Wall clock time and date at job start Tue Mar 31 2020 22:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99662 * 2 1 4 4 N 1.46505 * 109.46799 * 125.00472 * 3 2 1 5 5 C 1.46496 * 119.99644 * 274.99879 * 4 3 2 6 6 C 1.50704 * 109.47101 * 274.99827 * 5 4 3 7 7 H 1.07999 * 119.99994 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99855 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00128 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99603 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47468 * 59.99680 * 10 8 6 12 12 H 1.48500 * 109.46869 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47219 * 299.99401 * 10 8 6 14 14 S 1.65597 * 120.00206 * 94.99833 * 4 3 2 15 15 O 1.42102 * 106.39978 * 336.45594 * 14 4 3 16 16 O 1.42099 * 106.40281 * 203.53985 * 14 4 3 17 17 C 1.76198 * 107.21923 * 89.99932 * 14 4 3 18 18 C 1.38387 * 119.84632 * 270.29402 * 17 14 4 19 19 C 1.37926 * 120.14876 * 180.25426 * 18 17 14 20 20 C 1.39653 * 119.84758 * 359.47522 * 19 18 17 21 21 C 1.47723 * 120.15047 * 180.23236 * 20 19 18 22 22 O 1.21475 * 119.99902 * 173.77022 * 21 20 19 23 23 O 1.34708 * 119.99960 * 353.76661 * 21 20 19 24 24 C 1.39609 * 119.69641 * 0.24897 * 20 19 18 25 25 C 1.50705 * 120.07258 * 180.02562 * 24 20 19 26 26 C 1.37969 * 119.85322 * 0.02562 * 24 20 19 27 27 H 1.08003 * 120.00236 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00011 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00061 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47561 * 5.00486 * 3 2 1 31 31 H 1.08999 * 109.47278 * 244.99896 * 3 2 1 32 32 H 1.09003 * 109.47662 * 34.99745 * 5 4 3 33 33 H 1.09001 * 109.47350 * 155.00241 * 5 4 3 34 34 H 0.97004 * 120.00179 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.93211 * 0.02562 * 18 17 14 36 36 H 1.07996 * 120.07831 * 179.75332 * 19 18 17 37 37 H 0.96704 * 116.99379 * 180.02562 * 23 21 20 38 38 H 1.08998 * 109.47395 * 83.42704 * 25 24 20 39 39 H 1.09001 * 109.46927 * 203.42362 * 25 24 20 40 40 H 1.08997 * 109.47202 * 323.42134 * 25 24 20 41 41 H 1.07994 * 119.92759 * 179.97438 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7620 2.4523 6 6 2.5991 3.2645 2.5450 7 1 2.9554 3.8413 1.7043 8 6 2.2099 3.9027 3.7036 9 7 1.7765 3.2004 4.7274 10 14 2.2968 5.7652 3.8183 11 1 1.4338 6.3665 2.7700 12 1 1.8252 6.2012 5.1572 13 1 3.7000 6.2085 3.6186 14 16 4.5713 0.8759 0.9173 15 8 4.5922 0.0262 -0.2215 16 8 5.0503 0.4763 2.1940 17 6 5.4768 2.3216 0.4762 18 6 5.6056 2.6739 -0.8559 19 6 6.3175 3.8014 -1.2085 20 6 6.8997 4.5941 -0.2170 21 6 7.6593 5.8059 -0.5869 22 8 8.0678 6.5543 0.2784 23 8 7.8990 6.0810 -1.8836 24 6 6.7609 4.2359 1.1251 25 6 7.3852 5.0855 2.2020 26 6 6.0509 3.1023 1.4635 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4983 1.4370 2.5982 33 1 3.1613 1.3203 3.2220 34 1 1.5023 3.6494 5.5424 35 1 5.1509 2.0627 -1.6214 36 1 6.4207 4.0731 -2.2486 37 1 8.4005 6.8850 -2.0763 38 1 6.7217 5.9173 2.4389 39 1 7.5435 4.4813 3.0953 40 1 8.3417 5.4723 1.8507 41 1 5.9431 2.8239 2.5014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291926284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:18 Heat of formation + Delta-G solvation = -112.691026 kcal Electronic energy + Delta-G solvation = -27974.484956 eV Core-core repulsion = 23947.315546 eV Total energy + Delta-G solvation = -4027.169410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70038 -38.75585 -36.85507 -36.41257 -36.36818 -35.36814 -33.26326 -32.74767 -31.95462 -31.60044 -27.57649 -27.24060 -24.99819 -24.81398 -22.40054 -22.29588 -21.25695 -19.74188 -18.43022 -18.30903 -17.45844 -17.03763 -16.87537 -16.33597 -16.00104 -15.84904 -15.31586 -14.65337 -14.50486 -14.37485 -13.95670 -13.66338 -13.59000 -13.18517 -13.08455 -12.85035 -12.53304 -12.32824 -12.27431 -12.09026 -11.81894 -11.69082 -11.61582 -11.35223 -11.21758 -11.20959 -10.97346 -10.85905 -10.76606 -10.56068 -10.24107 -10.09555 -9.87493 -9.39118 -9.10048 -8.77125 -8.54103 -8.18469 -6.16163 -4.23245 0.26653 0.92561 1.31812 2.27156 2.59723 2.79083 3.22993 3.29059 3.30539 3.41373 3.69076 4.21712 4.32612 4.53595 4.73091 4.78035 5.04816 5.18461 5.25418 5.26857 5.36037 5.42411 5.48409 5.61479 5.73221 5.83473 5.92259 5.98424 6.08228 6.13225 6.16618 6.24996 6.29743 6.40470 6.48699 6.77382 6.93860 7.01887 7.28448 7.35133 7.53517 7.68347 7.79983 8.07883 8.81348 9.43518 10.91660 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009387 B = 0.005480 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.063526 B = 5107.896153 C = 6871.830118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.155 3.845 4 N -0.974 5.974 5 C 0.243 3.757 6 C -0.544 4.544 7 H 0.061 0.939 8 C 0.069 3.931 9 N -0.887 5.887 10 Si 0.888 3.112 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.274 1.274 14 S 2.685 3.315 15 O -0.971 6.971 16 O -0.951 6.951 17 C -0.627 4.627 18 C -0.049 4.049 19 C -0.085 4.085 20 C -0.093 4.093 21 C 0.525 3.475 22 O -0.501 6.501 23 O -0.512 6.512 24 C -0.037 4.037 25 C -0.125 4.125 26 C -0.011 4.011 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.266 0.734 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.413 0.587 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.964 1.204 -12.145 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.182 4.182 3 C 0.030 3.970 4 N -0.813 5.813 5 C 0.122 3.878 6 C -0.584 4.584 7 H 0.079 0.921 8 C -0.134 4.134 9 N -0.524 5.524 10 Si 0.715 3.285 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.199 1.199 14 S 2.773 3.227 15 O -0.961 6.961 16 O -0.941 6.941 17 C -0.712 4.712 18 C -0.068 4.068 19 C -0.104 4.104 20 C -0.094 4.094 21 C 0.369 3.631 22 O -0.391 6.391 23 O -0.324 6.324 24 C -0.038 4.038 25 C -0.181 4.181 26 C -0.030 4.030 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.272 0.728 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.140 0.272 -11.514 13.551 hybrid contribution 0.281 2.486 -0.147 2.506 sum 7.421 2.758 -11.661 14.095 Atomic orbital electron populations 1.23790 0.95795 1.01636 1.01084 1.23419 0.96334 0.99207 0.99223 1.20242 0.93140 0.95766 0.87898 1.57397 1.23359 1.82559 1.17975 1.19305 0.97374 0.94897 0.76232 1.21491 1.45184 0.91879 0.99809 0.92073 1.24892 0.94847 0.98219 0.95490 1.69910 1.42714 1.35697 1.04114 0.86721 0.78774 0.85646 0.77351 1.20209 1.21081 1.19930 1.02223 0.73197 0.73962 0.73311 1.93529 1.86943 1.63068 1.52600 1.93569 1.79993 1.80269 1.40313 1.31634 1.14908 1.23823 1.00791 1.20844 0.95865 0.95686 0.94405 1.21427 0.95836 0.93818 0.99301 1.19091 1.01688 0.94380 0.94261 1.20941 0.76969 0.85178 0.79978 1.90866 1.49451 1.48975 1.49794 1.84569 1.71107 1.48622 1.28072 1.20149 0.95582 0.95125 0.92978 1.21153 1.02007 0.99028 0.95902 1.20914 0.90915 0.91167 0.99977 0.88371 0.88826 0.87405 0.89286 0.90673 0.93699 0.92781 0.92438 0.83773 0.83953 0.72817 0.90055 0.91209 0.89177 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 14.32 29.01 0.42 -2.13 16 2 C -0.16 -2.50 9.84 -36.03 -0.35 -2.85 16 3 C 0.16 2.55 5.78 -5.19 -0.03 2.52 16 4 N -0.97 -18.96 2.75 -116.95 -0.32 -19.28 16 5 C 0.24 5.74 5.43 -5.19 -0.03 5.71 16 6 C -0.54 -13.68 9.38 -34.44 -0.32 -14.00 16 7 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -24.57 13.29 55.43 0.74 -23.84 16 10 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 14 S 2.68 50.63 5.64 -107.50 -0.61 50.02 16 15 O -0.97 -18.11 16.25 -57.17 -0.93 -19.04 16 16 O -0.95 -20.69 15.82 -57.17 -0.90 -21.59 16 17 C -0.63 -10.75 5.98 -39.49 -0.24 -10.98 16 18 C -0.05 -0.71 9.50 -39.64 -0.38 -1.08 16 19 C -0.08 -1.12 9.62 -39.17 -0.38 -1.49 16 20 C -0.09 -1.35 5.87 -104.98 -0.62 -1.97 16 21 C 0.52 6.83 8.20 34.61 0.28 7.11 16 22 O -0.50 -7.48 14.13 -19.25 -0.27 -7.75 16 23 O -0.51 -4.74 12.70 -40.51 -0.51 -5.25 16 24 C -0.04 -0.60 5.92 -104.21 -0.62 -1.22 16 25 C -0.12 -1.87 8.73 36.01 0.31 -1.55 16 26 C -0.01 -0.19 9.13 -39.64 -0.36 -0.55 16 27 H 0.10 1.30 7.84 -52.48 -0.41 0.89 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.09 1.46 7.76 -51.93 -0.40 1.05 16 31 H 0.08 1.05 7.61 -51.93 -0.40 0.66 16 32 H 0.05 1.11 8.11 -51.93 -0.42 0.69 16 33 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.14 1.75 7.61 -52.49 -0.40 1.35 16 36 H 0.14 1.45 7.63 -52.49 -0.40 1.05 16 37 H 0.41 1.84 9.11 45.56 0.42 2.26 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.09 1.29 5.85 -51.93 -0.30 0.99 16 41 H 0.16 2.80 7.60 -52.49 -0.40 2.40 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -31.95 369.07 -8.98 -40.94 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.31 Total: 5.56 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.40 Total: -20.77 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.41 Total: -43.12 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -2.62 Total: -53.63 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 50.63 SS G_CDS: -0.61 Total: 50.02 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.95 -8.98 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291926284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.754 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds