Wall clock time and date at job start Tue Mar 31 2020 22:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00165 * 2 1 4 4 N 1.46492 * 109.47158 * 125.00552 * 3 2 1 5 5 C 1.46510 * 120.00046 * 278.72544 * 4 3 2 6 6 C 1.50697 * 109.46843 * 275.00095 * 5 4 3 7 7 H 1.08007 * 120.00543 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99914 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99964 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99988 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47237 * 89.99549 * 10 8 6 12 12 H 1.48500 * 109.46974 * 210.00124 * 10 8 6 13 13 H 1.48500 * 109.46878 * 329.99733 * 10 8 6 14 14 S 1.65600 * 120.00493 * 98.72404 * 4 3 2 15 15 O 1.42105 * 106.39886 * 344.33049 * 14 4 3 16 16 O 1.42092 * 106.40575 * 211.40784 * 14 4 3 17 17 C 1.76208 * 107.21625 * 97.86350 * 14 4 3 18 18 C 1.38279 * 119.92664 * 114.56334 * 17 14 4 19 19 C 1.38499 * 120.03190 * 179.97438 * 18 17 14 20 20 C 1.39315 * 119.82378 * 359.97438 * 19 18 17 21 21 C 1.38498 * 119.82778 * 0.21501 * 20 19 18 22 22 C 1.38201 * 119.92793 * 294.53894 * 17 14 4 23 23 C 1.50702 * 119.93349 * 0.04423 * 22 17 14 24 24 O 1.36496 * 108.63003 * 179.97438 * 20 19 18 25 25 C 1.43990 * 105.48903 * 17.27769 * 24 20 19 26 26 O 1.36498 * 131.54231 * 179.97438 * 19 18 17 27 27 H 1.08000 * 120.00191 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00113 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99700 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47071 * 5.00233 * 3 2 1 31 31 H 1.09002 * 109.47530 * 245.00756 * 3 2 1 32 32 H 1.08999 * 109.47091 * 34.99758 * 5 4 3 33 33 H 1.08995 * 109.47059 * 155.00033 * 5 4 3 34 34 H 0.97005 * 120.00279 * 180.02562 * 9 8 6 35 35 H 1.08002 * 119.98336 * 359.96297 * 18 17 14 36 36 H 1.07999 * 119.98490 * 179.66758 * 21 20 19 37 37 H 1.08999 * 109.47017 * 83.58663 * 23 22 17 38 38 H 1.09000 * 109.47543 * 203.58972 * 23 22 17 39 39 H 1.09001 * 109.46551 * 323.58700 * 23 22 17 40 40 H 1.08996 * 110.56939 * 91.44913 * 25 24 20 41 41 H 1.09005 * 110.57113 * 214.31389 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.5105 1.6832 2.4690 6 6 2.5060 3.1822 2.6236 7 1 2.8310 3.8104 1.8073 8 6 2.0870 3.7519 3.8072 9 7 2.0835 5.0601 3.9424 10 14 1.5255 2.6656 5.2194 11 1 2.6888 2.3319 6.0800 12 1 0.5056 3.3861 6.0229 13 1 0.9358 1.4150 4.6776 14 16 4.5917 0.9647 0.8983 15 8 4.6760 0.3253 -0.3680 16 8 5.0455 0.3646 2.1037 17 6 5.4601 2.4902 0.7441 18 6 6.3884 2.8554 1.7016 19 6 7.0726 4.0536 1.5823 20 6 6.8233 4.8886 0.4953 21 6 5.8893 4.5182 -0.4579 22 6 5.2123 3.3187 -0.3339 23 6 4.1993 2.9162 -1.3745 24 8 7.6141 5.9957 0.6055 25 6 8.6421 5.6415 1.5494 26 8 8.0199 4.6377 2.3726 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4983 1.3012 2.6016 33 1 3.1665 1.2425 3.2197 34 1 1.7890 5.4609 4.7752 35 1 6.5799 2.2060 2.5431 36 1 5.6901 5.1660 -1.2987 37 1 3.2010 3.1940 -1.0364 38 1 4.4200 3.4254 -2.3127 39 1 4.2442 1.8378 -1.5272 40 1 9.5098 5.2298 1.0340 41 1 8.9263 6.5065 2.1487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292524917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:21 Heat of formation + Delta-G solvation = -92.397847 kcal Electronic energy + Delta-G solvation = -28699.087408 eV Core-core repulsion = 24672.797977 eV Total energy + Delta-G solvation = -4026.289432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.32308 -39.48013 -38.49848 -38.00743 -37.47427 -36.97941 -34.92654 -33.65896 -33.23987 -31.85921 -29.93942 -28.23075 -26.78646 -26.29876 -24.59916 -23.72316 -23.31081 -20.96524 -20.46540 -19.22119 -19.01149 -18.81524 -18.66363 -18.29641 -17.56828 -17.33682 -16.61089 -16.28464 -15.86944 -15.66175 -15.49731 -15.30011 -15.05688 -14.86595 -14.59515 -14.38424 -14.21819 -14.13035 -13.89264 -13.66160 -13.51203 -13.32963 -13.18178 -13.09001 -12.81421 -12.61546 -12.46472 -12.30681 -11.99151 -11.89081 -11.86338 -11.78115 -11.62665 -10.75433 -10.23231 -10.12481 -9.82548 -9.29170 -8.26318 -6.29893 -0.69179 -0.36977 0.01349 1.36133 1.40503 1.42197 1.47849 1.57410 1.97478 2.19119 2.34021 2.35934 2.71111 3.09132 3.23948 3.34220 3.66929 3.68807 3.85650 3.92651 3.97451 4.10346 4.18253 4.28446 4.45494 4.49376 4.61773 4.66284 4.75695 4.76758 4.81927 4.91176 4.95086 5.00807 5.14504 5.16242 5.31183 5.32599 5.48730 5.66944 5.82454 5.91855 6.00706 6.31992 6.76341 7.34096 8.88839 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010197 B = 0.005906 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.302638 B = 4740.080829 C = 6225.525426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.187 4.187 3 C 0.131 3.869 4 N -0.970 5.970 5 C 0.222 3.778 6 C -0.531 4.531 7 H 0.055 0.945 8 C 0.022 3.978 9 N -0.938 5.938 10 Si 0.917 3.083 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.236 1.236 14 S 2.708 3.292 15 O -0.961 6.961 16 O -0.990 6.990 17 C -0.674 4.674 18 C -0.016 4.016 19 C -0.014 4.014 20 C 0.083 3.917 21 C -0.128 4.128 22 C 0.036 3.964 23 C -0.178 4.178 24 O -0.313 6.313 25 C 0.201 3.799 26 O -0.325 6.325 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.265 0.735 35 H 0.144 0.856 36 H 0.174 0.826 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -3.482 -11.225 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C 0.007 3.993 4 N -0.808 5.808 5 C 0.097 3.903 6 C -0.571 4.571 7 H 0.073 0.927 8 C -0.177 4.177 9 N -0.579 5.579 10 Si 0.741 3.259 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.159 1.159 14 S 2.799 3.201 15 O -0.952 6.952 16 O -0.980 6.980 17 C -0.760 4.760 18 C -0.035 4.035 19 C -0.059 4.059 20 C 0.038 3.962 21 C -0.147 4.147 22 C 0.034 3.966 23 C -0.234 4.234 24 O -0.229 6.229 25 C 0.091 3.909 26 O -0.242 6.242 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.192 0.808 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.295 -3.970 -11.015 13.293 hybrid contribution 0.252 1.095 1.467 1.848 sum 6.547 -2.875 -9.548 11.928 Atomic orbital electron populations 1.24052 0.95301 1.02984 0.98211 1.23364 0.96976 0.98477 1.01874 1.20955 0.93267 0.96783 0.88302 1.57038 1.23307 1.84674 1.15773 1.19378 0.97094 0.94429 0.79375 1.21642 1.43561 0.91525 1.00333 0.92711 1.25603 0.95397 0.95818 1.00861 1.70025 1.49122 1.11432 1.27273 0.86160 0.78895 0.80673 0.80179 1.20133 1.20701 1.15907 1.01333 0.72570 0.73576 0.72620 1.93476 1.86562 1.73293 1.41841 1.93481 1.81235 1.75193 1.48129 1.30657 1.14846 1.26211 1.04320 1.19719 0.93088 0.92969 0.97771 1.19797 0.97647 0.96283 0.92171 1.20219 0.95354 0.85165 0.95508 1.20370 0.97075 0.97607 0.99670 1.19580 0.93063 0.91223 0.92716 1.22025 0.97345 1.05832 0.98163 1.87335 1.40469 1.32533 1.62526 1.26304 0.88910 0.91703 0.84024 1.87338 1.49381 1.50639 1.36814 0.87836 0.86684 0.87307 0.89237 0.86909 0.92640 0.94766 0.92641 0.83850 0.80833 0.88210 0.86205 0.87338 0.86528 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 14.32 67.78 0.97 -2.87 16 2 C -0.19 -5.03 9.81 25.65 0.25 -4.78 16 3 C 0.13 3.93 4.46 85.63 0.38 4.31 16 4 N -0.97 -36.45 2.72 -523.92 -1.43 -37.87 16 5 C 0.22 9.87 4.49 85.63 0.38 10.26 16 6 C -0.53 -27.98 9.94 25.60 0.25 -27.73 16 7 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 8 C 0.02 1.23 5.47 84.66 0.46 1.69 16 9 N -0.94 -56.32 13.96 21.45 0.30 -56.02 16 10 Si 0.92 42.28 27.47 68.60 1.88 44.16 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 14 S 2.71 102.73 5.08 -56.49 -0.29 102.44 16 15 O -0.96 -34.00 14.29 -128.00 -1.83 -35.83 16 16 O -0.99 -43.21 15.70 -128.00 -2.01 -45.21 16 17 C -0.67 -25.42 5.91 22.27 0.13 -25.29 16 18 C -0.02 -0.62 9.56 22.34 0.21 -0.40 16 19 C -0.01 -0.53 7.15 22.59 0.16 -0.37 16 20 C 0.08 2.82 7.15 22.59 0.16 2.98 16 21 C -0.13 -3.92 9.68 22.34 0.22 -3.71 16 22 C 0.04 1.16 5.87 -19.86 -0.12 1.05 16 23 C -0.18 -4.44 7.89 71.24 0.56 -3.87 16 24 O -0.31 -9.21 11.40 -76.01 -0.87 -10.08 16 25 C 0.20 4.56 8.89 113.37 1.01 5.57 16 26 O -0.32 -10.89 11.40 -76.03 -0.87 -11.75 16 27 H 0.10 2.29 7.84 -2.91 -0.02 2.27 16 28 H 0.11 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.11 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.09 2.69 7.78 -2.38 -0.02 2.67 16 31 H 0.11 2.87 4.17 -2.39 -0.01 2.86 16 32 H 0.06 2.35 7.17 -2.39 -0.02 2.33 16 33 H 0.03 1.60 6.46 -2.39 -0.02 1.58 16 34 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 35 H 0.14 5.67 7.33 -2.91 -0.02 5.65 16 36 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.10 2.48 6.49 -2.39 -0.02 2.46 16 38 H 0.12 2.07 8.04 -2.39 -0.02 2.05 16 39 H 0.11 2.77 4.04 -2.39 -0.01 2.76 16 40 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.17 2.52 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -72.36 349.52 0.95 -71.40 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 1.01 Total: 21.92 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 5.04 Total: -43.17 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -1.13 Total: -93.89 kcal Atomic # 8 Polarization: -97.30 SS G_CDS: -5.57 Total: -102.87 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.16 kcal Atomic # 16 Polarization: 102.73 SS G_CDS: -0.29 Total: 102.44 kcal Total: -72.36 0.95 -71.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292524917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.996 kcal (2) G-P(sol) polarization free energy of solvation -72.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds