Wall clock time and date at job start Tue Mar 31 2020 22:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86808 * 119.99980 * 2 1 4 4 H 1.48496 * 109.47362 * 270.00655 * 3 2 1 5 5 H 1.48505 * 109.46829 * 30.00641 * 3 2 1 6 6 H 1.48498 * 109.47111 * 150.00028 * 3 2 1 7 7 C 1.38797 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47244 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 11 16 16 H 1.09007 * 109.46819 * 304.99736 * 15 14 13 17 17 O 1.42897 * 109.47468 * 64.99730 * 15 14 13 18 18 C 1.50703 * 109.47229 * 185.00050 * 15 14 13 19 19 O 1.20825 * 119.99623 * 244.99724 * 18 15 14 20 20 O 1.34220 * 120.00005 * 64.99486 * 18 15 14 21 21 C 1.45205 * 116.99972 * 179.97438 * 20 18 15 22 22 C 1.50697 * 109.47531 * 180.02562 * 21 20 18 23 23 C 1.38241 * 120.00240 * 269.73280 * 22 21 20 24 24 C 1.38227 * 119.99949 * 179.76457 * 23 22 21 25 25 C 1.38242 * 120.00190 * 0.48218 * 24 23 22 26 26 C 1.38231 * 119.99678 * 359.78695 * 25 24 23 27 27 C 1.38233 * 119.99894 * 89.99866 * 22 21 20 28 28 H 0.97000 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46868 * 59.99725 * 10 9 7 30 30 H 1.09002 * 109.46818 * 299.99575 * 10 9 7 31 31 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 33 33 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 34 34 H 0.96693 * 113.99928 * 59.99743 * 17 15 14 35 35 H 1.09003 * 109.46942 * 300.00362 * 21 20 18 36 36 H 1.09002 * 109.46739 * 59.99780 * 21 20 18 37 37 H 1.07999 * 119.99420 * 359.97438 * 23 22 21 38 38 H 1.07995 * 120.00083 * 180.25030 * 24 23 22 39 39 H 1.07999 * 119.99679 * 179.76941 * 25 24 23 40 40 H 1.08005 * 119.99643 * 179.97438 * 26 25 24 41 41 H 1.08006 * 120.00363 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3026 0.0001 12 8 0.7911 -5.5023 0.0010 13 7 2.8442 -6.3431 -0.0003 14 6 2.3305 -7.7150 0.0063 15 6 3.5025 -8.6985 0.0050 16 1 4.1564 -8.4833 -0.8402 17 8 4.2383 -8.5644 1.2226 18 6 2.9770 -10.1061 -0.1120 19 8 3.1309 -10.8859 0.7980 20 8 2.3381 -10.4933 -1.2270 21 6 1.8594 -11.8635 -1.2704 22 6 1.1739 -12.1148 -2.5887 23 6 -0.1835 -11.8864 -2.7166 24 6 -0.8113 -12.1123 -3.9271 25 6 -0.0837 -12.5761 -5.0072 26 6 1.2726 -12.8098 -4.8778 27 6 1.9014 -12.5790 -3.6685 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1244 -3.7313 -0.8906 31 1 3.8010 -6.1834 -0.0006 32 1 1.7258 -7.8722 0.8996 33 1 1.7179 -7.8780 -0.8804 34 1 3.7180 -8.7417 2.0181 35 1 2.7023 -12.5464 -1.1636 36 1 1.1535 -12.0277 -0.4562 37 1 -0.7527 -11.5283 -1.8715 38 1 -1.8709 -11.9300 -4.0282 39 1 -0.5750 -12.7561 -5.9520 40 1 1.8410 -13.1725 -5.7215 41 1 2.9611 -12.7619 -3.5674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272998638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:14 Heat of formation + Delta-G solvation = -173.728971 kcal Electronic energy + Delta-G solvation = -25194.191366 eV Core-core repulsion = 21164.375153 eV Total energy + Delta-G solvation = -4029.816214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96166 -40.65605 -40.11593 -38.55933 -37.41193 -35.42889 -34.56786 -33.28913 -31.89989 -31.85781 -30.03518 -27.73808 -27.49608 -25.20499 -23.55750 -22.64107 -22.20675 -21.74786 -19.90356 -19.35902 -18.73393 -18.15470 -17.72531 -17.67224 -17.05707 -16.90866 -16.86305 -16.34056 -16.12316 -15.87990 -15.71147 -15.68785 -14.74523 -14.56281 -14.43067 -14.36435 -14.16803 -14.01218 -13.94175 -13.43102 -13.28830 -13.14891 -13.05936 -12.87429 -12.60602 -12.24862 -12.12046 -12.04415 -11.75367 -11.73554 -11.43816 -11.12852 -10.96550 -10.25885 -10.22858 -9.88256 -9.85552 -8.64871 -8.33316 -6.10967 0.14724 0.44348 0.82431 1.26950 1.43743 1.43944 1.52908 1.59206 1.61694 2.23533 2.29513 2.84420 3.00968 3.07707 3.32337 3.34873 3.47974 3.72336 3.76226 3.83432 4.00275 4.08547 4.19417 4.22997 4.29396 4.32884 4.52139 4.54848 4.56649 4.59234 4.67952 4.98129 5.09339 5.15357 5.28689 5.43938 5.49335 5.54399 5.56842 6.02367 6.21550 6.26811 6.43545 6.52869 7.08303 7.20213 8.75785 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.001946 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.163159 B =14384.791967 C =15703.360899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.564 6.564 13 N -0.705 5.705 14 C 0.099 3.901 15 C 0.127 3.873 16 H 0.172 0.828 17 O -0.532 6.532 18 C 0.445 3.555 19 O -0.520 6.520 20 O -0.349 6.349 21 C 0.107 3.893 22 C -0.115 4.115 23 C -0.110 4.110 24 C -0.133 4.133 25 C -0.114 4.114 26 C -0.130 4.130 27 C -0.104 4.104 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.421 0.579 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.094 -27.922 -7.138 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.361 5.361 14 C -0.026 4.026 15 C 0.066 3.934 16 H 0.189 0.811 17 O -0.340 6.340 18 C 0.287 3.713 19 O -0.409 6.409 20 O -0.266 6.266 21 C 0.034 3.966 22 C -0.115 4.115 23 C -0.128 4.128 24 C -0.151 4.151 25 C -0.132 4.132 26 C -0.147 4.147 27 C -0.122 4.122 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.259 0.741 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.249 0.751 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.472 -28.314 -7.266 29.939 hybrid contribution 1.215 0.923 0.589 1.636 sum 7.688 -27.390 -6.677 29.222 Atomic orbital electron populations 1.70182 1.07954 1.28569 1.48089 1.26129 0.95971 1.03334 0.93819 0.84956 0.78206 0.76057 0.78779 1.19308 1.20435 1.18178 1.23208 0.95392 0.91970 1.58709 0.89804 1.85575 1.10578 0.99269 1.97062 1.23367 1.03574 0.94027 1.07101 1.20049 0.86104 0.86607 0.74948 1.90709 1.17396 1.86044 1.49999 1.45496 1.10683 1.04018 1.75871 1.21854 0.95594 0.80985 1.04183 1.21699 0.94534 0.85190 0.92001 0.81126 1.86657 1.40665 1.91134 1.15506 1.24749 0.74583 0.92022 0.79938 1.90702 1.54599 1.55206 1.40378 1.86609 1.66673 1.33086 1.40233 1.21971 0.99044 0.79615 0.95951 1.19568 0.94229 1.02937 0.94785 1.21322 0.94261 0.98438 0.98774 1.21471 1.01263 0.99502 0.92894 1.21611 0.94640 0.97435 0.99513 1.21498 0.95259 1.00045 0.97926 1.21336 1.00527 0.97897 0.92463 0.92035 0.87042 0.86851 0.74068 0.91033 0.89545 0.75077 0.89312 0.89992 0.85409 0.84267 0.83741 0.83559 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.69 13.22 21.65 0.29 -55.40 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.28 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 7 C -0.54 -30.73 9.50 67.95 0.65 -30.08 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.30 20.57 -56.49 -1.16 -9.47 16 10 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 11 C 0.54 18.70 7.85 87.65 0.69 19.39 16 12 O -0.56 -25.08 15.86 -3.04 -0.05 -25.13 16 13 N -0.71 -15.92 5.50 -463.05 -2.55 -18.46 16 14 C 0.10 1.92 5.29 86.38 0.46 2.38 16 15 C 0.13 1.82 3.52 29.85 0.11 1.93 16 16 H 0.17 1.64 8.14 -2.38 -0.02 1.62 16 17 O -0.53 -8.12 12.94 -129.95 -1.68 -9.80 16 18 C 0.44 8.02 7.27 71.24 0.52 8.54 16 19 O -0.52 -11.87 16.07 28.39 0.46 -11.41 16 20 O -0.35 -6.28 10.17 -51.32 -0.52 -6.81 16 21 C 0.11 1.69 5.59 71.24 0.40 2.09 16 22 C -0.12 -1.82 5.52 -19.87 -0.11 -1.93 16 23 C -0.11 -1.75 9.70 22.27 0.22 -1.53 16 24 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 25 C -0.11 -1.38 10.05 22.27 0.22 -1.16 16 26 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 27 C -0.10 -1.41 9.70 22.27 0.22 -1.20 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 30 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 31 H 0.42 6.85 8.47 -92.71 -0.79 6.06 16 32 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.09 1.85 8.12 -2.38 -0.02 1.83 16 34 H 0.40 4.81 8.79 -74.06 -0.65 4.16 16 35 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 36 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 37 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -80.71 381.46 1.16 -79.56 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.36 Total: 19.48 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.71 Total: -7.84 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -2.26 Total: -73.87 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -1.80 Total: -53.14 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.47 kcal Total: -80.71 1.16 -79.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272998638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.172 kcal (2) G-P(sol) polarization free energy of solvation -80.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds