Wall clock time and date at job start Tue Mar 31 2020 22:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 119.99851 * 2 1 4 4 N 1.46502 * 109.47452 * 128.16878 * 3 2 1 5 5 C 1.46497 * 119.99799 * 63.19064 * 4 3 2 6 6 C 1.50703 * 109.47030 * 85.00341 * 5 4 3 7 7 H 1.07994 * 119.99898 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99931 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99917 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00333 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.46871 * 89.99587 * 10 8 6 12 12 H 1.48494 * 109.47412 * 209.99686 * 10 8 6 13 13 H 1.48501 * 109.46963 * 330.00203 * 10 8 6 14 14 S 1.65601 * 120.00215 * 243.19519 * 4 3 2 15 15 O 1.42102 * 106.40215 * 223.09481 * 14 4 3 16 16 O 1.42105 * 106.40147 * 356.01428 * 14 4 3 17 17 C 1.76201 * 107.21718 * 109.55149 * 14 4 3 18 18 C 1.38392 * 119.84473 * 113.15299 * 17 14 4 19 19 C 1.37925 * 120.15067 * 179.72668 * 18 17 14 20 20 C 1.39648 * 119.84632 * 0.56305 * 19 18 17 21 21 C 1.47725 * 120.15126 * 179.72821 * 20 19 18 22 22 O 1.21474 * 119.99877 * 179.97438 * 21 20 19 23 23 O 1.34707 * 119.99837 * 359.97438 * 21 20 19 24 24 C 1.39610 * 119.69805 * 359.71037 * 20 19 18 25 25 C 1.37961 * 119.85015 * 359.97438 * 24 20 19 26 26 C 1.50700 * 119.92420 * 180.02562 * 25 24 20 27 27 H 1.08000 * 119.99900 * 4.98792 * 1 2 3 28 28 H 1.08004 * 119.99902 * 184.98161 * 1 2 3 29 29 H 1.07993 * 119.99903 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47644 * 8.17031 * 3 2 1 31 31 H 1.08994 * 109.47258 * 248.16839 * 3 2 1 32 32 H 1.08997 * 109.47054 * 204.99982 * 5 4 3 33 33 H 1.08997 * 109.47534 * 325.00506 * 5 4 3 34 34 H 0.96998 * 120.00025 * 180.02562 * 9 8 6 35 35 H 1.08006 * 119.92298 * 359.97438 * 18 17 14 36 36 H 1.07998 * 120.07582 * 180.27480 * 19 18 17 37 37 H 0.96702 * 116.99758 * 179.97438 * 23 21 20 38 38 H 1.08006 * 120.07369 * 180.02562 * 24 20 19 39 39 H 1.09004 * 109.46951 * 277.86266 * 26 25 24 40 40 H 1.08989 * 109.47918 * 37.86781 * 26 25 24 41 41 H 1.09003 * 109.47115 * 157.86954 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0469 1.3013 1.0859 5 6 4.1419 0.3282 1.0790 6 6 5.2796 0.8581 0.2447 7 1 5.1955 1.8233 -0.2322 8 6 6.4282 0.1110 0.0913 9 7 7.4213 0.5736 -0.6363 10 14 6.5740 -1.5584 0.9168 11 1 6.0645 -2.6100 0.0003 12 1 7.9982 -1.8292 1.2379 13 1 5.7747 -1.5631 2.1684 14 16 2.9206 2.3970 2.3212 15 8 4.2349 2.8785 2.5663 16 8 1.8300 3.2470 1.9937 17 6 2.4406 1.5047 3.7627 18 6 3.3171 1.3942 4.8280 19 6 2.9457 0.7020 5.9617 20 6 1.6865 0.1020 6.0284 21 6 1.2841 -0.6461 7.2370 22 8 0.1879 -1.1666 7.2922 23 8 2.1328 -0.7511 8.2778 24 6 0.8095 0.2126 4.9478 25 6 1.1913 0.9135 3.8225 26 6 0.2457 1.0345 2.6553 27 1 -0.5400 0.9318 -0.0813 28 1 -0.5400 -0.9318 0.0812 29 1 1.8500 -0.9353 0.0004 30 1 1.3642 2.1284 0.1461 31 1 2.5761 1.4287 -0.9539 32 1 4.4865 0.1618 2.0996 33 1 3.7892 -0.6127 0.6567 34 1 8.2292 0.0479 -0.7446 35 1 4.2926 1.8544 4.7730 36 1 3.6290 0.6202 6.7941 37 1 1.8248 -1.2500 9.0468 38 1 -0.1661 -0.2487 4.9931 39 1 0.3073 0.1348 2.0431 40 1 -0.7730 1.1542 3.0238 41 1 0.5191 1.9021 2.0547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291867967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:55 Heat of formation + Delta-G solvation = -123.222032 kcal Electronic energy + Delta-G solvation = -28191.565530 eV Core-core repulsion = 24163.939462 eV Total energy + Delta-G solvation = -4027.626069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63470 -40.07609 -38.63843 -38.06733 -37.22888 -36.97396 -35.04744 -34.15836 -33.64988 -32.69302 -29.90776 -28.10867 -26.71079 -26.24449 -24.02264 -23.23880 -22.39515 -20.71560 -19.98418 -19.18273 -19.03042 -18.87912 -18.44456 -18.14035 -17.46250 -16.80961 -16.59394 -16.11883 -15.79336 -15.71908 -15.53605 -15.07969 -14.94120 -14.54001 -14.50231 -14.37898 -14.09849 -13.93192 -13.63315 -13.41311 -13.35434 -13.16577 -12.92329 -12.76592 -12.69565 -12.61314 -12.43063 -12.34530 -12.09476 -11.98747 -11.80690 -11.69361 -11.61460 -10.74890 -10.69311 -10.26248 -9.83942 -9.72270 -8.25045 -6.29810 -1.00650 -0.63425 0.08838 1.13125 1.36215 1.38339 1.40798 1.48873 1.83729 2.02780 2.35926 2.36514 2.67726 3.07756 3.26097 3.51777 3.64806 3.89295 3.93782 3.99431 4.10879 4.23205 4.33768 4.35370 4.53964 4.70147 4.72312 4.75265 4.81250 4.84287 4.93864 4.97180 5.06403 5.11924 5.24071 5.34372 5.42153 5.49484 5.55650 5.63550 5.81955 5.98109 6.33977 6.74739 6.82978 7.32074 8.92571 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010649 B = 0.004840 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.704600 B = 5784.029740 C = 6773.031921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.183 4.183 3 C 0.135 3.865 4 N -0.976 5.976 5 C 0.234 3.766 6 C -0.534 4.534 7 H 0.033 0.967 8 C 0.011 3.989 9 N -0.947 5.947 10 Si 0.934 3.066 11 H -0.256 1.256 12 H -0.285 1.285 13 H -0.239 1.239 14 S 2.688 3.312 15 O -0.983 6.983 16 O -0.973 6.973 17 C -0.657 4.657 18 C -0.046 4.046 19 C -0.085 4.085 20 C -0.082 4.082 21 C 0.538 3.462 22 O -0.532 6.532 23 O -0.498 6.498 24 C -0.082 4.082 25 C 0.014 3.986 26 C -0.191 4.191 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.267 0.733 35 H 0.150 0.850 36 H 0.173 0.827 37 H 0.438 0.562 38 H 0.163 0.837 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 -5.315 13.721 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C 0.011 3.989 4 N -0.814 5.814 5 C 0.109 3.891 6 C -0.573 4.573 7 H 0.051 0.949 8 C -0.187 4.187 9 N -0.588 5.588 10 Si 0.757 3.243 11 H -0.181 1.181 12 H -0.211 1.211 13 H -0.162 1.162 14 S 2.782 3.218 15 O -0.973 6.973 16 O -0.963 6.963 17 C -0.746 4.746 18 C -0.065 4.065 19 C -0.104 4.104 20 C -0.083 4.083 21 C 0.382 3.618 22 O -0.423 6.423 23 O -0.312 6.312 24 C -0.100 4.100 25 C 0.013 3.987 26 C -0.247 4.247 27 H 0.131 0.869 28 H 0.142 0.858 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.190 0.810 37 H 0.301 0.699 38 H 0.181 0.819 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.407 -4.362 13.292 21.561 hybrid contribution 0.676 -1.174 0.791 1.569 sum -15.731 -5.536 14.083 21.827 Atomic orbital electron populations 1.24129 0.94742 1.03843 0.97328 1.23169 0.96703 0.98198 1.02199 1.20626 0.90148 0.97829 0.90305 1.57021 1.36422 1.52355 1.35577 1.19250 0.83743 0.89332 0.96755 1.21635 1.00341 1.04568 1.30777 0.94875 1.25829 0.94919 1.02443 0.95500 1.70064 1.06844 1.40306 1.41558 0.85914 0.78278 0.79473 0.80666 1.18084 1.21059 1.16235 1.01804 0.72672 0.73746 0.73599 1.93564 1.39416 1.78606 1.85761 1.93440 1.54464 1.64359 1.84055 1.31014 1.04269 1.19200 1.20074 1.21209 0.98796 0.94853 0.91653 1.21740 0.95478 0.94689 0.98488 1.19523 0.96167 0.99700 0.92920 1.20603 0.81464 0.76638 0.83062 1.90898 1.23350 1.46063 1.81987 1.84520 1.47334 1.71338 1.28025 1.21427 1.00506 0.97209 0.90904 1.19756 0.91815 0.90867 0.96262 1.22319 0.99923 1.06512 0.95898 0.86944 0.85840 0.87082 0.87573 0.90991 0.94897 0.92425 0.92450 0.83215 0.80986 0.69875 0.81936 0.86485 0.87180 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 11.08 67.78 0.75 -2.06 16 2 C -0.18 -4.43 7.94 25.64 0.20 -4.23 16 3 C 0.14 4.23 5.50 85.63 0.47 4.70 16 4 N -0.98 -37.03 2.80 -523.92 -1.47 -38.50 16 5 C 0.23 10.21 4.17 85.63 0.36 10.57 16 6 C -0.53 -29.93 9.94 25.60 0.25 -29.68 16 7 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 8 C 0.01 0.62 5.47 84.65 0.46 1.08 16 9 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 10 Si 0.93 41.37 27.47 68.60 1.88 43.26 16 11 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 14 S 2.69 101.96 4.83 -56.49 -0.27 101.69 16 15 O -0.98 -45.95 16.59 -128.00 -2.12 -48.07 16 16 O -0.97 -36.10 13.70 -128.00 -1.75 -37.86 16 17 C -0.66 -20.32 5.92 22.33 0.13 -20.18 16 18 C -0.05 -1.31 9.53 22.23 0.21 -1.09 16 19 C -0.09 -1.92 9.62 22.54 0.22 -1.70 16 20 C -0.08 -1.82 5.87 -20.10 -0.12 -1.94 16 21 C 0.54 10.52 8.27 70.33 0.58 11.10 16 22 O -0.53 -12.80 17.13 19.92 0.34 -12.46 16 23 O -0.50 -6.28 12.68 -56.17 -0.71 -6.99 16 24 C -0.08 -1.85 9.27 22.54 0.21 -1.64 16 25 C 0.01 0.37 5.87 -19.91 -0.12 0.25 16 26 C -0.19 -4.12 7.77 71.24 0.55 -3.57 16 27 H 0.11 1.70 7.88 -2.91 -0.02 1.67 16 28 H 0.12 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.11 2.78 7.12 -2.91 -0.02 2.76 16 30 H 0.11 2.99 5.64 -2.38 -0.01 2.97 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.03 1.42 7.05 -2.39 -0.02 1.40 16 33 H 0.06 2.27 6.26 -2.39 -0.01 2.25 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 35 H 0.15 4.32 7.32 -2.91 -0.02 4.30 16 36 H 0.17 2.87 7.61 -2.91 -0.02 2.85 16 37 H 0.44 1.26 9.11 -74.06 -0.67 0.59 16 38 H 0.16 3.04 7.65 -2.91 -0.02 3.02 16 39 H 0.12 2.22 4.34 -2.39 -0.01 2.21 16 40 H 0.11 1.74 8.13 -2.39 -0.02 1.72 16 41 H 0.09 2.29 3.28 -2.39 -0.01 2.28 16 Total: -1.00 -78.47 350.08 0.73 -77.75 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.36 Total: 18.08 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 4.17 Total: -38.37 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -1.17 Total: -97.02 kcal Atomic # 8 Polarization: -101.13 SS G_CDS: -4.25 Total: -105.38 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.26 kcal Atomic # 16 Polarization: 101.96 SS G_CDS: -0.27 Total: 101.69 kcal Total: -78.47 0.73 -77.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291867967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.476 kcal (2) G-P(sol) polarization free energy of solvation -78.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds