Wall clock time and date at job start Tue Mar 31 2020 22:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99662 * 2 1 4 4 N 1.46505 * 109.46799 * 125.00472 * 3 2 1 5 5 C 1.46496 * 119.99644 * 274.99879 * 4 3 2 6 6 C 1.50704 * 109.47101 * 274.99827 * 5 4 3 7 7 H 1.07999 * 119.99994 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99855 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00128 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99603 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47468 * 59.99680 * 10 8 6 12 12 H 1.48500 * 109.46869 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47219 * 299.99401 * 10 8 6 14 14 S 1.65597 * 120.00206 * 94.99833 * 4 3 2 15 15 O 1.42102 * 106.39978 * 336.45594 * 14 4 3 16 16 O 1.42099 * 106.40281 * 203.53985 * 14 4 3 17 17 C 1.76198 * 107.21923 * 89.99932 * 14 4 3 18 18 C 1.38387 * 119.84632 * 270.29402 * 17 14 4 19 19 C 1.37926 * 120.14876 * 180.25426 * 18 17 14 20 20 C 1.39653 * 119.84758 * 359.47522 * 19 18 17 21 21 C 1.47723 * 120.15047 * 180.23236 * 20 19 18 22 22 O 1.21475 * 119.99902 * 173.77022 * 21 20 19 23 23 O 1.34708 * 119.99960 * 353.76661 * 21 20 19 24 24 C 1.39609 * 119.69641 * 0.24897 * 20 19 18 25 25 C 1.50705 * 120.07258 * 180.02562 * 24 20 19 26 26 C 1.37969 * 119.85322 * 0.02562 * 24 20 19 27 27 H 1.08003 * 120.00236 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00011 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00061 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47561 * 5.00486 * 3 2 1 31 31 H 1.08999 * 109.47278 * 244.99896 * 3 2 1 32 32 H 1.09003 * 109.47662 * 34.99745 * 5 4 3 33 33 H 1.09001 * 109.47350 * 155.00241 * 5 4 3 34 34 H 0.97004 * 120.00179 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.93211 * 0.02562 * 18 17 14 36 36 H 1.07996 * 120.07831 * 179.75332 * 19 18 17 37 37 H 0.96704 * 116.99379 * 180.02562 * 23 21 20 38 38 H 1.08998 * 109.47395 * 83.42704 * 25 24 20 39 39 H 1.09001 * 109.46927 * 203.42362 * 25 24 20 40 40 H 1.08997 * 109.47202 * 323.42134 * 25 24 20 41 41 H 1.07994 * 119.92759 * 179.97438 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7620 2.4523 6 6 2.5991 3.2645 2.5450 7 1 2.9554 3.8413 1.7043 8 6 2.2099 3.9027 3.7036 9 7 1.7765 3.2004 4.7274 10 14 2.2968 5.7652 3.8183 11 1 1.4338 6.3665 2.7700 12 1 1.8252 6.2012 5.1572 13 1 3.7000 6.2085 3.6186 14 16 4.5713 0.8759 0.9173 15 8 4.5922 0.0262 -0.2215 16 8 5.0503 0.4763 2.1940 17 6 5.4768 2.3216 0.4762 18 6 5.6056 2.6739 -0.8559 19 6 6.3175 3.8014 -1.2085 20 6 6.8997 4.5941 -0.2170 21 6 7.6593 5.8059 -0.5869 22 8 8.0678 6.5543 0.2784 23 8 7.8990 6.0810 -1.8836 24 6 6.7609 4.2359 1.1251 25 6 7.3852 5.0855 2.2020 26 6 6.0509 3.1023 1.4635 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4983 1.4370 2.5982 33 1 3.1613 1.3203 3.2220 34 1 1.5023 3.6494 5.5424 35 1 5.1509 2.0627 -1.6214 36 1 6.4207 4.0731 -2.2486 37 1 8.4005 6.8850 -2.0763 38 1 6.7217 5.9173 2.4389 39 1 7.5435 4.4813 3.0953 40 1 8.3417 5.4723 1.8507 41 1 5.9431 2.8239 2.5014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291926284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:18 Heat of formation + Delta-G solvation = -133.830721 kcal Electronic energy + Delta-G solvation = -27975.401642 eV Core-core repulsion = 23947.315546 eV Total energy + Delta-G solvation = -4028.086096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72610 -39.85667 -38.39368 -37.92101 -37.26535 -36.93895 -34.99440 -33.92404 -33.52825 -32.77808 -29.33798 -28.41651 -26.53222 -25.98400 -24.16339 -23.43772 -22.37735 -20.97355 -19.87608 -19.27256 -18.67837 -18.55554 -18.36338 -17.99112 -17.43589 -16.91551 -16.65393 -16.21424 -15.85623 -15.58572 -15.28309 -14.90392 -14.77343 -14.60442 -14.35511 -14.22659 -13.98123 -13.81641 -13.47473 -13.39352 -13.33103 -13.18729 -13.06348 -12.97318 -12.59238 -12.48597 -12.40000 -12.36056 -12.32032 -12.12581 -11.88808 -11.67460 -11.28674 -10.63417 -10.55524 -10.28048 -9.95893 -9.81149 -8.17451 -6.29869 -0.94082 -0.53751 0.14091 1.18753 1.39699 1.41474 1.42485 1.48192 1.87881 2.06998 2.37484 2.43760 2.75613 3.14864 3.22485 3.57921 3.64301 3.94474 3.95234 4.09983 4.18672 4.21296 4.33848 4.42852 4.60083 4.65716 4.73970 4.79042 4.87235 4.93953 4.98507 5.03487 5.12097 5.24680 5.31688 5.45413 5.51178 5.61134 5.71157 5.78681 5.81905 6.01796 6.09673 6.81631 6.87961 7.39997 8.90434 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009387 B = 0.005480 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.063526 B = 5107.896153 C = 6871.830118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.188 4.188 3 C 0.147 3.853 4 N -0.979 5.979 5 C 0.260 3.740 6 C -0.540 4.540 7 H 0.067 0.933 8 C 0.021 3.979 9 N -0.923 5.923 10 Si 0.943 3.057 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.270 1.270 14 S 2.694 3.306 15 O -0.969 6.969 16 O -0.990 6.990 17 C -0.638 4.638 18 C -0.047 4.047 19 C -0.068 4.068 20 C -0.096 4.096 21 C 0.533 3.467 22 O -0.524 6.524 23 O -0.496 6.496 24 C -0.052 4.052 25 C -0.122 4.122 26 C -0.034 4.034 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.172 0.828 36 H 0.183 0.817 37 H 0.437 0.563 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 2.676 -15.251 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.208 4.208 3 C 0.023 3.977 4 N -0.817 5.817 5 C 0.137 3.863 6 C -0.580 4.580 7 H 0.085 0.915 8 C -0.180 4.180 9 N -0.563 5.563 10 Si 0.768 3.232 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.195 1.195 14 S 2.786 3.214 15 O -0.960 6.960 16 O -0.981 6.981 17 C -0.725 4.725 18 C -0.066 4.066 19 C -0.087 4.087 20 C -0.098 4.098 21 C 0.378 3.622 22 O -0.416 6.416 23 O -0.310 6.310 24 C -0.053 4.053 25 C -0.178 4.178 26 C -0.054 4.054 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.189 0.811 36 H 0.200 0.800 37 H 0.300 0.700 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.469 1.724 -14.664 16.547 hybrid contribution 0.218 2.026 0.668 2.145 sum 7.687 3.751 -13.997 16.403 Atomic orbital electron populations 1.24027 0.95318 1.02885 0.98405 1.23397 0.97018 0.98669 1.01686 1.20505 0.93152 0.96368 0.87688 1.57267 1.24362 1.82640 1.17389 1.18799 0.95734 0.94060 0.77719 1.21754 1.43852 0.92630 0.99716 0.91481 1.25625 0.94835 1.02139 0.95359 1.70027 1.44239 1.37303 1.04693 0.85838 0.78911 0.81033 0.77406 1.19205 1.21108 1.19532 1.01656 0.72835 0.74350 0.72565 1.93518 1.86914 1.63572 1.51949 1.93517 1.80571 1.81544 1.42467 1.31256 1.15850 1.23195 1.02248 1.21238 0.95517 0.96310 0.93521 1.21844 0.93694 0.92318 1.00825 1.19364 1.01395 0.95188 0.93842 1.20591 0.76407 0.84297 0.80874 1.90868 1.50311 1.49571 1.50841 1.84497 1.71012 1.50061 1.25422 1.20246 0.95891 0.94854 0.94356 1.21126 1.02016 0.98571 0.96055 1.20812 0.92701 0.92546 0.99319 0.87864 0.86807 0.87659 0.89423 0.88046 0.95365 0.95845 0.92529 0.81101 0.79992 0.70015 0.91099 0.90910 0.88447 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 14.32 67.78 0.97 -3.40 16 2 C -0.19 -5.64 9.84 25.64 0.25 -5.39 16 3 C 0.15 4.71 5.78 85.63 0.50 5.20 16 4 N -0.98 -38.55 2.75 -523.91 -1.44 -39.99 16 5 C 0.26 12.71 5.43 85.64 0.47 13.17 16 6 C -0.54 -27.58 9.38 25.60 0.24 -27.34 16 7 H 0.07 3.28 7.81 -2.91 -0.02 3.26 16 8 C 0.02 1.10 5.46 84.66 0.46 1.56 16 9 N -0.92 -52.57 13.29 21.45 0.28 -52.28 16 10 Si 0.94 42.07 29.54 68.60 2.03 44.09 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 12 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 14 S 2.69 102.84 5.64 -56.49 -0.32 102.53 16 15 O -0.97 -35.34 16.25 -128.00 -2.08 -37.42 16 16 O -0.99 -45.30 15.82 -128.00 -2.02 -47.33 16 17 C -0.64 -21.51 5.98 22.33 0.13 -21.38 16 18 C -0.05 -1.22 9.50 22.23 0.21 -1.01 16 19 C -0.07 -1.53 9.62 22.54 0.22 -1.32 16 20 C -0.10 -2.57 5.87 -20.10 -0.12 -2.69 16 21 C 0.53 12.23 8.20 70.33 0.58 12.81 16 22 O -0.52 -14.51 14.13 19.92 0.28 -14.23 16 23 O -0.50 -6.94 12.70 -56.18 -0.71 -7.66 16 24 C -0.05 -1.66 5.92 -19.60 -0.12 -1.78 16 25 C -0.12 -3.64 8.73 71.24 0.62 -3.02 16 26 C -0.03 -1.23 9.13 22.23 0.20 -1.03 16 27 H 0.10 2.57 7.84 -2.91 -0.02 2.54 16 28 H 0.11 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.11 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.09 2.79 7.76 -2.39 -0.02 2.77 16 31 H 0.10 2.64 7.61 -2.39 -0.02 2.62 16 32 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 33 H 0.02 1.29 6.91 -2.39 -0.02 1.27 16 34 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.17 3.48 7.61 -2.91 -0.02 3.46 16 36 H 0.18 2.64 7.63 -2.91 -0.02 2.62 16 37 H 0.44 1.91 9.11 -74.05 -0.67 1.24 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 40 H 0.10 2.74 5.85 -2.39 -0.01 2.72 16 41 H 0.13 5.21 7.60 -2.91 -0.02 5.19 16 Total: -1.00 -70.07 369.07 1.02 -69.05 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.39 Total: 18.83 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 4.62 Total: -35.60 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -1.16 Total: -92.27 kcal Atomic # 8 Polarization: -102.09 SS G_CDS: -4.54 Total: -106.63 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 102.84 SS G_CDS: -0.32 Total: 102.53 kcal Total: -70.07 1.02 -69.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291926284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.785 kcal (2) G-P(sol) polarization free energy of solvation -70.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds