Wall clock time and date at job start Tue Mar 31 2020 22:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86808 * 119.99980 * 2 1 4 4 H 1.48496 * 109.47362 * 270.00655 * 3 2 1 5 5 H 1.48505 * 109.46829 * 30.00641 * 3 2 1 6 6 H 1.48498 * 109.47111 * 150.00028 * 3 2 1 7 7 C 1.38797 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47244 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 11 16 16 H 1.09007 * 109.46819 * 304.99736 * 15 14 13 17 17 O 1.42897 * 109.47468 * 64.99730 * 15 14 13 18 18 C 1.50703 * 109.47229 * 185.00050 * 15 14 13 19 19 O 1.20825 * 119.99623 * 244.99724 * 18 15 14 20 20 O 1.34220 * 120.00005 * 64.99486 * 18 15 14 21 21 C 1.45205 * 116.99972 * 179.97438 * 20 18 15 22 22 C 1.50697 * 109.47531 * 180.02562 * 21 20 18 23 23 C 1.38241 * 120.00240 * 269.73280 * 22 21 20 24 24 C 1.38227 * 119.99949 * 179.76457 * 23 22 21 25 25 C 1.38242 * 120.00190 * 0.48218 * 24 23 22 26 26 C 1.38231 * 119.99678 * 359.78695 * 25 24 23 27 27 C 1.38233 * 119.99894 * 89.99866 * 22 21 20 28 28 H 0.97000 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46868 * 59.99725 * 10 9 7 30 30 H 1.09002 * 109.46818 * 299.99575 * 10 9 7 31 31 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 33 33 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 34 34 H 0.96693 * 113.99928 * 59.99743 * 17 15 14 35 35 H 1.09003 * 109.46942 * 300.00362 * 21 20 18 36 36 H 1.09002 * 109.46739 * 59.99780 * 21 20 18 37 37 H 1.07999 * 119.99420 * 359.97438 * 23 22 21 38 38 H 1.07995 * 120.00083 * 180.25030 * 24 23 22 39 39 H 1.07999 * 119.99679 * 179.76941 * 25 24 23 40 40 H 1.08005 * 119.99643 * 179.97438 * 26 25 24 41 41 H 1.08006 * 120.00363 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3026 0.0001 12 8 0.7911 -5.5023 0.0010 13 7 2.8442 -6.3431 -0.0003 14 6 2.3305 -7.7150 0.0063 15 6 3.5025 -8.6985 0.0050 16 1 4.1564 -8.4833 -0.8402 17 8 4.2383 -8.5644 1.2226 18 6 2.9770 -10.1061 -0.1120 19 8 3.1309 -10.8859 0.7980 20 8 2.3381 -10.4933 -1.2270 21 6 1.8594 -11.8635 -1.2704 22 6 1.1739 -12.1148 -2.5887 23 6 -0.1835 -11.8864 -2.7166 24 6 -0.8113 -12.1123 -3.9271 25 6 -0.0837 -12.5761 -5.0072 26 6 1.2726 -12.8098 -4.8778 27 6 1.9014 -12.5790 -3.6685 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1244 -3.7313 -0.8906 31 1 3.8010 -6.1834 -0.0006 32 1 1.7258 -7.8722 0.8996 33 1 1.7179 -7.8780 -0.8804 34 1 3.7180 -8.7417 2.0181 35 1 2.7023 -12.5464 -1.1636 36 1 1.1535 -12.0277 -0.4562 37 1 -0.7527 -11.5283 -1.8715 38 1 -1.8709 -11.9300 -4.0282 39 1 -0.5750 -12.7561 -5.9520 40 1 1.8410 -13.1725 -5.7215 41 1 2.9611 -12.7619 -3.5674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272998638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:15 Heat of formation + Delta-G solvation = -147.945050 kcal Electronic energy + Delta-G solvation = -25193.073292 eV Core-core repulsion = 21164.375153 eV Total energy + Delta-G solvation = -4028.698139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18691 -39.66376 -39.23132 -37.76243 -36.58156 -34.28941 -32.69456 -32.43520 -31.34199 -30.74770 -28.82849 -26.90748 -25.51516 -24.27197 -23.03558 -21.98045 -21.52011 -20.47190 -18.59374 -18.11786 -17.87082 -17.20706 -17.03195 -16.50007 -16.08669 -15.95228 -15.53091 -15.26039 -15.03248 -14.80750 -14.73195 -14.02351 -13.90972 -13.84640 -13.42203 -13.37365 -13.15719 -12.99630 -12.82542 -12.57675 -12.35894 -11.80941 -11.63015 -11.56518 -11.37499 -11.10116 -11.06707 -11.03112 -10.79358 -10.61352 -9.82740 -9.49996 -9.34837 -9.30032 -9.09214 -9.02535 -8.25337 -6.51304 -6.22391 -3.93147 0.70951 0.97716 1.61566 2.17186 2.96410 3.02375 3.22323 3.26460 3.30439 3.39687 3.57614 3.85850 4.08549 4.15818 4.19872 4.31508 4.39191 4.52568 4.58965 4.69154 4.73939 4.89006 5.06161 5.10618 5.12919 5.19179 5.34085 5.43599 5.49624 5.59523 5.68035 5.86181 5.87279 6.01520 6.08255 6.09517 6.12646 6.42901 6.52946 6.90534 7.24028 7.58677 7.60628 8.34695 8.52283 9.23070 10.85019 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.001946 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.163159 B =14384.791967 C =15703.360899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.733 5.733 14 C 0.097 3.903 15 C 0.111 3.889 16 H 0.147 0.853 17 O -0.527 6.527 18 C 0.440 3.560 19 O -0.497 6.497 20 O -0.345 6.345 21 C 0.109 3.891 22 C -0.101 4.101 23 C -0.092 4.092 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.095 4.095 28 H 0.268 0.732 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.404 0.596 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.390 0.610 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 -27.557 -6.385 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.390 6.390 13 N -0.389 5.389 14 C -0.028 4.028 15 C 0.050 3.950 16 H 0.164 0.836 17 O -0.333 6.333 18 C 0.281 3.719 19 O -0.383 6.383 20 O -0.262 6.262 21 C 0.036 3.964 22 C -0.101 4.101 23 C -0.110 4.110 24 C -0.140 4.140 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.113 4.113 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.239 0.761 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.240 0.760 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.022 -27.911 -6.512 28.942 hybrid contribution 1.939 0.978 0.382 2.205 sum 5.962 -26.933 -6.130 28.258 Atomic orbital electron populations 1.70016 1.05955 1.27469 1.46857 1.24998 0.95038 0.99056 0.94529 0.86160 0.79415 0.81528 0.78351 1.20264 1.20768 1.19675 1.22864 0.94932 0.91594 1.58960 0.90863 1.85399 1.04866 0.96373 1.96738 1.23524 1.06656 0.94993 1.05151 1.20353 0.86423 0.86239 0.74967 1.90715 1.15361 1.85547 1.47349 1.45839 1.10441 1.04358 1.78300 1.21792 0.94615 0.81904 1.04490 1.21763 0.95267 0.86779 0.91217 0.83612 1.86666 1.40328 1.91270 1.15034 1.24566 0.75192 0.91779 0.80343 1.90708 1.53648 1.54372 1.39617 1.86612 1.66914 1.32263 1.40366 1.21871 0.98737 0.80141 0.95700 1.19469 0.94027 1.02136 0.94492 1.21144 0.93947 0.97787 0.98166 1.21214 1.00393 0.99456 0.92898 1.21286 0.94379 0.98083 0.98857 1.21175 0.94991 1.00557 0.97482 1.21087 0.99736 0.98069 0.92415 0.92177 0.89013 0.89027 0.76087 0.90592 0.89128 0.75978 0.90076 0.89961 0.85568 0.85503 0.85736 0.85664 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.00 6.16 36.00 0.22 -2.77 16 11 C 0.53 9.57 7.85 -10.98 -0.09 9.48 16 12 O -0.52 -11.35 15.86 5.56 0.09 -11.27 16 13 N -0.73 -9.09 5.50 -60.29 -0.33 -9.42 16 14 C 0.10 1.02 5.29 -4.04 -0.02 1.00 16 15 C 0.11 0.93 3.52 -27.88 -0.10 0.83 16 16 H 0.15 0.95 8.14 -51.92 -0.42 0.53 16 17 O -0.53 -4.66 12.94 -55.14 -0.71 -5.38 16 18 C 0.44 4.27 7.27 36.01 0.26 4.53 16 19 O -0.50 -5.91 16.07 -25.46 -0.41 -6.32 16 20 O -0.34 -3.26 10.17 -39.23 -0.40 -3.66 16 21 C 0.11 0.88 5.59 36.00 0.20 1.08 16 22 C -0.10 -0.82 5.52 -104.62 -0.58 -1.40 16 23 C -0.09 -0.73 9.70 -39.58 -0.38 -1.12 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 25 C -0.11 -0.72 10.05 -39.58 -0.40 -1.12 16 26 C -0.12 -0.83 10.05 -39.58 -0.40 -1.22 16 27 C -0.09 -0.69 9.70 -39.58 -0.38 -1.08 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 31 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 34 H 0.39 2.72 8.79 45.56 0.40 3.12 16 35 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -36.62 381.46 -8.94 -45.55 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.55 Total: 3.51 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.86 Total: -5.91 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.40 Total: -34.72 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -1.43 Total: -26.63 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.62 -8.94 -45.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272998638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.392 kcal (2) G-P(sol) polarization free energy of solvation -36.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds