Wall clock time and date at job start Tue Mar 31 2020 22:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 120.00294 * 2 1 4 4 H 1.48501 * 109.47088 * 269.99912 * 3 2 1 5 5 H 1.48498 * 109.47216 * 29.99508 * 3 2 1 6 6 H 1.48498 * 109.47228 * 149.99789 * 3 2 1 7 7 C 1.38806 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00317 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99714 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00101 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47212 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00285 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00107 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00077 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47064 * 179.97438 * 14 13 11 16 16 H 1.09007 * 109.47268 * 59.99435 * 15 14 13 17 17 O 1.42905 * 109.46640 * 299.99846 * 15 14 13 18 18 C 1.50696 * 109.47094 * 179.97438 * 15 14 13 19 19 O 1.20825 * 119.99897 * 114.99849 * 18 15 14 20 20 O 1.34227 * 119.99883 * 294.99597 * 18 15 14 21 21 C 1.45205 * 116.99929 * 180.02562 * 20 18 15 22 22 C 1.50701 * 109.46997 * 180.02562 * 21 20 18 23 23 C 1.38235 * 119.99808 * 89.99829 * 22 21 20 24 24 C 1.38243 * 119.99602 * 179.97438 * 23 22 21 25 25 C 1.38231 * 120.00070 * 0.07188 * 24 23 22 26 26 C 1.38234 * 119.99892 * 359.90902 * 25 24 23 27 27 C 1.38230 * 119.99865 * 269.97574 * 22 21 20 28 28 H 0.97006 * 119.99796 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46546 * 60.00109 * 10 9 7 30 30 H 1.09000 * 109.46775 * 300.00561 * 10 9 7 31 31 H 0.97006 * 119.99654 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.47104 * 59.99746 * 14 13 11 33 33 H 1.09001 * 109.46970 * 299.99311 * 14 13 11 34 34 H 0.96698 * 113.99800 * 299.99379 * 17 15 14 35 35 H 1.08993 * 109.47592 * 59.99660 * 21 20 18 36 36 H 1.09001 * 109.46728 * 299.99506 * 21 20 18 37 37 H 1.08000 * 120.00616 * 359.70324 * 23 22 21 38 38 H 1.08001 * 119.99556 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.99633 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.99751 * 180.02562 * 26 25 24 41 41 H 1.08001 * 120.00371 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2328 0.0039 12 8 6.3439 -2.2966 0.0035 13 7 6.0455 -4.4949 0.0045 14 6 7.4905 -4.7360 0.0064 15 6 7.7561 -6.2428 0.0074 16 1 7.3142 -6.6903 -0.8829 17 8 7.1739 -6.8283 1.1738 18 6 9.2425 -6.4909 0.0088 19 8 9.7649 -7.0260 0.9578 20 8 9.9862 -6.1174 -1.0444 21 6 11.4110 -6.3882 -0.9745 22 6 12.0771 -5.9026 -2.2361 23 6 12.5611 -4.6097 -2.3085 24 6 13.1726 -4.1645 -3.4656 25 6 13.2987 -5.0115 -4.5507 26 6 12.8150 -6.3044 -4.4780 27 6 12.2045 -6.7501 -3.3206 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4323 -0.8874 30 1 3.6431 -3.4311 0.8926 31 1 5.4288 -5.2437 0.0045 32 1 7.9323 -4.2890 0.8970 33 1 7.9346 -4.2891 -0.8830 34 1 7.5209 -6.4769 2.0052 35 1 11.5723 -7.4608 -0.8678 36 1 11.8377 -5.8695 -0.1160 37 1 12.4577 -3.9461 -1.4627 38 1 13.5504 -3.1543 -3.5223 39 1 13.7761 -4.6635 -5.4547 40 1 12.9140 -6.9664 -5.3257 41 1 11.8263 -7.7601 -3.2641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272998640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:18 Heat of formation + Delta-G solvation = -147.610449 kcal Electronic energy + Delta-G solvation = -25240.447436 eV Core-core repulsion = 21211.763807 eV Total energy + Delta-G solvation = -4028.683630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22737 -39.71473 -39.33651 -37.81670 -36.62780 -34.36266 -32.73381 -32.44638 -31.37678 -30.85354 -28.95416 -26.95340 -25.63613 -24.35111 -23.07089 -22.01558 -21.55806 -20.57734 -18.64600 -18.17570 -17.90708 -17.23521 -17.07026 -16.58618 -16.12105 -16.05842 -15.59327 -15.30744 -15.11621 -14.93410 -14.83356 -14.06198 -13.90385 -13.79174 -13.46297 -13.43341 -13.28751 -13.08415 -12.86322 -12.80120 -12.40103 -11.94110 -11.66479 -11.60120 -11.42245 -11.28146 -11.13746 -11.01772 -10.74703 -10.56503 -9.87293 -9.62574 -9.38354 -9.33999 -9.15143 -9.00584 -8.52061 -6.93465 -6.29639 -4.01708 0.67416 0.94143 1.57541 2.12968 2.72083 2.89004 3.19827 3.32358 3.37083 3.49494 3.56226 3.81307 4.03687 4.10629 4.28138 4.32147 4.35187 4.47707 4.55303 4.65835 4.70317 4.72173 4.85712 5.02678 5.09335 5.15672 5.18876 5.28385 5.46149 5.47717 5.55996 5.74368 5.82428 5.98029 5.99601 6.04759 6.05937 6.32916 6.49417 6.86437 7.19976 7.49743 7.93393 8.39013 8.41332 9.16361 10.79519 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.002043 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.655726 B =13701.921772 C =15146.527155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.089 0.911 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.731 5.731 14 C 0.097 3.903 15 C 0.111 3.889 16 H 0.147 0.853 17 O -0.526 6.526 18 C 0.440 3.560 19 O -0.496 6.496 20 O -0.345 6.345 21 C 0.109 3.891 22 C -0.101 4.101 23 C -0.093 4.093 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.095 4.095 28 H 0.271 0.729 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.406 0.594 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.390 0.610 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.274 -16.460 -5.657 31.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.107 0.893 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.387 5.387 14 C -0.028 4.028 15 C 0.050 3.950 16 H 0.164 0.836 17 O -0.332 6.332 18 C 0.281 3.719 19 O -0.383 6.383 20 O -0.262 6.262 21 C 0.035 3.965 22 C -0.101 4.101 23 C -0.111 4.111 24 C -0.140 4.140 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.113 4.113 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.242 0.758 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.240 0.760 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 27.258 -15.288 -5.802 31.787 hybrid contribution -0.595 -0.465 0.399 0.855 sum 26.663 -15.753 -5.403 31.437 Atomic orbital electron populations 1.69940 1.05903 1.27767 1.47999 1.24722 0.94466 0.98981 0.93200 0.86729 0.81877 0.83279 0.79920 1.19214 1.19949 1.15937 1.22312 0.88193 0.97563 1.58826 0.89319 1.84791 1.09392 0.99937 1.97446 1.23269 0.93604 1.04473 1.06050 1.20319 0.90753 0.81963 0.75070 1.90712 1.58752 1.42179 1.47583 1.45783 1.06299 1.08613 1.78015 1.21786 0.83858 0.92617 1.04543 1.21762 0.85718 0.94939 0.92615 0.83566 1.86673 1.64038 1.66724 1.15793 1.24558 0.91324 0.75429 0.80596 1.90712 1.73428 1.38992 1.35136 1.86611 1.21607 1.74772 1.43198 1.21873 0.76764 1.01534 0.96280 1.19470 1.00587 0.95037 0.95041 1.21143 0.96828 0.94636 0.98462 1.21214 0.99482 1.00082 0.93218 1.21286 0.98786 0.93921 0.98602 1.21179 0.98813 0.96298 0.97896 1.21090 0.97960 0.99702 0.92526 0.91933 0.88292 0.88245 0.75841 0.90620 0.89043 0.75955 0.90040 0.89974 0.85590 0.85521 0.85729 0.85641 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.39 13.97 55.49 0.78 -25.62 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.31 6.16 36.00 0.22 -2.09 16 11 C 0.53 8.99 7.85 -10.99 -0.09 8.91 16 12 O -0.52 -10.74 15.86 5.56 0.09 -10.65 16 13 N -0.73 -8.50 5.45 -60.30 -0.33 -8.83 16 14 C 0.10 0.96 5.31 -4.04 -0.02 0.93 16 15 C 0.11 0.87 3.58 -27.88 -0.10 0.77 16 16 H 0.15 0.89 8.14 -51.93 -0.42 0.46 16 17 O -0.53 -4.42 12.74 -55.12 -0.70 -5.12 16 18 C 0.44 4.08 7.27 36.00 0.26 4.34 16 19 O -0.50 -5.73 16.07 -25.46 -0.41 -6.14 16 20 O -0.35 -3.12 10.20 -39.25 -0.40 -3.52 16 21 C 0.11 0.84 5.59 36.01 0.20 1.04 16 22 C -0.10 -0.79 5.52 -104.63 -0.58 -1.36 16 23 C -0.09 -0.70 9.70 -39.58 -0.38 -1.08 16 24 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 25 C -0.11 -0.69 10.05 -39.59 -0.40 -1.08 16 26 C -0.12 -0.79 10.05 -39.58 -0.40 -1.18 16 27 C -0.09 -0.66 9.70 -39.59 -0.38 -1.05 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 30 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.41 3.76 8.35 -40.82 -0.34 3.42 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.39 2.58 8.79 45.56 0.40 2.98 16 35 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -36.23 378.52 -8.41 -44.64 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.58 Total: 3.14 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.85 Total: -4.98 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.45 Total: -34.45 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.42 Total: -25.44 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.23 -8.41 -44.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272998640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.968 kcal (2) G-P(sol) polarization free energy of solvation -36.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds