Wall clock time and date at job start Tue Mar 31 2020 22:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30305 * 126.34163 * 2 1 4 4 N 1.28524 * 110.07735 * 179.97438 * 3 2 1 5 5 C 1.31279 * 109.86182 * 0.02562 * 4 3 2 6 6 S 1.76192 * 126.48644 * 180.02562 * 5 4 3 7 7 C 1.81001 * 100.00087 * 359.97375 * 6 5 4 8 8 C 1.52998 * 109.47073 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47487 * 59.99718 * 8 7 6 10 10 O 1.42896 * 109.46957 * 299.99685 * 8 7 6 11 11 C 1.50699 * 109.47034 * 179.97438 * 8 7 6 12 12 H 1.08007 * 119.99813 * 359.97438 * 11 8 7 13 13 C 1.37874 * 120.00350 * 179.97438 * 11 8 7 14 14 N 1.31519 * 119.99590 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00374 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46853 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46938 * 120.00095 * 15 13 11 18 18 H 1.48507 * 109.47046 * 240.00171 * 15 13 11 19 19 N 1.36542 * 107.03065 * 359.97438 * 5 4 3 20 20 C 1.46500 * 127.14594 * 179.97438 * 19 5 4 21 21 C 1.53000 * 109.46902 * 90.02479 * 20 19 5 22 22 C 1.50701 * 109.46993 * 180.02562 * 21 20 19 23 23 C 1.33388 * 125.20764 * 90.00231 * 22 21 20 24 24 C 1.38416 * 114.92574 * 179.97438 * 23 22 21 25 25 C 1.33394 * 114.91996 * 359.97438 * 24 23 22 26 26 S 1.75881 * 109.59317 * 359.75832 * 25 24 23 27 27 H 1.08994 * 109.46858 * 90.02796 * 1 2 3 28 28 H 1.09001 * 109.46950 * 210.02557 * 1 2 3 29 29 H 1.08998 * 109.46965 * 330.02675 * 1 2 3 30 30 H 1.09000 * 109.46608 * 299.99574 * 7 6 5 31 31 H 1.08995 * 109.46795 * 60.00035 * 7 6 5 32 32 H 0.96705 * 114.00312 * 300.00046 * 10 8 7 33 33 H 0.97001 * 119.99425 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47403 * 210.02576 * 20 19 5 35 35 H 1.08999 * 109.46802 * 330.03239 * 20 19 5 36 36 H 1.08997 * 109.47413 * 299.99777 * 21 20 19 37 37 H 1.09004 * 109.47212 * 60.00584 * 21 20 19 38 38 H 1.08006 * 122.53555 * 359.95343 * 23 22 21 39 39 H 1.08003 * 122.53816 * 180.02562 * 24 23 22 40 40 H 1.08004 * 125.19881 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5954 -0.6206 0.0004 6 16 5.0749 -1.5773 0.0016 7 6 6.3068 -0.2512 0.0021 8 6 7.7107 -0.8593 0.0026 9 1 7.8403 -1.4751 -0.8874 10 8 7.8796 -1.6668 1.1693 11 6 8.7363 0.2449 0.0024 12 1 8.4185 1.2771 0.0016 13 6 10.0804 -0.0626 0.0033 14 7 10.4673 -1.3196 0.0037 15 14 11.3517 1.3060 0.0038 16 1 10.6627 2.6216 0.0026 17 1 12.2007 1.1924 1.2168 18 1 12.2022 1.1921 -1.2082 19 7 2.3175 -1.1016 0.0002 20 6 1.9010 -2.5061 -0.0005 21 6 1.7555 -2.9957 1.4418 22 6 1.3277 -4.4407 1.4411 23 6 2.1544 -5.4875 1.4411 24 6 1.5308 -6.7232 1.4409 25 6 0.1976 -6.6800 1.4413 26 16 -0.3382 -5.0048 1.4489 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 6.1782 0.3645 -0.8881 31 1 6.1769 0.3648 0.8919 32 1 7.7779 -1.1831 2.0006 33 1 11.4129 -1.5359 0.0047 34 1 0.9446 -2.6013 -0.5146 35 1 2.6512 -3.1073 -0.5142 36 1 2.7119 -2.9006 1.9559 37 1 1.0054 -2.3945 1.9556 38 1 3.2290 -5.3790 1.4409 39 1 2.0820 -7.6520 1.4413 40 1 -0.4532 -7.5420 1.4416 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287480250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:20 Heat of formation + Delta-G solvation = 50.595757 kcal Electronic energy + Delta-G solvation = -23681.926923 eV Core-core repulsion = 20136.883781 eV Total energy + Delta-G solvation = -3545.043141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.76838 -38.39554 -36.05357 -35.86237 -32.59935 -32.21447 -32.15798 -29.81981 -28.38218 -27.70286 -25.34558 -25.06272 -23.06019 -22.43100 -21.30822 -20.52473 -19.57754 -17.85716 -17.39527 -17.13135 -16.28439 -16.08392 -15.70686 -14.95237 -14.67201 -14.41838 -14.27463 -14.04835 -13.87510 -13.64714 -13.31504 -13.19864 -12.99808 -12.78380 -12.61376 -12.56265 -12.38349 -11.65519 -11.57526 -11.44176 -11.23407 -11.07627 -10.94909 -10.91448 -10.54023 -10.32633 -10.17084 -9.88003 -9.61650 -9.21800 -9.00364 -8.81561 -8.65764 -8.36141 -7.25126 -6.09560 -4.28641 0.60841 1.25352 1.44654 1.63287 1.72002 2.40104 2.57909 2.76790 2.93429 3.25049 3.33594 3.38574 4.20733 4.26589 4.35284 4.44907 4.52557 4.73309 4.78019 4.84038 5.05793 5.18110 5.20432 5.23771 5.31642 5.39943 5.52581 5.59276 5.79544 5.84520 5.85667 5.96003 6.02342 6.08033 6.16064 6.17092 6.67834 6.75293 7.50717 7.75522 8.00740 8.72976 8.78701 9.24074 9.47351 10.94625 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.002747 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.210461 B =10188.725164 C =12003.717201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.287 5.287 4 N -0.295 5.295 5 C 0.167 3.833 6 S -0.009 6.009 7 C -0.111 4.111 8 C 0.244 3.756 9 H 0.067 0.933 10 O -0.560 6.560 11 C -0.567 4.567 12 H 0.062 0.938 13 C 0.081 3.919 14 N -0.857 5.857 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 N -0.468 5.468 20 C 0.114 3.886 21 C -0.063 4.063 22 C -0.177 4.177 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.212 4.212 26 S 0.091 5.909 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.349 0.651 33 H 0.262 0.738 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.877 -9.792 2.220 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 N -0.127 5.127 4 N -0.139 5.139 5 C -0.207 4.207 6 S 0.221 5.779 7 C -0.260 4.260 8 C 0.184 3.816 9 H 0.084 0.916 10 O -0.362 6.362 11 C -0.607 4.607 12 H 0.080 0.920 13 C -0.126 4.126 14 N -0.493 5.493 15 Si 0.721 3.279 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.208 1.208 19 N -0.164 5.164 20 C -0.010 4.010 21 C -0.104 4.104 22 C -0.295 4.295 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.347 4.347 26 S 0.354 5.646 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.193 0.807 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -24.502 -9.428 1.758 26.312 hybrid contribution 1.388 0.390 0.325 1.478 sum -23.114 -9.038 2.083 24.906 Atomic orbital electron populations 1.20164 0.83969 1.04214 1.03800 1.24992 0.96675 0.82577 1.06071 1.73929 0.96784 1.24094 1.17895 1.74748 1.11502 1.06883 1.20734 1.27423 0.91314 0.95650 1.06337 1.85836 0.89336 1.11009 1.91702 1.24912 0.97187 0.97692 1.06241 1.19256 0.84457 0.90944 0.86913 0.91565 1.86579 1.94522 1.39744 1.15384 1.21533 0.90888 0.92883 1.55361 0.91983 1.25031 0.98546 0.95480 0.93569 1.70088 1.15848 1.16757 1.46563 0.86518 0.81309 0.82287 0.77750 1.19501 1.20769 1.20777 1.46446 1.05133 1.07957 1.56820 1.21922 1.03055 0.78020 0.97962 1.20447 1.03881 0.89680 0.96349 1.24167 0.95827 0.98489 1.10974 1.20320 1.01684 0.91159 1.02524 1.20240 0.93711 0.99115 1.03093 1.25637 0.99050 0.99513 1.10524 1.84248 1.07108 0.99830 1.73402 0.89808 0.90763 0.88742 0.89057 0.89561 0.80656 0.92833 0.88389 0.87743 0.88315 0.89998 0.83532 0.83980 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.09 36.01 0.36 -0.14 16 2 C 0.17 2.27 8.07 -153.99 -1.24 1.03 16 3 N -0.29 -5.14 12.18 33.00 0.40 -4.73 16 4 N -0.30 -5.81 11.60 30.68 0.36 -5.45 16 5 C 0.17 2.87 8.07 -88.34 -0.71 2.16 16 6 S -0.01 -0.15 21.45 -107.50 -2.31 -2.46 16 7 C -0.11 -2.31 4.87 37.16 0.18 -2.13 16 8 C 0.24 5.97 2.87 -27.88 -0.08 5.89 16 9 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 10 O -0.56 -13.69 12.32 -35.23 -0.43 -14.13 16 11 C -0.57 -15.17 8.76 -34.44 -0.30 -15.47 16 12 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 13 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 14 N -0.86 -24.64 12.84 55.43 0.71 -23.93 16 15 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 N -0.47 -6.33 2.81 -113.54 -0.32 -6.65 16 20 C 0.11 1.10 5.74 -4.04 -0.02 1.08 16 21 C -0.06 -0.57 6.03 -27.88 -0.17 -0.73 16 22 C -0.18 -1.51 5.76 -36.00 -0.21 -1.71 16 23 C -0.13 -1.11 10.05 -41.21 -0.41 -1.52 16 24 C -0.13 -1.01 10.18 -41.21 -0.42 -1.43 16 25 C -0.21 -1.49 11.23 29.04 0.33 -1.17 16 26 S 0.09 0.67 23.33 -107.50 -2.51 -1.84 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.44 7.93 -51.93 -0.41 0.03 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.93 8.14 -51.92 -0.42 1.51 16 31 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 32 H 0.35 7.63 9.04 45.56 0.41 8.04 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.10 0.72 7.88 -51.93 -0.41 0.31 16 35 H 0.10 1.05 7.86 -51.93 -0.41 0.64 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -32.80 374.43 -10.86 -43.66 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.59 Total: 6.08 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.80 Total: -12.05 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 1.15 Total: -40.77 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.43 Total: -14.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -4.81 Total: -4.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.80 -10.86 -43.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287480250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.254 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds