Wall clock time and date at job start Tue Mar 31 2020 23:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46993 * 14.70213 * 3 2 1 5 5 C 1.36929 * 120.00218 * 274.67200 * 4 3 2 6 6 H 1.08003 * 120.00742 * 309.79883 * 5 4 3 7 7 C 1.38814 * 120.00185 * 129.79451 * 5 4 3 8 8 N 1.31620 * 120.00034 * 152.92206 * 7 5 4 9 9 Si 1.86799 * 119.99956 * 332.93204 * 7 5 4 10 10 H 1.48494 * 109.47175 * 95.84265 * 9 7 5 11 11 H 1.48503 * 109.47049 * 215.84508 * 9 7 5 12 12 H 1.48501 * 109.46750 * 335.84406 * 9 7 5 13 13 S 1.65604 * 119.99918 * 94.68126 * 4 3 2 14 14 O 1.42103 * 104.27688 * 199.85145 * 13 4 3 15 15 O 1.42101 * 104.27280 * 327.70349 * 13 4 3 16 16 C 1.81394 * 104.45227 * 83.77928 * 13 4 3 17 17 C 1.53005 * 109.47168 * 302.89138 * 16 13 4 18 18 C 1.53004 * 109.47021 * 299.99950 * 17 16 13 19 19 C 1.52995 * 109.47323 * 299.99939 * 18 17 16 20 20 C 1.53001 * 109.47016 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.47227 * 299.99725 * 20 19 18 22 22 F 1.39897 * 109.47028 * 60.00212 * 20 19 18 23 23 F 1.39899 * 109.47100 * 180.02562 * 20 19 18 24 24 C 1.53005 * 109.47022 * 60.00062 * 19 18 17 25 25 C 1.53001 * 109.47026 * 299.99751 * 24 19 18 26 26 H 4.40637 * 5.51405 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.46621 * 254.70005 * 3 2 1 28 28 H 1.08996 * 109.47104 * 134.70864 * 3 2 1 29 29 H 0.97008 * 119.99841 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47675 * 62.89081 * 16 13 4 31 31 H 1.09001 * 109.47153 * 59.99953 * 17 16 13 32 32 H 1.08995 * 109.47462 * 180.02562 * 17 16 13 33 33 H 1.08998 * 109.46890 * 179.97438 * 18 17 16 34 34 H 1.09009 * 109.46701 * 60.00089 * 18 17 16 35 35 H 1.09000 * 109.47246 * 300.00370 * 19 18 17 36 36 H 1.09001 * 109.47153 * 180.02562 * 24 19 18 37 37 H 1.09002 * 109.47372 * 60.00083 * 24 19 18 38 38 H 1.08995 * 109.46974 * 300.00267 * 25 24 19 39 39 H 1.09000 * 109.47071 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3351 -0.3505 5 6 3.2725 -2.2905 0.6206 6 1 3.8059 -2.0619 1.5315 7 6 2.7263 -3.5530 0.4346 8 7 3.2582 -4.5955 1.0369 9 14 1.2365 -3.7725 -0.6707 10 1 1.6828 -4.1733 -2.0292 11 1 0.3540 -4.8264 -0.1086 12 1 0.4884 -2.4924 -0.7531 13 16 3.5214 -1.6895 -1.9214 14 8 3.4884 -3.1090 -1.9787 15 8 2.6201 -0.9042 -2.6896 16 6 5.2200 -1.0838 -2.1173 17 6 5.2727 0.4065 -1.7751 18 6 4.3443 1.1787 -2.7146 19 6 4.7959 0.9715 -4.1617 20 6 3.8671 1.7432 -5.1012 21 9 2.5573 1.2756 -4.9499 22 9 3.9148 3.1060 -4.7884 23 9 4.2796 1.5533 -6.4244 24 6 4.7431 -0.5188 -4.5039 25 6 5.6716 -1.2910 -3.5645 26 1 -1.0498 -0.0003 -0.0003 27 1 3.0092 0.2720 0.9913 28 1 3.0090 0.7238 -0.7303 29 1 2.8767 -5.4778 0.9066 30 1 5.8814 -1.6339 -1.4481 31 1 4.9510 0.5542 -0.7441 32 1 6.2933 0.7706 -1.8933 33 1 4.3816 2.2404 -2.4705 34 1 3.3236 0.8147 -2.5968 35 1 5.8166 1.3354 -4.2795 36 1 5.0652 -0.6665 -5.5347 37 1 3.7224 -0.8828 -4.3862 38 1 6.6922 -0.9270 -3.6823 39 1 5.6343 -2.3527 -3.8086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294085144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:29 Heat of formation + Delta-G solvation = -158.398884 kcal Electronic energy + Delta-G solvation = -30395.449401 eV Core-core repulsion = 25824.441210 eV Total energy + Delta-G solvation = -4571.008192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.93657 -47.48338 -47.30692 -38.66567 -36.24504 -35.90633 -34.76887 -32.76228 -31.79582 -31.45702 -30.79231 -26.85583 -25.59681 -23.52460 -22.69929 -21.92854 -20.42657 -19.19247 -18.20664 -18.11449 -17.89326 -17.43400 -17.26974 -16.19344 -15.56764 -15.32936 -14.76736 -14.61219 -14.39044 -14.21367 -13.88800 -13.79318 -13.68408 -13.58007 -13.50201 -13.39011 -13.15089 -12.91185 -12.75241 -12.56978 -12.37977 -12.16351 -11.81626 -11.62936 -11.55429 -11.31234 -11.04841 -10.75224 -10.43091 -10.29558 -10.25037 -10.03869 -9.85804 -9.59254 -9.39954 -9.10664 -8.81304 -8.07779 -6.66524 -4.30576 1.33048 2.91378 3.28470 3.36124 3.54478 3.56448 3.58268 3.91386 4.02642 4.10711 4.20390 4.38070 4.67446 4.71349 4.84344 4.90497 5.03051 5.11102 5.13039 5.14861 5.28956 5.40851 5.52088 5.58667 5.61564 5.70357 5.88388 5.96836 6.10139 6.14247 6.18208 6.24021 6.29765 6.50506 6.58196 6.86811 7.54813 8.03391 8.34297 8.84886 8.94553 10.33691 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.005514 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.825512 B = 5077.071651 C = 5506.830368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.165 4.165 3 C 0.229 3.771 4 N -0.828 5.828 5 C -0.273 4.273 6 H 0.097 0.903 7 C 0.103 3.897 8 N -0.807 5.807 9 Si 0.849 3.151 10 H -0.238 1.238 11 H -0.290 1.290 12 H -0.243 1.243 13 S 2.457 3.543 14 O -0.948 6.948 15 O -0.980 6.980 16 C -0.618 4.618 17 C -0.085 4.085 18 C -0.171 4.171 19 C -0.115 4.115 20 C 0.450 3.550 21 F -0.167 7.167 22 F -0.189 7.189 23 F -0.191 7.191 24 C -0.154 4.154 25 C -0.092 4.092 26 H 0.208 0.792 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.284 0.716 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 10.716 -6.067 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.168 4.168 3 C 0.103 3.897 4 N -0.651 5.651 5 C -0.422 4.422 6 H 0.115 0.885 7 C -0.116 4.116 8 N -0.440 5.440 9 Si 0.674 3.326 10 H -0.163 1.163 11 H -0.217 1.217 12 H -0.166 1.166 13 S 2.562 3.438 14 O -0.937 6.937 15 O -0.969 6.969 16 C -0.718 4.718 17 C -0.123 4.123 18 C -0.208 4.208 19 C -0.134 4.134 20 C 0.396 3.604 21 F -0.149 7.149 22 F -0.170 7.170 23 F -0.172 7.172 24 C -0.191 4.191 25 C -0.130 4.130 26 H 0.225 0.775 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.579 10.265 -6.976 12.916 hybrid contribution -0.207 -0.027 -0.546 0.584 sum 3.372 10.237 -7.521 13.143 Atomic orbital electron populations 1.24618 0.95725 1.00851 1.02883 1.23660 0.95010 0.99485 0.98600 1.18354 0.83697 0.85714 1.01898 1.52998 1.69033 1.16712 1.26344 1.18856 1.33559 0.90884 0.98913 0.88514 1.25799 0.96634 0.94904 0.94253 1.69827 1.35998 0.99693 1.38522 0.87283 0.81446 0.80561 0.83295 1.16280 1.21748 1.16609 1.13957 0.77669 0.75817 0.76338 1.93478 1.85925 1.29200 1.85110 1.93306 1.61652 1.70465 1.71481 1.30723 1.32548 1.05872 1.02675 1.21118 1.00451 0.91290 0.99469 1.22466 1.04814 1.02023 0.91540 1.22263 0.98742 0.96860 0.95564 1.20687 0.81657 0.77876 0.80138 1.93257 1.38183 1.88065 1.95353 1.93141 1.96556 1.34581 1.92759 1.93139 1.90322 1.95002 1.38776 1.22108 1.03761 0.92732 1.00542 1.21145 0.99884 1.00543 0.91460 0.77529 0.89007 0.89606 0.90623 0.85401 0.89875 0.91245 0.90322 0.85465 0.87510 0.90216 0.88123 0.90811 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.11 18.38 29.55 0.54 -3.57 16 2 C -0.17 -3.29 12.94 -37.12 -0.48 -3.77 16 3 C 0.23 4.19 4.57 -6.83 -0.03 4.15 16 4 N -0.83 -18.02 1.86 -62.78 -0.12 -18.13 16 5 C -0.27 -6.74 9.57 -15.06 -0.14 -6.88 16 6 H 0.10 2.37 8.06 -52.48 -0.42 1.94 16 7 C 0.10 2.77 4.39 -17.43 -0.08 2.69 16 8 N -0.81 -22.00 13.97 55.49 0.78 -21.22 16 9 Si 0.85 21.95 25.34 -169.99 -4.31 17.64 16 10 H -0.24 -6.50 6.04 56.52 0.34 -6.16 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.24 -6.11 5.51 56.52 0.31 -5.80 16 13 S 2.46 53.70 3.34 -107.50 -0.36 53.34 16 14 O -0.95 -24.65 11.90 -57.54 -0.68 -25.33 16 15 O -0.98 -21.75 11.60 -57.54 -0.67 -22.42 16 16 C -0.62 -10.34 3.29 -26.73 -0.09 -10.43 16 17 C -0.09 -1.18 4.88 -26.73 -0.13 -1.31 16 18 C -0.17 -2.43 3.84 -26.73 -0.10 -2.53 16 19 C -0.11 -1.56 2.17 -90.62 -0.20 -1.76 16 20 C 0.45 6.52 2.69 37.16 0.10 6.62 16 21 F -0.17 -2.86 16.28 2.25 0.04 -2.82 16 22 F -0.19 -2.61 16.80 2.25 0.04 -2.57 16 23 F -0.19 -2.67 16.80 2.25 0.04 -2.64 16 24 C -0.15 -2.30 4.65 -26.73 -0.12 -2.43 16 25 C -0.09 -1.36 5.45 -26.73 -0.15 -1.51 16 26 H 0.21 3.02 7.80 -54.10 -0.42 2.60 16 27 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 28 H 0.09 1.35 4.17 -51.93 -0.22 1.13 16 29 H 0.28 7.29 8.31 -40.82 -0.34 6.96 16 30 H 0.13 2.13 8.14 -51.93 -0.42 1.70 16 31 H 0.08 1.08 6.08 -51.93 -0.32 0.77 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.93 7.80 -51.93 -0.41 0.53 16 34 H 0.13 2.16 3.29 -51.92 -0.17 1.99 16 35 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.02 7.80 -51.93 -0.41 0.61 16 37 H 0.10 1.79 4.99 -51.93 -0.26 1.53 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -30.01 320.44 -5.73 -35.74 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.44 Total: 4.30 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -0.88 Total: -20.72 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.66 Total: -39.36 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -1.35 Total: -47.75 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.11 Total: -8.03 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.31 Total: 17.64 kcal Atomic # 16 Polarization: 53.70 SS G_CDS: -0.36 Total: 53.34 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.01 -5.73 -35.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294085144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.662 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds