Wall clock time and date at job start Tue Mar 31 2020 22:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 119.99851 * 2 1 4 4 N 1.46502 * 109.47452 * 128.16878 * 3 2 1 5 5 C 1.46497 * 119.99799 * 63.19064 * 4 3 2 6 6 C 1.50703 * 109.47030 * 85.00341 * 5 4 3 7 7 H 1.07994 * 119.99898 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99931 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99917 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00333 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.46871 * 89.99587 * 10 8 6 12 12 H 1.48494 * 109.47412 * 209.99686 * 10 8 6 13 13 H 1.48501 * 109.46963 * 330.00203 * 10 8 6 14 14 S 1.65601 * 120.00215 * 243.19519 * 4 3 2 15 15 O 1.42102 * 106.40215 * 223.09481 * 14 4 3 16 16 O 1.42105 * 106.40147 * 356.01428 * 14 4 3 17 17 C 1.76201 * 107.21718 * 109.55149 * 14 4 3 18 18 C 1.38392 * 119.84473 * 113.15299 * 17 14 4 19 19 C 1.37925 * 120.15067 * 179.72668 * 18 17 14 20 20 C 1.39648 * 119.84632 * 0.56305 * 19 18 17 21 21 C 1.47725 * 120.15126 * 179.72821 * 20 19 18 22 22 O 1.21474 * 119.99877 * 179.97438 * 21 20 19 23 23 O 1.34707 * 119.99837 * 359.97438 * 21 20 19 24 24 C 1.39610 * 119.69805 * 359.71037 * 20 19 18 25 25 C 1.37961 * 119.85015 * 359.97438 * 24 20 19 26 26 C 1.50700 * 119.92420 * 180.02562 * 25 24 20 27 27 H 1.08000 * 119.99900 * 4.98792 * 1 2 3 28 28 H 1.08004 * 119.99902 * 184.98161 * 1 2 3 29 29 H 1.07993 * 119.99903 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47644 * 8.17031 * 3 2 1 31 31 H 1.08994 * 109.47258 * 248.16839 * 3 2 1 32 32 H 1.08997 * 109.47054 * 204.99982 * 5 4 3 33 33 H 1.08997 * 109.47534 * 325.00506 * 5 4 3 34 34 H 0.96998 * 120.00025 * 180.02562 * 9 8 6 35 35 H 1.08006 * 119.92298 * 359.97438 * 18 17 14 36 36 H 1.07998 * 120.07582 * 180.27480 * 19 18 17 37 37 H 0.96702 * 116.99758 * 179.97438 * 23 21 20 38 38 H 1.08006 * 120.07369 * 180.02562 * 24 20 19 39 39 H 1.09004 * 109.46951 * 277.86266 * 26 25 24 40 40 H 1.08989 * 109.47918 * 37.86781 * 26 25 24 41 41 H 1.09003 * 109.47115 * 157.86954 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0469 1.3013 1.0859 5 6 4.1419 0.3282 1.0790 6 6 5.2796 0.8581 0.2447 7 1 5.1955 1.8233 -0.2322 8 6 6.4282 0.1110 0.0913 9 7 7.4213 0.5736 -0.6363 10 14 6.5740 -1.5584 0.9168 11 1 6.0645 -2.6100 0.0003 12 1 7.9982 -1.8292 1.2379 13 1 5.7747 -1.5631 2.1684 14 16 2.9206 2.3970 2.3212 15 8 4.2349 2.8785 2.5663 16 8 1.8300 3.2470 1.9937 17 6 2.4406 1.5047 3.7627 18 6 3.3171 1.3942 4.8280 19 6 2.9457 0.7020 5.9617 20 6 1.6865 0.1020 6.0284 21 6 1.2841 -0.6461 7.2370 22 8 0.1879 -1.1666 7.2922 23 8 2.1328 -0.7511 8.2778 24 6 0.8095 0.2126 4.9478 25 6 1.1913 0.9135 3.8225 26 6 0.2457 1.0345 2.6553 27 1 -0.5400 0.9318 -0.0813 28 1 -0.5400 -0.9318 0.0812 29 1 1.8500 -0.9353 0.0004 30 1 1.3642 2.1284 0.1461 31 1 2.5761 1.4287 -0.9539 32 1 4.4865 0.1618 2.0996 33 1 3.7892 -0.6127 0.6567 34 1 8.2292 0.0479 -0.7446 35 1 4.2926 1.8544 4.7730 36 1 3.6290 0.6202 6.7941 37 1 1.8248 -1.2500 9.0468 38 1 -0.1661 -0.2487 4.9931 39 1 0.3073 0.1348 2.0431 40 1 -0.7730 1.1542 3.0238 41 1 0.5191 1.9021 2.0547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291867967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:56 Heat of formation + Delta-G solvation = -98.162121 kcal Electronic energy + Delta-G solvation = -28190.478851 eV Core-core repulsion = 24163.939462 eV Total energy + Delta-G solvation = -4026.539389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74118 -39.09652 -37.23585 -36.62901 -36.44131 -35.43676 -33.54776 -32.96523 -32.08981 -31.64082 -28.16105 -27.14320 -25.52583 -25.04793 -22.31170 -22.15927 -21.46798 -19.62330 -18.69086 -18.26669 -17.67247 -17.26814 -17.23782 -16.71205 -16.10852 -15.96904 -15.24508 -14.80195 -14.70399 -14.25228 -14.24037 -14.10025 -13.73779 -13.47794 -13.30711 -12.92824 -12.76420 -12.59065 -12.39551 -12.24396 -11.91957 -11.87999 -11.58473 -11.50306 -11.43254 -11.25320 -11.18837 -11.10506 -10.73578 -10.53028 -10.48754 -10.25768 -9.66043 -9.54789 -9.26720 -8.80418 -8.64766 -8.25868 -6.12893 -4.12314 0.06226 0.75736 1.10464 2.08198 2.33528 2.61677 3.19977 3.24226 3.27397 3.30444 3.53039 4.04941 4.32234 4.39774 4.58884 4.64946 4.82535 4.97635 5.05786 5.13829 5.21960 5.32427 5.33653 5.50251 5.53569 5.62815 5.68704 5.82697 5.85959 5.93976 6.03760 6.09639 6.13945 6.17255 6.23225 6.56256 6.57516 6.73096 6.82130 6.97299 7.20515 7.49681 7.50991 8.43364 8.94543 9.45447 11.00538 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010649 B = 0.004840 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.704600 B = 5784.029740 C = 6773.031921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.140 3.860 4 N -0.970 5.970 5 C 0.225 3.775 6 C -0.529 4.529 7 H 0.082 0.918 8 C 0.076 3.924 9 N -0.892 5.892 10 Si 0.866 3.134 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.265 1.265 14 S 2.685 3.315 15 O -0.932 6.932 16 O -0.967 6.967 17 C -0.646 4.646 18 C -0.029 4.029 19 C -0.093 4.093 20 C -0.081 4.081 21 C 0.528 3.472 22 O -0.509 6.509 23 O -0.508 6.508 24 C -0.084 4.084 25 C 0.016 3.984 26 C -0.187 4.187 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.265 0.735 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.416 0.584 38 H 0.144 0.856 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.863 -2.560 11.304 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.176 4.176 3 C 0.015 3.985 4 N -0.809 5.809 5 C 0.102 3.898 6 C -0.568 4.568 7 H 0.101 0.899 8 C -0.128 4.128 9 N -0.530 5.530 10 Si 0.692 3.308 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.190 1.190 14 S 2.773 3.227 15 O -0.922 6.922 16 O -0.957 6.957 17 C -0.730 4.730 18 C -0.048 4.048 19 C -0.112 4.112 20 C -0.082 4.082 21 C 0.372 3.628 22 O -0.398 6.398 23 O -0.320 6.320 24 C -0.102 4.102 25 C 0.015 3.985 26 C -0.243 4.243 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.173 0.827 36 H 0.164 0.836 37 H 0.274 0.726 38 H 0.162 0.838 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.665 -1.639 10.897 17.554 hybrid contribution -0.064 -2.129 1.480 2.594 sum -13.729 -3.768 12.377 18.865 Atomic orbital electron populations 1.23838 0.95823 1.02069 1.01831 1.23461 0.95914 1.00102 0.98101 1.20476 0.90496 0.95358 0.92153 1.57137 1.36360 1.53259 1.34142 1.19498 0.84431 0.88148 0.97693 1.21330 0.98218 1.06416 1.30812 0.89947 1.24836 0.95499 0.97643 0.94774 1.69882 1.05874 1.38068 1.39161 0.87020 0.78089 0.85052 0.80589 1.19981 1.20787 1.18976 1.02374 0.73658 0.73620 0.73032 1.93628 1.36685 1.77005 1.84845 1.93453 1.55037 1.63689 1.83548 1.31569 1.02672 1.17397 1.21338 1.21098 0.98868 0.93916 0.90902 1.21537 0.95031 0.95913 0.98752 1.19270 0.96347 1.00270 0.92305 1.20911 0.81721 0.77300 0.82876 1.90895 1.22373 1.45091 1.81484 1.84573 1.48252 1.71334 1.27819 1.21211 0.99706 0.97830 0.91481 1.19548 0.92476 0.91308 0.95213 1.22233 0.98874 1.06754 0.96436 0.88162 0.88446 0.86671 0.88739 0.88846 0.95359 0.94781 0.92471 0.82697 0.83578 0.72553 0.83839 0.87681 0.89915 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.05 11.08 29.01 0.32 -1.73 16 2 C -0.16 -2.02 7.94 -36.03 -0.29 -2.31 16 3 C 0.14 2.17 5.50 -5.19 -0.03 2.14 16 4 N -0.97 -18.04 2.80 -116.95 -0.33 -18.37 16 5 C 0.23 4.89 4.17 -5.19 -0.02 4.87 16 6 C -0.53 -14.16 9.94 -34.44 -0.34 -14.50 16 7 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 8 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 10 Si 0.87 20.15 27.47 -169.99 -4.67 15.48 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 14 S 2.68 49.54 4.83 -107.50 -0.52 49.02 16 15 O -0.93 -20.55 16.59 -57.17 -0.95 -21.50 16 16 O -0.97 -17.61 13.70 -57.17 -0.78 -18.40 16 17 C -0.65 -10.24 5.92 -39.49 -0.23 -10.48 16 18 C -0.03 -0.42 9.53 -39.64 -0.38 -0.80 16 19 C -0.09 -1.17 9.62 -39.17 -0.38 -1.55 16 20 C -0.08 -1.03 5.87 -104.98 -0.62 -1.64 16 21 C 0.53 6.13 8.27 34.61 0.29 6.41 16 22 O -0.51 -7.00 17.13 -19.25 -0.33 -7.33 16 23 O -0.51 -4.24 12.68 -40.51 -0.51 -4.75 16 24 C -0.08 -1.08 9.27 -39.17 -0.36 -1.44 16 25 C 0.02 0.22 5.87 -104.69 -0.61 -0.39 16 26 C -0.19 -2.29 7.77 36.01 0.28 -2.01 16 27 H 0.10 0.94 7.88 -52.49 -0.41 0.53 16 28 H 0.10 0.86 8.06 -52.48 -0.42 0.44 16 29 H 0.12 1.55 7.12 -52.49 -0.37 1.18 16 30 H 0.09 1.32 5.64 -51.93 -0.29 1.03 16 31 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.03 0.62 7.05 -51.93 -0.37 0.25 16 33 H 0.03 0.69 6.26 -51.93 -0.32 0.37 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.16 2.19 7.32 -52.48 -0.38 1.81 16 36 H 0.15 1.46 7.61 -52.49 -0.40 1.07 16 37 H 0.42 1.47 9.11 45.56 0.42 1.88 16 38 H 0.14 1.63 7.65 -52.48 -0.40 1.23 16 39 H 0.11 1.18 4.34 -51.93 -0.23 0.96 16 40 H 0.08 0.82 8.13 -51.94 -0.42 0.40 16 41 H 0.11 1.44 3.28 -51.93 -0.17 1.27 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -34.32 350.08 -8.31 -42.62 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.79 Total: 5.07 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -2.47 Total: -21.44 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.45 Total: -44.05 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -2.58 Total: -51.98 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Atomic # 16 Polarization: 49.54 SS G_CDS: -0.52 Total: 49.02 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.32 -8.31 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291867967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.540 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds