109.47044 * 210.00320 * 17 15 13 20 20 H 1.48500 * 109.46887 * 329.99866 * 17 15 13 21 21 C 1.46499 * 119.99862 * 269.72434 * 12 9 8 22 22 C 1.53003 * 117.49796 * 193.20840 * 21 12 9 23 23 C 1.52999 * 117.49720 * 124.54875 * 21 12 9 24 24 C 1.38342 * 120.30238 * 0.22585 * 8 7 6 25 25 C 1.37969 * 120.14969 * 359.49717 * 24 8 7 26 26 C 1.50700 * 120.07831 * 180.23306 * 25 24 8 27 27 H 1.09004 * 109.46607 * 60.00315 * 1 2 3 28 28 H 1.08999 * 109.47566 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46950 * 300.00859 * 1 2 3 30 30 H 1.07998 * 120.08012 * 0.02562 * 6 5 3 31 31 H 1.08006 * 119.92592 * 179.97438 * 7 6 5 32 32 H 0.96996 * 119.99764 * 184.90404 * 16 15 13 33 33 H 1.08998 * 115.55081 * 338.87913 * 21 12 9 34 34 H 1.08999 * 117.49393 * 0.02562 * 22 21 12 35 35 H 1.08997 * 117.49789 * 145.01646 * 22 21 12 36 36 H 1.09003 * 117.49625 * 214.97181 * 23 21 12 37 37 H 1.08991 * 117.49886 * 359.97438 * 23 21 12 38 38 H 1.08000 * 119.92420 * 179.72219 * 24 8 7 39 39 H 1.09005 * 109.46707 * 264.13697 * 26 25 24 40 40 H 1.08996 * 109.47032 * 24.13115 * 26 25 24 41 41 H 1.08998 * 109.47718 * 144.13351 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2774 0.0006 6 6 4.3020 0.1150 0.1286 7 6 5.6789 0.1943 0.1279 8 6 6.3044 1.4222 0.0012 9 16 8.0640 1.5144 0.0019 10 8 8.5265 0.3518 0.6755 11 8 8.3967 2.8338 0.4112 12 7 8.5629 1.3729 -1.5710 13 6 8.7075 2.4921 -2.3466 14 1 8.2942 2.5148 -3.3443 15 6 9.3852 3.5974 -1.8508 16 7 10.3303 3.4395 -0.9484 17 14 8.9559 5.3088 -2.4642 18 1 7.8904 5.8888 -1.6078 19 1 10.1625 6.1725 -2.4063 20 1 8.4736 5.2256 -3.8662 21 6 8.8552 0.0510 -2.1306 22 6 9.5986 -0.0018 -3.4669 23 6 8.1111 -0.3575 -3.4036 24 6 5.5545 2.5783 -0.1208 25 6 4.1764 2.5129 -0.1272 26 6 3.3611 3.7727 -0.2655 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 3.8151 -0.8440 0.2272 31 1 6.2704 -0.7039 0.2272 32 1 10.7546 4.2154 -0.5497 33 1 9.0730 -0.7302 -1.4024 34 1 9.8706 0.9471 -3.9292 35 1 10.3053 -0.8178 -3.6177 36 1 7.8399 -1.4075 -3.5130 37 1 7.4039 0.3571 -3.8244 38 1 6.0490 3.5339 -0.2148 39 1 3.0665 4.1251 0.7231 40 1 3.9572 4.5387 -0.7614 41 1 2.4699 3.5657 -0.8579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266216511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:00 Heat of formation + Delta-G solvation = -87.698097 kcal Electronic energy + Delta-G solvation = -28119.832772 eV Core-core repulsion = 24093.747137 eV Total energy + Delta-G solvation = -4026.085635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67852 -38.62502 -37.24244 -36.54061 -35.77068 -34.23880 -33.36012 -32.46932 -31.40160 -30.71646 -28.02669 -26.74954 -25.04763 -23.98225 -21.78451 -21.62706 -20.92594 -20.54964 -18.99178 -17.88575 -17.28252 -17.01092 -16.48246 -16.12673 -15.92896 -15.24283 -15.06846 -14.52598 -14.30299 -14.04202 -13.87972 -13.72291 -13.33260 -12.98198 -12.89222 -12.71536 -12.36795 -12.21436 -12.09869 -11.94346 -11.72018 -11.53412 -11.17597 -10.95727 -10.93091 -10.88770 -10.69337 -10.53354 -10.43992 -10.34226 -10.27287 -10.06560 -9.66448 -9.46987 -8.99165 -8.68392 -8.52437 -7.66747 -6.62571 -4.24797 0.61795 1.59178 1.81527 2.49546 2.59966 3.18410 3.24247 3.27011 3.78894 4.07173 4.48296 4.65787 4.68871 4.82943 4.90559 4.93267 4.98756 4.99940 5.23802 5.30041 5.45621 5.61332 5.64197 5.67860 5.73171 5.80370 5.86371 5.94066 6.04349 6.08956 6.22268 6.26913 6.31251 6.37617 6.38409 6.65199 6.65755 6.71397 6.95590 7.09265 7.30154 7.40033 7.67602 8.10577 8.77746 9.19537 10.40208 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013741 B = 0.004382 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.193904 B = 6387.723371 C = 7198.406510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.502 6.502 5 C -0.112 4.112 6 C -0.086 4.086 7 C -0.057 4.057 8 C -0.617 4.617 9 S 2.549 3.451 10 O -1.008 7.008 11 O -0.943 6.943 12 N -0.783 5.783 13 C -0.278 4.278 14 H 0.085 0.915 15 C 0.064 3.936 16 N -0.763 5.763 17 Si 0.912 3.088 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.095 3.905 22 C -0.163 4.163 23 C -0.211 4.211 24 C -0.038 4.038 25 C -0.043 4.043 26 C -0.122 4.122 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.282 0.718 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 -5.115 -2.065 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.391 6.391 5 C -0.113 4.113 6 C -0.104 4.104 7 C -0.076 4.076 8 C -0.692 4.692 9 S 2.648 3.352 10 O -0.998 6.998 11 O -0.931 6.931 12 N -0.604 5.604 13 C -0.426 4.426 14 H 0.103 0.897 15 C -0.156 4.156 16 N -0.398 5.398 17 Si 0.737 3.263 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.014 4.014 22 C -0.203 4.203 23 C -0.251 4.251 24 C -0.057 4.057 25 C -0.044 4.044 26 C -0.178 4.178 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.162 0.838 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.409 -4.789 -0.962 12.411 hybrid contribution -1.218 0.719 -0.283 1.442 sum -12.627 -4.070 -1.245 13.325 Atomic orbital electron populations 1.23256 0.76246 1.03635 1.02539 1.86566 1.23341 1.32891 1.84427 1.21358 0.89231 0.81248 0.72634 1.90772 1.67032 1.35449 1.45878 1.18989 0.88305 0.95033 1.08983 1.21454 0.94230 0.97332 0.97430 1.20866 0.94038 0.97127 0.95563 1.33080 1.33767 0.97570 1.04801 1.11363 0.73594 0.73434 0.76831 1.93307 1.79959 1.51317 1.75173 1.93430 1.80590 1.37678 1.81431 1.52423 1.68008 1.07677 1.32270 1.19016 1.31542 0.92238 0.99771 0.89723 1.25628 0.92115 1.01225 0.96597 1.69934 1.14491 1.33529 1.21802 0.86162 0.78942 0.81882 0.79301 1.19316 1.20596 1.19110 1.21397 1.03028 0.87232 0.89777 1.23098 0.93450 1.03062 1.00662 1.23342 0.95759 1.00731 1.05309 1.20836 0.91919 0.98491 0.94426 1.20145 0.94342 0.93920 0.96022 1.21105 0.99978 0.93608 1.03095 0.91875 0.88071 0.91905 0.84625 0.84380 0.90704 0.86117 0.87328 0.89741 0.89750 0.88912 0.83757 0.90782 0.91597 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.56 9.84 -40.51 -0.40 -4.96 16 3 C 0.51 7.74 7.83 34.61 0.27 8.01 16 4 O -0.50 -8.12 13.12 -19.24 -0.25 -8.37 16 5 C -0.11 -1.86 5.87 -104.98 -0.62 -2.47 16 6 C -0.09 -1.36 9.62 -39.17 -0.38 -1.74 16 7 C -0.06 -1.03 9.50 -39.64 -0.38 -1.41 16 8 C -0.62 -12.73 5.98 -39.49 -0.24 -12.96 16 9 S 2.55 61.07 5.47 -107.50 -0.59 60.48 16 10 O -1.01 -25.58 16.01 -57.17 -0.92 -26.50 16 11 O -0.94 -25.14 13.27 -57.17 -0.76 -25.90 16 12 N -0.78 -17.94 3.08 -53.43 -0.16 -18.10 16 13 C -0.28 -6.52 7.58 -15.06 -0.11 -6.63 16 14 H 0.09 1.88 7.82 -52.48 -0.41 1.47 16 15 C 0.06 1.57 3.88 -17.43 -0.07 1.50 16 16 N -0.76 -20.10 11.67 55.49 0.65 -19.45 16 17 Si 0.91 19.10 29.64 -169.99 -5.04 14.06 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 C 0.09 1.88 6.43 -67.93 -0.44 1.44 16 22 C -0.16 -2.84 9.86 -26.69 -0.26 -3.10 16 23 C -0.21 -3.49 10.18 -26.69 -0.27 -3.76 16 24 C -0.04 -0.74 9.14 -39.64 -0.36 -1.11 16 25 C -0.04 -0.76 5.92 -104.21 -0.62 -1.38 16 26 C -0.12 -1.86 8.75 36.01 0.32 -1.55 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.14 1.76 7.63 -52.49 -0.40 1.36 16 31 H 0.14 2.33 7.60 -52.48 -0.40 1.93 16 32 H 0.28 7.07 8.32 -40.82 -0.34 6.73 16 33 H 0.12 2.35 7.31 -51.93 -0.38 1.97 16 34 H 0.11 2.02 7.11 -51.93 -0.37 1.65 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.58 8.08 -51.93 -0.42 1.16 16 38 H 0.14 2.86 7.60 -52.49 -0.40 2.46 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 41 H 0.09 1.37 5.82 -51.93 -0.30 1.07 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -30.38 358.71 -9.32 -39.69 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.17 Total: 7.40 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -2.08 Total: -23.75 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.48 Total: -37.56 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -2.33 Total: -65.72 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.04 Total: 14.06 kcal Atomic # 16 Polarization: 61.07 SS G_CDS: -0.59 Total: 60.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.38 -9.32 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266216511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.007 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds