Wall clock time and date at job start Tue Mar 31 2020 23:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46993 * 14.70213 * 3 2 1 5 5 C 1.36929 * 120.00218 * 274.67200 * 4 3 2 6 6 H 1.08003 * 120.00742 * 309.79883 * 5 4 3 7 7 C 1.38814 * 120.00185 * 129.79451 * 5 4 3 8 8 N 1.31620 * 120.00034 * 152.92206 * 7 5 4 9 9 Si 1.86799 * 119.99956 * 332.93204 * 7 5 4 10 10 H 1.48494 * 109.47175 * 95.84265 * 9 7 5 11 11 H 1.48503 * 109.47049 * 215.84508 * 9 7 5 12 12 H 1.48501 * 109.46750 * 335.84406 * 9 7 5 13 13 S 1.65604 * 119.99918 * 94.68126 * 4 3 2 14 14 O 1.42103 * 104.27688 * 199.85145 * 13 4 3 15 15 O 1.42101 * 104.27280 * 327.70349 * 13 4 3 16 16 C 1.81394 * 104.45227 * 83.77928 * 13 4 3 17 17 C 1.53005 * 109.47168 * 302.89138 * 16 13 4 18 18 C 1.53004 * 109.47021 * 299.99950 * 17 16 13 19 19 C 1.52995 * 109.47323 * 299.99939 * 18 17 16 20 20 C 1.53001 * 109.47016 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.47227 * 299.99725 * 20 19 18 22 22 F 1.39897 * 109.47028 * 60.00212 * 20 19 18 23 23 F 1.39899 * 109.47100 * 180.02562 * 20 19 18 24 24 C 1.53005 * 109.47022 * 60.00062 * 19 18 17 25 25 C 1.53001 * 109.47026 * 299.99751 * 24 19 18 26 26 H 4.40637 * 5.51405 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.46621 * 254.70005 * 3 2 1 28 28 H 1.08996 * 109.47104 * 134.70864 * 3 2 1 29 29 H 0.97008 * 119.99841 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47675 * 62.89081 * 16 13 4 31 31 H 1.09001 * 109.47153 * 59.99953 * 17 16 13 32 32 H 1.08995 * 109.47462 * 180.02562 * 17 16 13 33 33 H 1.08998 * 109.46890 * 179.97438 * 18 17 16 34 34 H 1.09009 * 109.46701 * 60.00089 * 18 17 16 35 35 H 1.09000 * 109.47246 * 300.00370 * 19 18 17 36 36 H 1.09001 * 109.47153 * 180.02562 * 24 19 18 37 37 H 1.09002 * 109.47372 * 60.00083 * 24 19 18 38 38 H 1.08995 * 109.46974 * 300.00267 * 25 24 19 39 39 H 1.09000 * 109.47071 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3351 -0.3505 5 6 3.2725 -2.2905 0.6206 6 1 3.8059 -2.0619 1.5315 7 6 2.7263 -3.5530 0.4346 8 7 3.2582 -4.5955 1.0369 9 14 1.2365 -3.7725 -0.6707 10 1 1.6828 -4.1733 -2.0292 11 1 0.3540 -4.8264 -0.1086 12 1 0.4884 -2.4924 -0.7531 13 16 3.5214 -1.6895 -1.9214 14 8 3.4884 -3.1090 -1.9787 15 8 2.6201 -0.9042 -2.6896 16 6 5.2200 -1.0838 -2.1173 17 6 5.2727 0.4065 -1.7751 18 6 4.3443 1.1787 -2.7146 19 6 4.7959 0.9715 -4.1617 20 6 3.8671 1.7432 -5.1012 21 9 2.5573 1.2756 -4.9499 22 9 3.9148 3.1060 -4.7884 23 9 4.2796 1.5533 -6.4244 24 6 4.7431 -0.5188 -4.5039 25 6 5.6716 -1.2910 -3.5645 26 1 -1.0498 -0.0003 -0.0003 27 1 3.0092 0.2720 0.9913 28 1 3.0090 0.7238 -0.7303 29 1 2.8767 -5.4778 0.9066 30 1 5.8814 -1.6339 -1.4481 31 1 4.9510 0.5542 -0.7441 32 1 6.2933 0.7706 -1.8933 33 1 4.3816 2.2404 -2.4705 34 1 3.3236 0.8147 -2.5968 35 1 5.8166 1.3354 -4.2795 36 1 5.0652 -0.6665 -5.5347 37 1 3.7224 -0.8828 -4.3862 38 1 6.6922 -0.9270 -3.6823 39 1 5.6343 -2.3527 -3.8086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294085144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:28 Heat of formation + Delta-G solvation = -177.522040 kcal Electronic energy + Delta-G solvation = -30396.278644 eV Core-core repulsion = 25824.441210 eV Total energy + Delta-G solvation = -4571.837434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.04781 -48.55515 -48.48440 -39.90543 -37.90813 -37.74385 -36.65891 -34.49565 -33.15173 -32.90519 -31.97523 -28.43783 -26.81448 -25.26665 -23.83215 -23.17005 -21.68382 -20.99056 -19.48454 -19.36716 -19.20953 -18.90377 -18.58386 -17.79907 -17.21993 -16.82171 -16.43671 -16.09465 -15.54336 -15.50285 -15.27877 -15.09067 -14.97068 -14.88617 -14.75156 -14.67579 -14.63454 -14.40059 -14.18679 -14.10040 -13.69465 -13.37921 -13.28583 -13.18435 -13.11444 -12.96034 -12.63466 -12.43460 -12.12210 -11.80018 -11.60474 -11.46167 -11.37551 -11.24240 -10.86321 -10.81067 -10.58311 -9.86078 -8.58726 -6.22793 -0.39059 1.23391 1.39940 1.47565 1.77874 1.83629 2.07881 2.30692 2.44322 2.83458 2.92812 2.98712 3.11178 3.16382 3.40912 3.57032 3.74331 3.76674 3.90765 3.99402 4.06811 4.15633 4.28903 4.39107 4.45417 4.54002 4.76524 4.79916 4.85099 4.95234 5.01446 5.05918 5.11546 5.13289 5.29702 5.43850 5.78871 6.15297 6.86906 7.00853 7.14626 8.47944 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.005514 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.825512 B = 5077.071651 C = 5506.830368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.205 4.205 3 C 0.216 3.784 4 N -0.849 5.849 5 C -0.298 4.298 6 H 0.092 0.908 7 C 0.076 3.924 8 N -0.862 5.862 9 Si 0.855 3.145 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.238 1.238 13 S 2.496 3.504 14 O -0.992 6.992 15 O -0.983 6.983 16 C -0.585 4.585 17 C -0.089 4.089 18 C -0.179 4.179 19 C -0.112 4.112 20 C 0.448 3.552 21 F -0.189 7.189 22 F -0.184 7.184 23 F -0.189 7.189 24 C -0.162 4.162 25 C -0.097 4.097 26 H 0.237 0.763 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.278 0.722 30 H 0.142 0.858 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.150 0.850 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.124 0.876 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 14.121 -7.806 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.207 4.207 3 C 0.091 3.909 4 N -0.674 5.674 5 C -0.438 4.438 6 H 0.110 0.890 7 C -0.136 4.136 8 N -0.499 5.499 9 Si 0.681 3.319 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.161 1.161 13 S 2.602 3.398 14 O -0.982 6.982 15 O -0.972 6.972 16 C -0.695 4.695 17 C -0.127 4.127 18 C -0.217 4.217 19 C -0.131 4.131 20 C 0.394 3.606 21 F -0.171 7.171 22 F -0.166 7.166 23 F -0.170 7.170 24 C -0.200 4.200 25 C -0.135 4.135 26 H 0.253 0.747 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.111 0.889 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.168 0.832 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.142 0.858 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.187 13.593 -8.548 17.208 hybrid contribution -0.933 -0.680 -0.433 1.233 sum 5.255 12.913 -8.980 16.583 Atomic orbital electron populations 1.25526 0.96926 0.99773 1.02076 1.24384 0.96308 1.00519 0.99530 1.18810 0.83123 0.84811 1.04133 1.52876 1.72148 1.17564 1.24830 1.18570 1.34233 0.90386 1.00588 0.89015 1.26029 0.97111 0.95865 0.94628 1.69857 1.38008 0.99689 1.42305 0.87175 0.82210 0.80657 0.81878 1.19351 1.21483 1.16072 1.10160 0.79817 0.74646 0.75208 1.93479 1.87377 1.31680 1.85666 1.93394 1.63077 1.70165 1.70606 1.30324 1.24957 1.08644 1.05597 1.21345 1.03369 0.88067 0.99955 1.22502 1.02967 1.03953 0.92247 1.22371 1.00567 0.95610 0.94551 1.20913 0.80960 0.78188 0.80543 1.93220 1.39997 1.88396 1.95489 1.93151 1.96465 1.34241 1.92721 1.93145 1.90137 1.95008 1.38730 1.22156 1.01787 0.93819 1.02231 1.21330 1.02448 1.00807 0.88960 0.74668 0.86571 0.86959 0.91216 0.84037 0.88938 0.86421 0.87255 0.88664 0.83218 0.87808 0.91678 0.85803 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.21 18.38 74.32 1.37 -6.85 16 2 C -0.21 -8.08 12.94 31.13 0.40 -7.68 16 3 C 0.22 7.60 4.57 84.58 0.39 7.99 16 4 N -0.85 -36.53 1.86 -352.53 -0.65 -37.19 16 5 C -0.30 -15.09 9.57 84.04 0.80 -14.29 16 6 H 0.09 4.65 8.06 -2.91 -0.02 4.63 16 7 C 0.08 4.26 4.39 84.86 0.37 4.63 16 8 N -0.86 -49.99 13.97 21.65 0.30 -49.69 16 9 Si 0.85 46.27 25.34 68.60 1.74 48.01 16 10 H -0.27 -15.48 6.04 99.48 0.60 -14.88 16 11 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 12 H -0.24 -12.35 5.51 99.48 0.55 -11.81 16 13 S 2.50 106.22 3.34 -56.49 -0.19 106.03 16 14 O -0.99 -52.44 11.90 -127.65 -1.52 -53.96 16 15 O -0.98 -42.63 11.60 -127.65 -1.48 -44.11 16 16 C -0.58 -16.89 3.29 30.60 0.10 -16.78 16 17 C -0.09 -1.90 4.88 30.60 0.15 -1.76 16 18 C -0.18 -4.13 3.84 30.59 0.12 -4.02 16 19 C -0.11 -2.41 2.17 -10.79 -0.02 -2.44 16 20 C 0.45 11.25 2.69 71.98 0.19 11.44 16 21 F -0.19 -6.11 16.28 44.97 0.73 -5.38 16 22 F -0.18 -4.34 16.80 44.97 0.76 -3.59 16 23 F -0.19 -4.59 16.80 44.97 0.76 -3.83 16 24 C -0.16 -4.12 4.65 30.60 0.14 -3.98 16 25 C -0.10 -2.34 5.45 30.60 0.17 -2.18 16 26 H 0.24 6.63 7.80 -4.43 -0.03 6.59 16 27 H 0.12 3.46 8.08 -2.39 -0.02 3.44 16 28 H 0.11 3.24 4.17 -2.39 -0.01 3.23 16 29 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 30 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16 31 H 0.09 1.90 6.08 -2.39 -0.01 1.88 16 32 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.11 1.91 7.80 -2.39 -0.02 1.90 16 34 H 0.10 2.89 3.29 -2.38 -0.01 2.89 16 35 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.10 2.15 7.80 -2.39 -0.02 2.13 16 37 H 0.06 2.16 4.99 -2.39 -0.01 2.14 16 38 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.17 320.44 5.45 -65.72 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.83 Total: 13.89 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 4.18 Total: -35.90 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -0.35 Total: -86.88 kcal Atomic # 8 Polarization: -95.07 SS G_CDS: -3.00 Total: -98.07 kcal Atomic # 9 Polarization: -15.05 SS G_CDS: 2.24 Total: -12.80 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.74 Total: 48.01 kcal Atomic # 16 Polarization: 106.22 SS G_CDS: -0.19 Total: 106.03 kcal Total: -71.17 5.45 -65.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294085144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.800 kcal (2) G-P(sol) polarization free energy of solvation -71.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds